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Apis mellifera
cluster # 584 cluster # 584       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_584#0 length = 876 sequences # 3  
consensus_584#1 length = 599 sequences # 1  

consensusID : consensus_584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 876
fasta sequence
                              [GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAGAACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATTGGTTACAGCGTGGGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTTCTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCCCTCTTTTTAATCGAGCTGGGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGCATGGAAATGATTTCCGTCATCTTTGTTTATGGCCACGAAAAATTCACGAAAGATATAGAAGAGATGACAGGATACAGACCAGGGGCGTATTGGCAATTCACCTGGCGATTTCTCGCTCCTATAATCATGGTCTGCATCCTTGTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCACGGGGCATAGCTGTACCGACCGCGTATCCCGGCTGGGTGTTGGCTATAGCGGTCGTCATCATTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTCAAGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACCAAAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCCGAGGAGGACGAAGNCGTGAACAGCGATGACGACAACAACAGCGCCCCGCCGATAACGAAGNTCGTCCCTAACAAACTTCAGGGTAAACCGTTCAAAATGGAAGTGATGGACTTTTAAAAGTTGTCAGNTTCGTCGACTTTTGTCGTATCGTTTCACC]

[+] EMBL BI502916             [GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAGAACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATTGGTTACAGCGTGGGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTTCTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCCCTCTTTTTAATCGAGCTGGGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGCATGGAAATGATTTCCGTCATCTTTGTTTATGGCCACGAAAAATTCACGAAAGATATAGAAGAGATGACAGGATACAGACCAGGGGCGTATTGGCAATTCACCTGGCGATTTCTCGCTCCTATAATCATGGTCTGCATCCTTGTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCACGGGGCATAGCTGTACCGACCGCGTAT                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI516548             [                                                                                                                                                                                                                                                                                                                                                                                                                AATCATGGTCTGCATCCTTGTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCACGGGGCATAGCTGTACCGACCGCGTATCCCGGCTGGGTGTTGGCTATAGCGGTCGTCATCATTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTCAAGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACCAAAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCCGAGGAGGACGAAGACGTGAACAGCGATGACGACAACAACAGCGCCCCGCCGATAACGAAGNTCGTCCCTAACAAACTTCAGGGTAAACCGTTCAAAATGGAAGTGATGGACTTTTAAAAGTTGTCAGNTTCGTCGACTTTTGTCGTATCGTTTCACC]
[+] EMBL BI516369             [                                                                                                                                                                                                                                                                                                                                                                                                                AATCATGGTCTGCATCCTCGTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCACGAGGCATAGCTGTACCGACCGCGTATCCCAGCTGGGTGTTGGCTATAGCGGTCGTCATCATTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTCAAGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACCAAAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCCGAGGAGGACGAAGNCGTGAACAGCGATGACGACAACAACAG                                                                                                                    ]


>consensus_584#0 GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAG AACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATTGGTTACAGCGTG GGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTT CTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCCCTCTTTTTAATCGAGCTG GGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGCATGGAAATGATTTCCGTCATCT TTGTTTATGGCCACGAAAAATTCACGAAAGATATAGAAGAGATGACAGGATACAGACCAG GGGCGTATTGGCAATTCACCTGGCGATTTCTCGCTCCTATAATCATGGTCTGCATCCTTG TCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCAC GGGGCATAGCTGTACCGACCGCGTATCCCGGCTGGGTGTTGGCTATAGCGGTCGTCATCA TTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTCA AGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACCA AAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCCG AGGAGGACGAAGNCGTGAACAGCGATGACGACAACAACAGCGCCCCGCCGATAACGAAGN TCGTCCCTAACAAACTTCAGGGTAAACCGTTCAAAATGGAAGTGATGGACTTTTAAAAGT TGTCAGNTTCGTCGACTTTTGTCGTATCGTTTCACC



consensusID : consensus_584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence
                              [TATCGAGAAAAAAAACTCGTTCCGATCTGCGAATTCTTCCCCCTCCCCCCTCCCCAAATAACGAAGGAGAAAAATAAAGAAGGAGAGAAAGAGAGAGAGAGAAAAAGGGAAGAATCGAACTCGTCTTTTCGCCTTTGGAAACAAAGAGGTCCGAAGTGAAGCATGGTAGTCAAGAACGAGAATACGAGAAATGGGCATGAGCTGGCTCCGTTGAACGAGGAACGTCAGGCAGGGCAGAACGTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAGAACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATCGGTTACAGCGTGGGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTTCTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCTCTCTTTTTAATCGAGCTGGGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGTATGGAACACGATACATCCATGGTTAGGCGGTATAGGGATAGCATCGTGCATCGTCACCTTCTTCGTAGCACTTTATTACAA]

[+] EMBL BI508914             [TATCGAGAAAAAAAACTCGTTCCGATCTGCGAATTCTTCCCCCTCCCCCCTCCCCAAATAACGAAGGAGAAAAATAAAGAAGGAGAGAAAGAGAGAGAGAGAAAAAGGGAAGAATCGAACTCGTCTTTTCGCCTTTGGAAACAAAGAGGTCCGAAGTGAAGCATGGTAGTCAAGAACGAGAATACGAGAAATGGGCATGAGCTGGCTCCGTTGAACGAGGAACGTCAGGCAGGGCAGAACGTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAGAACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATCGGTTACAGCGTGGGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTTCTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCTCTCTTTTTAATCGAGCTGGGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGTATGGAACACGATACATCCATGGTTAGGCGGTATAGGGATAGCATCGTGCATCGTCACCTTCTTCGTAGCACTTTATTACAA]


>consensus_584#1 TATCGAGAAAAAAAACTCGTTCCGATCTGCGAATTCTTCCCCCTCCCCCCTCCCCAAATA ACGAAGGAGAAAAATAAAGAAGGAGAGAAAGAGAGAGAGAGAAAAAGGGAAGAATCGAAC TCGTCTTTTCGCCTTTGGAAACAAAGAGGTCCGAAGTGAAGCATGGTAGTCAAGAACGAG AATACGAGAAATGGGCATGAGCTGGCTCCGTTGAACGAGGAACGTCAGGCAGGGCAGAAC GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAG AACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATCGGTTACAGCGTG GGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTT CTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCTCTCTTTTTAATCGAGCTG GGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGTATGGAACACGATACATCCATGG TTAGGCGGTATAGGGATAGCATCGTGCATCGTCACCTTCTTCGTAGCACTTTATTACAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_584#0      ------------------------------------------------------------
consensus_584#1      TATCGAGAAAAAAAACTCGTTCCGATCTGCGAATTCTTCCCCCTCCCCCCTCCCCAAATA 60
                                                                                 

consensus_584#0      ------------------------------------------------------------
consensus_584#1      ACGAAGGAGAAAAATAAAGAAGGAGAGAAAGAGAGAGAGAGAAAAAGGGAAGAATCGAAC 120
                                                                                 

consensus_584#0      ------------------------------------------------------------
consensus_584#1      TCGTCTTTTCGCCTTTGGAAACAAAGAGGTCCGAAGTGAAGCATGGTAGTCAAGAACGAG 180
                                                                                 

consensus_584#0      ------------------------------------------------------------
consensus_584#1      AATACGAGAAATGGGCATGAGCTGGCTCCGTTGAACGAGGAACGTCAGGCAGGGCAGAAC 240
                                                                                 

consensus_584#0      GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAG 60
consensus_584#1      GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAG 300
                     ************************************************************

consensus_584#0      AACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATTGGTTACAGCGTG 120
consensus_584#1      AACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATCGGTTACAGCGTG 360
                     *********************************************** ************

consensus_584#0      GGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTT 180
consensus_584#1      GGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTT 420
                     ************************************************************

consensus_584#0      CTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCCCTCTTTTTAATCGAGCTG 240
consensus_584#1      CTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCTCTCTTTTTAATCGAGCTG 480
                     ***************************************** ******************

consensus_584#0      GGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGCATGGAA-ATGATTTCCGTCATC 299
consensus_584#1      GGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGTATGGAACACGATA-----CATC 535
                     ************************************* ****** * ***      ****

consensus_584#0      TTTGTTTATGGCCACGAAAAATTCACGAAAGATATAGAAGAGATGACAGGATACAGACCA 359
consensus_584#1      CATGGTTA-GGCGGTATAGGGATAGCATCGTGCATCG------TCACCTTCTTCGTAGCA 588
                       ** *** ***     *    *  *       ** *      * **    * *  * **

consensus_584#0      GGGGCGTATTGGCAATTCACCTGGCGATTTCTCGCTCCTATAATCATGGTCTGCATCCTT 419
consensus_584#1      ----CTTTATTACAA--------------------------------------------- 599
                         * *  *  ***                                             

consensus_584#0      GTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCA 479
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      CGGGGCATAGCTGTACCGACCGCGTATCCCGGCTGGGTGTTGGCTATAGCGGTCGTCATC 539
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      ATTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTC 599
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      AAGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACC 659
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      AAAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCC 719
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      GAGGAGGACGAAGNCGTGAACAGCGATGACGACAACAACAGCGCCCCGCCGATAACGAAG 779
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      NTCGTCCCTAACAAACTTCAGGGTAAACCGTTCAAAATGGAAGTGATGGACTTTTAAAAG 839
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      TTGTCAGNTTCGTCGACTTTTGTCGTATCGTTTCACC 876
consensus_584#1      -------------------------------------
                                                          




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)