These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 786 fasta sequence [GAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGGCGAGCGACGGCTTCGAAGGGACTGGAAAAATCGTTTGTCGCGATTAGTAGCGATTCGAGGTTGCCNTGGTTCATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG] [+] EMBL BI509215 [GAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGA ] [+] EMBL BI502760 [ GCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGATGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGGCGAGCGACGGCTTCGAAGGGACTGGAAAAATCGTTTGTCGCGATTAGTAGCGATTCGAGGTTGCCNTGGTTCATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG] consensusID : consensus_593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [TTTTCGTTCGCGCGAATTTCCACGCGTCGATCGAACTTCGCTTGAAGAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG] [+] EMBL BI507392 [TTTTCGTTCGCGCGAATTTCCACGCGTCGATCGAACTTCGCTTGAAGAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG] consensusID : consensus_593#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [TATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGCCGAGCGACGGTTTCGAAGGGACTGGAAAAATCGTTTGTCGCGA] [+] EMBL BI509562 [TATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGCCGAGCGACGGTTTCGAAGGGACTGGAAAAATCGTTTGTCGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_593#0 GAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATAC 60 consensus_593#2 ------------------------------------------------------------ consensus_593#1 ------------------------------------------------------------ consensus_593#0 TGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAAT 120 consensus_593#2 ------------------------------------------------------------ consensus_593#1 ------------------------------------------------------------ consensus_593#0 GAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAG 180 consensus_593#2 ------------------------------------------------------------ consensus_593#1 ------------------------------------------------------------ consensus_593#0 GGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGC 240 consensus_593#2 ------------------------------------------------------------ consensus_593#1 ------------------------------------------------------------ consensus_593#0 GTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCG 300 consensus_593#2 ---------------------------------------TATAGCGCGAGACAGCGCCCG 21 consensus_593#1 ----------------------------------TTTTCGTTCGCGCGAATTTCCACGCG 26 * ****** * * ** consensus_593#0 -CGATTCA--CGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATAT 357 consensus_593#2 -CGATTCA--CGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATAT 78 consensus_593#1 TCGATCGAACTTCGCTTGAAGAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGA 86 **** * ** * * ** * * ** * * **** consensus_593#0 ACCCAACGCAACGTATATGTGTGCATATATATATATATATAT--GACGCGGTGCA---TC 412 consensus_593#2 ACCCAACGCAACGTATATGTGTGCATATATATATATATATATATGACGCGGTGCA---TC 135 consensus_593#1 ATAAGAAAAGATTCACATAC-TGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTC 145 * * * * ** ** **** * * * ** * ** * * ** consensus_593#0 GAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGAT 472 consensus_593#2 GAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGAT 195 consensus_593#1 TGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAA 205 * * ** ** ** **** * * * * ** * consensus_593#0 TCGCTCGACGAT-------------CCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAA 519 consensus_593#2 TCGCTCGACGATTCGCTCGACG-ATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAA 254 consensus_593#1 ACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTC 265 ** *** * * ** ** * * * * * consensus_593#0 GAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGAC 579 consensus_593#2 GAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGAC 314 consensus_593#1 GACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAAC-GCGGCGCGGCTAGGA 324 ** * ** * *** * *** ** * * *** *** ***** * * consensus_593#0 GAAGAGGGGGAATCGAGGGTCAGCGAGCGA-GCGAGCGAGCGAGCGAGAGAGAGAGAGAG 638 consensus_593#2 GAAGAGGGGGAATCGAGGGTCAGCGAGCGA-GCGAGCGAGCGAGAGAGAGAGAGAGAGAG 373 consensus_593#1 TTATAGCGCGAGAC-AGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGA 383 * ** * ** * ** * * **** * *** ** * * * consensus_593#0 AGAGA------------------AGTCGAGCGGTCGGCGAGCGACGGCTTCGAAGGGACT 680 consensus_593#2 AGAGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGCCGAGCGACGGTTTCGAAGGGACT 433 consensus_593#1 TAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATACTAGG 443 * ** ** * * * * * * consensus_593#0 GGAAAAATCGTTTGTCGCGATTAGTAGCGATTCGAGGTTGCCNTGGTTCATATATACTAG 740 consensus_593#2 GGAAAAATCGTTTGTCGCGA---------------------------------------- 453 consensus_593#1 TGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG--------------- 488 ***** * * * ** * consensus_593#0 GTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG 786 consensus_593#2 ---------------------------------------------- consensus_593#1 ---------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |