These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 988 fasta sequence [GGACCTGCAGTATCTATACCAGTTACTACAATTAAACCTGCTCAAGCATTAGAAGCTGCAAAAGTACAATTACCTCCTGATGATTATACACGTGAAATAACTGGTACCAGAACAGAACAACGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAAAAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCGCAAATTACATCAAGAAAACTTTACAAAGAAATATGGTTTGAAATTAGGATTTATGAGTCCATTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATAGACGGC-GCTGAAATAGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTGCAACACCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATTGCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTCGAAGATATGGATGGTGGTACATTTACAATAAGTAACGGCGGTGTTTTTGGTTCTCTGATGGGAACGCCTATTATTAATCCACCACAAAGCTCAATTCTTGGAATGCACGGAGTATTTGATAGACCCATTGCAATAAAGGGCGAGATCGTAATTCGTCCAATGATGTATGTGGCTTTAACATATGATCATCGATTAATTGATGGACGTGAGGCTGTGATGTTTTTAAGAAAGATCAAGGCTGCTGTAGAAGATCCCAGAATTATATTAGCTGGACTTTGAGCATCGTAAATATTTTTATTAAATCGCTTCAAACACGCCTCTCATCATATCTAAAACATTTTGTACACGTTGTATTATATTGTGTTCATCAAAACAACATATTCTTAAATACTTATTAATCATTGTGATAAATGAAAGTAAAAAGAGAAAAATATTATACGCGAAATAACACGAAAAAAAA] [+] EMBL BI511683 [GGACCTGCAGTATCTATACCAGTTACTACAATTAAACCTGCTCAAGCATTAGAAGCTGCAAAAGTACAATTACCTCCTGATGATTATACACGTGAAATAACTGGTACCAGAACAGAACAACGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAAAAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCGCAAATTACATCAAGAAAACTTTACAAAGAAATATGGTTTGAAATTAGGATTTATGAGTCCATTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATAGACGGC GCTGAAATAGTTTATAGAGATTATGTTGATATCAGTNNNGCAGTTGCAACACCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATTGCTTTGGCAGCTTTAAGC ] [+] EMBL BG101534 [ AACAACGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAAAAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCGCAAATTACATCAAGAAAACTTTACAAAGAAATATGGTTTGAAATTAGGATTTATGAGTCCATTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATAGACGGCGGCTGAAATAGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTGCAACACCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATTGCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTC ] [+] EMBL BI503525 [ AGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTGCAACACCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATTGCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTCGAAGATATGGATGGTGGTACATTTACAATAAGTAACGGCGGTGTTTTTGGTTCTCTGATGGGAACGCCTATTATTAATCCACCACAAAGCTCAATTCTTGGAATGCACGGAGTATTTGATAGACCCATTGCAATAAAGGGCGAGATCGTAATTCGTCCAATGATGTATGTGGCTTTAACATATGATCATCGATTAATTGATGGACGTGAGGCTGTGATGTTTTTAAGAAAGATCAAGGCTGCTGTAGAAGATCCCAGAATTATATTAGCTGGACTTTGAGCATCGTAAATATTTTTATTAAATCGCTTCAAACACGCCTCTCATCATATCTAAAACATTTTGTACACGTTGTATTATATTGTGTTCATCAAAACAACATATTCTTAAATACTTATTAATCATTGTGATAAATGAAAGTAAAAAGAGAAAAATATTATACGCGAAATAACACGAAAAAAAA] consensusID : consensus_614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [GGTCGNAATGAACAGAATGCGAATGCGTNTTGCAGAACGATTAATGAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGNATTATGGAATTCCGCAAGATTACATCAAGANAACTTTACAAAGAAATATGGNTATGAACTTAGGATTTATGAGTCCATANATTGCAGCNTGNGCCTATGCTTTAAAAGATCAACCCGCTTGCNATGCTGTAATGGGACTGGCGCTNACTTAGTTCATACCGATTATGTNGATATCNGTGTNNCAGNTNGCANCACCAAAAGGACTTGATGCCNCNCATCTTNGTAGTGTTAAAATGTNGAATCATCACATNTGGANATTGNNCTNGNA] [+] EMBL BG101618 [GGTCGNAATGAACAGAATGCGAATGCGTNTTGCAGAACGATTAATGAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGNATTATGGAATTCCGCAAGATTACATCAAGANAACTTTACAAAGAAATATGGNTATGAACTTAGGATTTATGAGTCCATANATTGCAGCNTGNGCCTATGCTTTAAAAGATCAACCCGCTTGCNATGCTGTAATGGGACTGGCGCTNACTTAGTTCATACCGATTATGTNGATATCNGTGTNNCAGNTNGCANCACCAAAAGGACTTGATGCCNCNCATCTTNGTAGTGTTAAAATGTNGAATCATCACATNTGGANATTGNNCTNGNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_614#0 GGACCTGCAGTATCTATACCAGTTACTACAATTAAACCTGCTCAAGCATTAGAAGCTGCA 60 consensus_614#1 ------------------------------------------------------------ consensus_614#0 AAAGTACAATTACCTCCTGATGATTATACACGTGAAATAACTGGTACCAGAACAGAACAA 120 consensus_614#1 ------------------------------------------------------------ consensus_614#0 CGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAA-AAGAAGCTCAAAA 179 consensus_614#1 --GGTCGNAATGAACAGAATGCGAATGCGTNTTGCAGAACGATTAATGAGAAGCTCAAAA 58 *** ********************** *************** ************ consensus_614#0 TACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCG 239 consensus_614#1 TACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGNATTATGGAATTCCG 118 ********************************************* ************** consensus_614#0 CAA-ATTACATCAAGAAAACTTTACAAAGAAATATGGTT-TGAAATTAGGATTTATGAGT 297 consensus_614#1 CAAGATTACATCAAGANAACTTTACAAAGAAATATGGNTATGAACTTAGGATTTATGAGT 178 *** ************ ******************** * **** *************** consensus_614#0 CCATTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATA 357 consensus_614#1 CCATANATTGCAGCNTGNGCCTATGCTTTAAAAGATCAACCCGCTTGCNATGCTGTAATG 238 **** ******** * *********************** * ********** consensus_614#0 GA--CGGCGCTGAAATAGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTG-CAACA 414 consensus_614#1 GGACTGGCGCTNACTTAGTTCATACCGATTATGTNGATATCNGTGTNNCAGNTNGCANCA 298 * ****** * ***** *** ******** ****** **** *** * ** ** consensus_614#0 CCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATT 474 consensus_614#1 CCAAAAGGACTTGATGCCNCNCATCTTNGTAGTGTT-AAAATGTNGAATCATCACATNTG 357 ************* ** * * **** ******* ***** * * ** * * consensus_614#0 GAAATTGCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTCGAAGAT 534 consensus_614#1 GANATTGNNCTNGNA--------------------------------------------- 372 ** **** * * * consensus_614#0 ATGGATGGTGGTACATTTACAATAAGTAACGGCGGTGTTTTTGGTTCTCTGATGGGAACG 594 consensus_614#1 ------------------------------------------------------------ consensus_614#0 CCTATTATTAATCCACCACAAAGCTCAATTCTTGGAATGCACGGAGTATTTGATAGACCC 654 consensus_614#1 ------------------------------------------------------------ consensus_614#0 ATTGCAATAAAGGGCGAGATCGTAATTCGTCCAATGATGTATGTGGCTTTAACATATGAT 714 consensus_614#1 ------------------------------------------------------------ consensus_614#0 CATCGATTAATTGATGGACGTGAGGCTGTGATGTTTTTAAGAAAGATCAAGGCTGCTGTA 774 consensus_614#1 ------------------------------------------------------------ consensus_614#0 GAAGATCCCAGAATTATATTAGCTGGACTTTGAGCATCGTAAATATTTTTATTAAATCGC 834 consensus_614#1 ------------------------------------------------------------ consensus_614#0 TTCAAACACGCCTCTCATCATATCTAAAACATTTTGTACACGTTGTATTATATTGTGTTC 894 consensus_614#1 ------------------------------------------------------------ consensus_614#0 ATCAAAACAACATATTCTTAAATACTTATTAATCATTGTGATAAATGAAAGTAAAAAGAG 954 consensus_614#1 ------------------------------------------------------------ consensus_614#0 AAAAATATTATACGCGAAATAACACGAAAAAAAA 988 consensus_614#1 ---------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |