These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 723 fasta sequence [GATGTTATTTTTGTAATCGAACAACAGATACCGAATGATAAAGTGTACAAGGAAATGATTACACCTTTAATGTCTGAACTTAGGGAGGAATTGAAACAACAAGGAGTAACAGACGTGCACATTGGATTAATCGGGTACAGCGAGATGATGAAATGGCCACAACACCTTTACATTAAATGGCGGATACCAACATAGATGGTGAAGTCAAAAATATGAAGTTTGAGGAAGGAAAACCAATAATTTCTTACCAGGAAGCGAAAGAAGGCAATACGGAAAAAAAAATTGATTATCTACACCANAGAATGGATGTCGAATTAGGTACTTTCAAATTGACCGATGCTTACGAGGCAGCNATTCGATATCCATTCAGACCTGGTGCAGCGAGGGCTGTGGNNGGAGTGATCGCGAACCCCTGCGAGAAGAGTCCATTCCCCATTTCGTTGCAGCAACTTAGACTTTTACTCGGTNTTAAAATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTCTCGGGCAAGCCTCAGAAAAATATCGTCGCTTACGACCAAGACAACGTGTACACGTTCGCTGACAGCAAGAAGAAACCACTCACCGGAAGCACCGACATGAAGAGCAATCTCGTACCGGCGATCAAGGACGTCTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGG] [+] EMBL BG101556 [GATGTTATTTTTGTAATCGAACAACAGATACCGAATGATAAAGTGTACAAGGAAATGATTACACCTTTAATGTCTGAACTTAGGGAGGAATTGAAACAACAAGGAGTAACAGACGTGCACATTGGATTAATCGGGTACAGCGAGATGATGAAATGGCCACAACACCTTTACATTAAATGGCGGATACCAACATAGATGGTGAAGTCAAAAATATGAAGTTTGAGGAAGGAAAACCAATAATTTCTTACCAGGAAGCGAAAGAAGGCAATACGGAAAAAAAAATTGATTATCTACACCANAAAATGGATGT ] [+] EMBL BI503517 [ CAGCGAGATGATGAAATGGCCACAACA CTTTACATTAAATGGC GATACCAACATAGATGGTGAAGTCAAAAATATGAAGTTTGAGGAAGGAAAACCAATAATTTCTTACCAGGAAGCGAAAGAAGGCAATACGGAAAAAAAAATTGATTATCTACACCAGAGAATGGATGTCGAATTAGGTACTTTCAAATTGACCGATGCTTACGAGGCAGCTATTCGATATCCATTCAGACCTGGTGCAGCGAGGGCTGTGGTCGGAGTGATCGCGAACCCCTGCGAGAAGAGTCCATTCCCCATTTCGTTGCAGCAACTTAGACTTTTACTCGGTCTTAAAATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTCTCGGGCAAGCCTCAGAAAAATATCGTCGCTTACGACCAAGACAACGTGTACACGTTCGCTGACAGCAAGAAGAAACCACTCACCGGAAGCACCGACATGAAGAGCAATCTCGTACCGGCGATCAAGGACGTCTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGG] [+] EMBL BI504447 [ GAGGCAGCNATTCGATATCCATTCAGACCTGGTGCAGCGAGGGCTGTGGNNGGAGTGATCGCGAACCCCTGCGAGAAGAGTCCATTCCCCATTTCGTTGCAGCAACTTAGACTTTTACTCGGTNTTAAAATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTCTCGGGCAAGCCTCAGAAAAATATCGTCGCTTACGACCAAGACAACGTGTACACGTTCGCTGACAGCAAGAAGAAACCAC ] consensusID : consensus_613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGGACGCCAAGTCGAATCAGAAGAAGCAATTCGTCCAAGTGGCAGCGAAGAGGATCGCAGATAGCCTCGTCAACGTAGAATTTGAGAAAGATTGCTCGTGCTTGTACGAATACGGTATGATAGGCCGCTCTAAGTGTAAGATCGTAGGTCGAAAGGAAGTTCCGAGATCCGCGAAAGGAGGAACGAAGGGTTAAAGCGAGACCGTCGCGCATCCCAAAATAATTACTAATTAATTTAGGTGTATTGTGTTTGTTACTTTGTTATACTACGGCAGACGTATTTTCGATATTTGTAAGCAAATTAAGATCATCATACCTCCCAGCGACAGGGAGGGCCACAATTAAGAGTAATCACCGAGTAAAAACCGAGGACTGAAAAAAAAAAACTTCATTTCCTTCCCGTTGAAATTCGCTTCGATGATTTTTTTTTTTTCCTGTAAATAATAATCTTTTATATTTTTTCGCAACAAC] [+] EMBL BI509512 [CTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGGACGCCAAGTCGAATCAGAAGAAGCAATTCGTCCAAGTGGCAGCGAAGAGGATCGCAGATAGCCTCGTCAACGTAGAATTTGAGAAAGATTGCTCGTGCTTGTACGAATACGGTATGATAGGCCGCTCTAAGTGTAAGATCGTAGGTCGAAAGGAAGTTCCGAGATCCGCGAAAGGAGGAACGAAGGGTTAAAGCGAGACCGTCGCGCATCCCAAAATAATTACTAATTAATTTAGGTGTATTGTGTTTGTTACTTTGTTATACTACGGCAGACGTATTTTCGATATTTGTAAGCAAATTAAGATCATCATACCTCCCAGCGACAGGGAGGGCCACAATTAAGAGTAATCACCGAGTAAAAACCGAGGACTGAAAAAAAAAAACTTCATTTCCTTCCCGTTGAAATTCGCTTCGATGATTTTTTTTTTTTCCTGTAAATAATAATCTTTTATATTTTTTCGCAACAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_613#0 GATGTTATTTTTGTAATCGAACAACAGATACCGAATGATAAAGTGTACAAGGAAATGATT 60 consensus_613#1 ------------------------------------------------------------ consensus_613#0 ACACCTTTAATGTCTGAACTTAGGGAGGAATTGAAACAACAAGGAGTAACAGACGTGCAC 120 consensus_613#1 ------------------------------------------------------------ consensus_613#0 ATTGGATTAATCGGGTACAGCGAGATGATGAAATGGCCACAACACCTTTACATTAAATG- 179 consensus_613#1 -----------------------------------------------CTGCGCTGACTTC 13 * * * * * consensus_613#0 GCGGATACCAACATAGATGGTGAAGTCAAAAATATGAAGTTTGAGGAAGGAAAACCAATA 239 consensus_613#1 GCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGGACGCCAAGTCGA-- 71 **** * * * ** * *** * ** ** *** * ** * * consensus_613#0 ATTTCTTACCAGGAAGCGAAAGAAGGCAATACGGAAAAAAAAATTGATTATCTACACCAN 299 consensus_613#1 -------ATCAGAAGAAGCAATTCGTCCAAGTGGCAGCGAAGAG-GATCGCAGATAGCCT 123 * *** * * ** * * * ** * ** * *** * * * consensus_613#0 AGAATGGATGTCGAATTAGGTACTTTCAAATTGACCGATGCTTACGAGGCAGCNATTCGA 359 consensus_613#1 CG--TCAACGTAGAATTTGAGAA----AGATTGCTCG-TGCTTGTACGAATACGGTATGA 176 * * * ** ***** * * * **** ** ***** * * * ** consensus_613#0 TATCCATTCAGACCTGGTGCAGCGAGGGCTGTGGNNGGAGT----GATC-GCGAACCCCT 414 consensus_613#1 TAGGCCGCTCTAAGTGTAAGATCGTAGGTCGAAAGGAAGTTCCGAGATCCGCGAAAGGAG 236 ** * * ** * ** ** * * **** ***** consensus_613#0 GCGAGAAGAGTCCATTCCCCATTTCGTTGCAGCAACTTAGACTTTTACTCGGTN-TTAAA 473 consensus_613#1 GAACGAAGGGTTAAAGC--GAGACCGTCGCGCATCCCAAAATAATTACTAATTAATTTAG 294 * **** ** * * * *** ** * * * ***** * ** * consensus_613#0 ATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTC 533 consensus_613#1 GTGTATTGTG-TTTGTTACTTTGTTAT-ACTACG----GCAGACGTA-----TTTTCGAT 343 * *** *** **** *** *** ** *** * * ** * ** *** consensus_613#0 TCGGGCAAGCCTCAGAAAAATATCGTCGCTTACGACCAAGACAACGTGTACACGTTCGCT 593 consensus_613#1 ATTTGTAAGCAAATTAAGATCATCATACCTCCCAGCGACAGGGAGGGCCACA-----ATT 398 * **** ** * *** * ** * * * * * *** * consensus_613#0 GACAGCAAGAAGAAACCACTCACCGGAAGCACCGACATGAAGAGCAATCTCGTACCGGCG 653 consensus_613#1 AAGAGTAATCACCGAGTAAAAACCG--AGGACTGAAAAAAAAAAACTTCATTTCCTTCCC 456 * ** ** * * * **** ** ** ** * ** * ** * * * consensus_613#0 ATCAAGGACGTCTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAAC 713 consensus_613#1 GTTGAAATTCGCTTCGATGATTT-----TTTTTTTTTCCTGTA-AATAATAATCTTTTAT 510 * * ** ** *** ** **** * * * ** * * ** * consensus_613#0 AACTTCTTGG------ 723 consensus_613#1 ATTTTTTCGCAACAAC 526 * ** * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |