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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence
[GGTCTATTCTACACATCTTACGAATTATTACGATGAGGTTCCTCTCTGTTGAGATTCGAAAATAGTTCATCAAGTGTGGAGGTGGGAAATCAACAATCGATCAATGGCGGTCGATATTTTAGATGAAGACCACTTCGCGGTGAGTGCAATCGTCACCGTTGGTATGCAAATTATATTCTTCACAATTGCGGCGACCTTCCAGCTGGACAAGCTAACAGATTTTGCCGGCGGCACGAACTTTATCATCCTCGCCCTTCTCACTTTCTTTCTCGGCCAAGTAGGCAAGCCTTATGATAGTAGACAACTTATGGTCACTATATTTGTTTGCTTGTGGGGTGTTCGTCTTTCTGGATATCTATTATATCGGATTATTAAAATTGGTCGCGATAAAAGATTTGAAGATCGTCGCAGTAATGTGATTCGTTTTGCTGTATTTTGGACATTTCAGGCTGGATGGGTCTATGTTGTGAGTTTACCAGTAATTATCATTAATTCACCACGACACAAAATACCACCAGCTCCTAAAACGATGACAACATTGGATAGCACTGGTACGCGGACTTTTCGAGACTGGTTTATTAGCTGAAACTTATGCCGATTTGC]
[+] EMBL BE844557 [GGTCTATTCTACACATCTTACGAATTATTACGATGAGGTTCCTCTCTGTTGAGATTCGAAAATAGTTCATCAAGTGTGGAGGTGGGAAATCAACAATCGATCAATGGCGGTCGATATTTTAGATGAAGACCACTTCGCGGTGAGTGCAATCGTCACCGTTGGTATGCAAATTATATTCTTCACAATTGCGGCGACCTTCCAGCTGGACAAGCTAACAGATTTTGCCGGCGGCACGAACTTTATCATCCTCGCCCTTCTCACTTTCTTTCTCGGCCAAGTAGGCAAGCCTTATGATAGTAGACAACTTATGGTCACTATATTTGTTTGCTTGTGGGGTGTTCGTCTTTCTGGATATCTATTATATCGGATTATTAAAATTGGTCGCGATAAAAGATTTGAAGATCG CGCAGTAATGTGATTCGTTTTGCTGTATTTTGGACATTTCAGGCTGGATGGGTCTATGTTGTGAGTTTACCAGTACTTATCATTAATTCACCACGACACAAAATACCACCAGCTCCTAAAACGATGACAACATTGGATAGCACTGGTACGCGGACTTTTCGAGACTGGTTTATTAGCTGAAACTTATGCCGATTTGC]
[+] EMBL BI516104 [ TCGAAAATAGTTCATCAAGTGTGGAGGTGGGAAATCAACAATCGATCAATGGCGGTCGATATTTTAGATGAAGACCACTTCGCGGTGAGTGCAATCGTCACCGTTGGTATGCAAATTATATTCTTCACAATTGCGGCGACCTTCCAGCTGGACAAGCTAACAGATTTTGCCGGCGGCACGAACTTTATCATCCTCGCCCTTCTCACTTTCTTTCTCGGCCAAGTAGGCAAGCCTTATGATAGTAGACAACTTATGGTCACTATATTTGTTTGCTTGTGGGGTGTTCGTCTTTCTGGATATCTATTATATCGGATTATTAAAATTGGTCGCGATAAAAGATTTGAAGATCGTCGCAGTAATGTGATTCGTTTTGCTGTATTTTGGACATTTCAGGCTGTATGGGTCTATGTTGTGAGTTTACCAGTAATTATCATTAATTCACCACGACACAAAATACCACCAGCTCCTAAAACGATGACAACATTGGATAGCACTGGTAC ]
consensusID : consensus_622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[AGCACTGGTACGGGACTTTTCGTGACTGGTTTATTAGCTGAAACTTATGCCGATTTGCAGAAATTTTCTTTCAAACAAGATCCAGTGAATAATGGCAAATGGTGTAATGACGGATTATGGAGATTATCCAGACACCCAAATTATTTTGGAGAAATAGTAGTATGGTGGGGTATCTTTGTAATATCTTTGAATGTAATTGAAGGCATTGAATGGATTGCTATAGCTTCCCCAATATTCACTACTTTCATCATTCTATTCTTATCTGGAATGCCTCTATTGGAAAGAGCTTCCGATGAGAGATATCGCGATAATGCCGAATATCGCTATTACAAACTATCTACATCGCCATTAATACCAATACCACCATCCATATATGTTGAAGTGCCTCATTTCCTAAAATTTCTTTTCTGTTGCGAATTTCCACTTTATGATTCGTTAGATGTAAAACCACGATCAGCTGTCACTGAATCAACATCAATAAGTCTTGCTGCGTCTACGTAGCTATAGTCACACGCCGGACAACCGAATTCGAAGTCCGGCGTG]
