These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 706 fasta sequence [GTTTTTAAATCTCGGGATAACTTCATGTAAACAGTTACTATATATCAATACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGTGGAAAAAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCAAAAAAGAAATGTATATCATTTTCTTCTTGAATTCCTTGTGGTAT] [+] EMBL BI514869 [GTTTTTAAATCTCGGGATAACTTCATGTAAACAGTTACTATATATCAATACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGTGGAAAAAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCNNGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCANTTATAAATTTTAAGAAATATCTTTTGTCAAT ] [+] EMBL BI510183 [ AGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCNACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCAAAAAAAAAA ] [+] EMBL BI509586 [ CATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTGTTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCATATACGAATTGTATATCATTTTCTTCTTGAATTCCTTGTGGTAT] consensusID : consensus_588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAATATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAACTGCTACTATGAACACGTAAAATTTGAAATATTCTTATATAATTTATATCCTTNNNNAAGATTCTAAGAAAAAATTTTTTAATATTTTAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA] [+] EMBL BI504629 [TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAATATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAACTGCTACTATGAACACGTAAAATTTGAAATATTCTTATATAATTTATATCCTTNNNNAAGATTCTAAGAAAAAATTTTTTAATATTTTAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_588#0 -----GTTTTTAAAT--CTCGGGATAACTTC-----ATGTAAACAGTTACTATATATCAA 48 consensus_588#1 TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAA 60 ** ****** * ***** * ** * ** ** ** * * ** consensus_588#0 TACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGT----GGAAA 104 consensus_588#1 TATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAAC 120 ** * **** ** * * ** * ** ** * * * * ** consensus_588#0 AAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAA 164 consensus_588#1 TGCTACTATGAACACGTAAAATTTGAAATATTCTTAT--ATAATTTATATCCTTNNNNAA 178 * * ** * * * ** *** * ** * ** ** ** * ** consensus_588#0 TACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTC 224 consensus_588#1 GATTCTAAGAAAAAATTTTTTAATATT-TTAGTGCGTTGCATTTCAAGATATAAATGCTC 237 * * * **** * ** ** * ****************************** consensus_588#0 AAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCG 284 consensus_588#1 AAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA-------------- 283 ********************************************** consensus_588#0 AAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGC 344 consensus_588#1 ------------------------------------------------------------ consensus_588#0 AACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAAT 404 consensus_588#1 ------------------------------------------------------------ consensus_588#0 CGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCT 464 consensus_588#1 ------------------------------------------------------------ consensus_588#0 AAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCT 524 consensus_588#1 ------------------------------------------------------------ consensus_588#0 TTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTAT 584 consensus_588#1 ------------------------------------------------------------ consensus_588#0 AAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTAT 644 consensus_588#1 ------------------------------------------------------------ consensus_588#0 TCTTTTTTATATACTTCAAAAAAGAAATGTATATCATTTTCTTCTTGAATTCCTTGTGGT 704 consensus_588#1 ------------------------------------------------------------ consensus_588#0 AT 706 consensus_588#1 -- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |