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Apis mellifera
cluster # 588 cluster # 588       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_588#0 length = 706 sequences # 3  
consensus_588#1 length = 283 sequences # 1  

consensusID : consensus_588#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 706
fasta sequence
                              [GTTTTTAAATCTCGGGATAACTTCATGTAAACAGTTACTATATATCAATACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGTGGAAAAAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCAAAAAAGAAATGTATATCATTTTCTTCTTGAATTCCTTGTGGTAT]

[+] EMBL BI514869             [GTTTTTAAATCTCGGGATAACTTCATGTAAACAGTTACTATATATCAATACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGTGGAAAAAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCNNGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCANTTATAAATTTTAAGAAATATCTTTTGTCAAT                                                                                                                                                                             ]
[+] EMBL BI510183             [                                                                                                                     AGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCNACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCAAAAAAAAAA                                   ]
[+] EMBL BI509586             [                                                                                                                                                                                                           CATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTGTTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCATATACGAATTGTATATCATTTTCTTCTTGAATTCCTTGTGGTAT]


>consensus_588#0 GTTTTTAAATCTCGGGATAACTTCATGTAAACAGTTACTATATATCAATACCAATCTATT AAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGTGGAAAAAGCCCAAGTTGCAGT TCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCAT TTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTT TCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGC TTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAA TGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCA TATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCA TTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAG TATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTA TAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTT CAAAAAAGAAATGTATATCATTTTCTTCTTGAATTCCTTGTGGTAT



consensusID : consensus_588#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence
                              [TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAATATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAACTGCTACTATGAACACGTAAAATTTGAAATATTCTTATATAATTTATATCCTTNNNNAAGATTCTAAGAAAAAATTTTTTAATATTTTAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA]

[+] EMBL BI504629             [TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAATATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAACTGCTACTATGAACACGTAAAATTTGAAATATTCTTATATAATTTATATCCTTNNNNAAGATTCTAAGAAAAAATTTTTTAATATTTTAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA]


>consensus_588#1 TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAA TATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAAC TGCTACTATGAACACGTAAAATTTGAAATATTCTTATATAATTTATATCCTTNNNNAAGA TTCTAAGAAAAAATTTTTTAATATTTTAGTGCGTTGCATTTCAAGATATAAATGCTCAAG CACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_588#0      -----GTTTTTAAAT--CTCGGGATAACTTC-----ATGTAAACAGTTACTATATATCAA 48
consensus_588#1      TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAA 60
                           ** ******   *    ***** *      ** * **   **   ** * * **

consensus_588#0      TACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGT----GGAAA 104
consensus_588#1      TATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAAC 120
                     ** *     **** **   * *  **  *     ** **    * *    *    * ** 

consensus_588#0      AAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAA 164
consensus_588#1      TGCTACTATGAACACGTAAAATTTGAAATATTCTTAT--ATAATTTATATCCTTNNNNAA 178
                          * *    **  *   * * ** *** * ** *    **  **  ** *     **

consensus_588#0      TACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTC 224
consensus_588#1      GATTCTAAGAAAAAATTTTTTAATATT-TTAGTGCGTTGCATTTCAAGATATAAATGCTC 237
                      *   *   *    **** * ** **  * ******************************

consensus_588#0      AAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCG 284
consensus_588#1      AAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA-------------- 283
                     **********************************************              

consensus_588#0      AAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGC 344
consensus_588#1      ------------------------------------------------------------
                                                                                 

consensus_588#0      AACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAAT 404
consensus_588#1      ------------------------------------------------------------
                                                                                 

consensus_588#0      CGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCT 464
consensus_588#1      ------------------------------------------------------------
                                                                                 

consensus_588#0      AAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCT 524
consensus_588#1      ------------------------------------------------------------
                                                                                 

consensus_588#0      TTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTAT 584
consensus_588#1      ------------------------------------------------------------
                                                                                 

consensus_588#0      AAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTAT 644
consensus_588#1      ------------------------------------------------------------
                                                                                 

consensus_588#0      TCTTTTTTATATACTTCAAAAAAGAAATGTATATCATTTTCTTCTTGAATTCCTTGTGGT 704
consensus_588#1      ------------------------------------------------------------
                                                                                 

consensus_588#0      AT 706
consensus_588#1      --
                       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)