[+] EMBL BI509706 [AGCACTGGTACGGGACTTTTCGTGACTGGTTTATTAGCTGAAACTTATGCCGATTTGCAGAAATTTTCTTTCAAACAAGATCCAGTGAATAATGGCAAATGGTGTAATGACGGATTATGGAGATTATCCAGACACCCAAATTATTTTGGAGAAATAGTAGTATGGTGGGGTATCTTTGTAATATCTTTGAATGTAATTGAAGGCATTGAATGGATTGCTATAGCTTCCCCAATATTCACTACTTTCATCATTCTATTCTTATCTGGAATGCCTCTATTGGAAAGAGCTTCCGATGAGAGATATCGCGATAATGCCGAATATCGCTATTACAAACTATCTACATCGCCATTAATACCAATACCACCATCCATATATGTTGAAGTGCCTCATTTCCTAAAATTTCTTTTCTGTTGCGAATTTCCACTTTATGATTCGTTAGATGTAAAACCACGATCAGCTGTCACTGAATCAACATCAATAAGTCTTGCTGCGTCTACGTAGCTATAGTCACACGCCGGACAACCGAATTCGAAGTCCGGCGTG]
consensusID : consensus_622#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[TTTTTTATATTTATTAATATTTTTTAACATTATCTTTAAGATTTTTAAATTCCTAAACTTTAAAAAGTACCAAATAAGTATAGTTTTTTAATTAAATTTAAAAAATATAAATTTTTTCAATTCATTTAATAGATTAGCAAAATATAGTAATACGCATCTATTTTCATAATCATTATTTTACATATTTTTTACTTTTTTTGTATAACAGCATTTTATATATTTTCTGAACTCAAATCACAAAGAACATCAACATTTTCAATTTAAAAAATGTAAAAAATGCAATCACAACATATTAACGTTTAAATGACATAATATATGCTTTTTCAATTTATTTCAATTTCTAATTACGTAGAATTTTATTTGCATAACCTCTAGTTAAGTTATTATTCTTAACCGAGTGGAATAATGAAAGACGATGCGAACAATAAAATGCAAAGAATCGTAACAGCCTCAAAAGGCTGTGCTAGTCATAGATGACTGCACGCCGGACTTCGAATTCGGTTGTCCGGCGGGTGACTA]
[+] EMBL BE844558 [TTTTTTATATTTATTAATATTTTTTAACATTATCTTTAAGATTTTTAAATTCCTAAACTTTAAAAAGTACCAAATAAGTATAGTTTTTTAATTAAATTTAAAAAATATAAATTTTTTCAATTCATTTAATAGATTAGCAAAATATAGTAATACGCATCTATTTTCATAATCATTATTTTACATATTTTTTACTTTTTTTGTATAACAGCATTTTATATATTTTCTGAACTCAAATCACAAAGAACATCAACATTTTCAATTTAAAAAATGTAAAAAATGCAATCACAACATATTAACGTTTAAATGACATAATATATGCTTTTTCAATTTATTTCAATTTCTAATTACGTAGAATTTTATTTGCATAACCTCTAGTTAAGTTATTATTCTTAACCGAGTGGAATAATGAAAGACGATGCGAACAATAAAATGCAAAGAATCGTAACAGCCTCAAAAGGCTGTGCTAGTCATAGATGACTGCACGCCGGACTTCGAATTCGGTTGTCCGGCGGGTGACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_622#0 --GGTCTATTCTACACATCTTACGAATTATTACGATGAGGTTCCTCTC-TGTTGAGATTC 57
consensus_622#1 AGCACTGGTACGGGACTTTTCGTGACTGGTTT--ATTAGCTGAAACTTATGCCGATTTGC 58
consensus_622#2 ---------------TTTTTTAT-ATTTATTAATATTTTTTAACATTATCTTTAAGATTT 44
* * * * ** ** * * * *
consensus_622#0 GAAAATAGTTCATCAAGTGTGGA--GGTGGGAAATCAACAATCGATCAATGGCGGTCGAT 115
consensus_622#1 AGAAATTTTCTTTCAAACAAGATCCAGTGAATAATGGCAAATGGTGTAATGACGG----- 113
consensus_622#2 TTAAAT----TCCTAAACTTTAAAAAGTACCAAAT-AAGTATAGTTTTTTAATTAA---- 95
**** ** ** *** ** * *
consensus_622#0 ATTTTAGATGAAGACCACTTCGCGGTGAGTGCAATCGTCACCGTTGGTATGCAAATTATA 175
consensus_622#1 ATT----ATGGAGATTATC---CAGACACCCAAATTATT----TTGGAGAAATAGTAGTA 162
consensus_622#2 ATT-----TAAAAAATATA----AATTTTTTCAATTCAT----TTAATAGATTAGCAAAA 142
*** * * * * *** ** * *
consensus_622#0 TTCTTCACAATTGCGGCGACCTTCCAGCTGGACAAGCTAACAGATTTTGCCGGCGGCACG 235
consensus_622#1 TGGTGGGGTATCTTTGTAATATCTTTGAATG-TAATTGAAGGCATTGAATGGATTGCTAT 221
consensus_622#2 TATAGTAATA-CGCATCTATTTTCATAATCA-TTATTTTACATATTTTTTACTTTTTTTG 200
* * * * * * ***
consensus_622#0 AACTTTATCA-TCCTCGCCCTTCTCACTTTCTTTCTCGGCCAAGTAGGCAAGCCTTATGA 294
consensus_622#1 AGCTTCCCCAATATTCACTACTTTCA---TCATTCTATTCTTATCTGGAATGCCTCT--A 276
consensus_622#2 TATAACAGCATTTTATATATTTTCTGAACTCAAATCACAAAGAACATCAACATTTTC-AA 259
** * * ** * * * *
consensus_622#0 TAGTAGACAACTTATGGTCACTATATTTGTTTGCTTGTGGGGTGTTCGTCTTTCTGGATA 354
consensus_622#1 TTGGAAAGAGCTTCCGATGAGAGATATCGCGATAATGCCGAATATCGCTATTACAAACTA 336
consensus_622#2 TTTAAAAAA---TGTAAAAAATGCAATCACAACATATT--AACGTTTAAATGACATAATA 314
* * * * * * * * * * **
consensus_622#0 TCTATTATATCGG-ATTATTAAAATTGGTCGCGATAAAAGATTTGAAGATCGTCGCAGTA 413
consensus_622#1 TCTACATCGCCATTAATACCAATACCACCATCCATATATG--TTGAAG--TGCCTCATTT 392
consensus_622#2 TATGCTTTTTCA-----ATTTATTTCAATTTCTAATTACG--TAGAA-----TTTTATTT 362
* * * * * * * * * * *** * *
consensus_622#0 ATGTGATTCGTTTTGCTGTATTTTGGACATTTCAGGCTGGATGGGTCTAT-GTTGTGAGT 472
consensus_622#1 CCTAAAATTTCTTTTCTGT----TGCGAATTTCCA-CTTTATGATTCGTTAGATGTAAAA 447
consensus_622#2 GCATAACCTCTAGTTAAGT----TATTATTCTTAACCGAGTGGAATAATGAAAGACGATG 418
* * ** * * * * * * *
consensus_622#0 TTACCAGTAATTATCATTAATTCACCACGACACAAAATACCACCAGCTCCTAAAACGATG 532
consensus_622#1 CCACGATCAGCTGTCACTGAATCA--ACATCAATAAGTCTTGCTGCGTCT----ACGTAG 501
consensus_622#2 CGAACAATAAAATGCAAAGAATCGTAACAGCCTCAAAAGGCTGTGCTAGT-----CATAG 473
* * * ** * ** ** * ** * *
consensus_622#0 ACAACATTGGATAGCACTGGTACGCGGACTTTTCGAGACTGGTTTATTAGCTGAAACTTA 592
consensus_622#1 CTATAGTCACACGCCG--GACAACCGAA--TTCGAAGTCCGGCGTG-------------- 543
consensus_622#2 --ATGACTGCACGCCG--GAC-TTCGAA-TTCGGTTGTCCGGCGGGTGACTA-------- 519
* * * * ** * * * * **
consensus_622#0 TGCCGATTTGC 603
consensus_622#1 -----------
consensus_622#2 -----------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |