These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence [AAAAAAAAATTAATAAGAATCCTGTGTTGATCCTCCGGTGTTTAAGAAAAAACTATGAGGTTTTTGTAGCGAGATAATTAATTGTGCGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGTTGATAATGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAGACGATAAGAGGGGAAGGGTGCGAATGGAAGAAAGAGAAGGAAGAAAGAGAATAACAAATTCTTACACTCTTTTAATCATTGTTAATTAATTAATTAATTAATTAATCACGATCCTATCGATACTTAAAATGAGACGAGTAAAATAATAATTATTATTATATACACAAAACTATTATTATATTCATATTTTTGCTTATTACATATTTAAGAAAATATTAAACGAGGGCTAGCGAGTATAGTATACATTACTAAAAGA] [-] EMBL BE844409 [AAAAAAAAATTAATAAGAATCCTGTGTTGATCCTCCGGTGTTTAAGAAAAAACTATGAGGTTTTTGTAGCGAGATAATTAATTGTGCGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGTTGATAATGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAAAAG AAAAAAAAAAGAGACGATAAGAGGGGAAGGGTGCGAATGGAAGAAAGAGAAGGAAGAAAGAGAATAACAAATTCTTACACTCTTTTAATCATTGTTAATTAATTAATTAATTAATTAATCACGATCCTATCG ] [+] EMBL BI508582 [ GATAATTAATTGTGCGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGTTGATAATGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAGACGATAAGAGGGGATGGGTGCGAATGGAAGAAAGAGAAGGAAGAAAGAGAATAACAAATTCTTACACTCTTTTAATCATTGTTAATTAATTAATTAATTAATTAATCACGATCCTATCGATACTTAAAATGAGACGAGTAAAATAATAATTATTATTATATACACAAAACTATTATTATATTCATATTTTTGCTTATTACATATTTAAGAAAATATTAAACGAGGGCTAGCGAGTATAGTATACATTACTAAAAGA] consensusID : consensus_628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGCGGAAGAAGAGAGACGAACGAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGACAGGTTCAGTGTTGTAACTTAGGATATAAGAAGAATAAGAGCTCCTGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGAACGAGAGAAAGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGCGTGTGTGTGTGTGTGTGTCAGGAAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGATTCGAGAAAGGACTGAGACTGAGAAAGAAAGAGAACCAAGGTCGAAGAGGTACAGAGAACACTAAGAGATAGAGGTAGACGA] [+] EMBL BI507161 [TAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGCGGAAGAAGAGAGACGAACGAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGACAGGTTCAGTGTTGTAACTTAGGATATAAGAAGAATAAGAGCTCCTGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGAACGAGAGAAAGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGCGTGTGTGTGTGTGTGTGTCAGGAAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGATTCGAGAAAGGACTGAGACTGAGAAAGAAAGAGAACCAAGGTCGAAGAGGTACAGAGAACACTAAGAGATAGAGGTAGACGA] consensusID : consensus_628#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [GAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGACAGGTTCAGTGTTGTAATTTAGGATATAAGAAGAATAAGAGCTTCTGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGGACGAGAGAAGGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGTGTGTGTGTGTGTGTCNNNNAGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGT] [+] EMBL BI503657 [GAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGACAGGTTCAGTGTTGTAATTTAGGATATAAGAAGAATAAGAGCTTCTGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGGACGAGAGAAGGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGTGTGTGTGTGTGTGTCNNNNAGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_628#1 TAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGCGGAAG 60 consensus_628#2 ------------------------------------------------------------ consensus_628#0 ----------------------------------AAAAAAAAATTAATAAGAATCCTGTG 26 consensus_628#1 AAGAGAGACGAACGAGAAGGCAAAGGATCGAACGTGGTTAAAG-GCGATCGTAAAACGCG 119 consensus_628#2 -------------GAGAAGGCAAAGGATCGAACGTGGTTAAAG-GCGATCGTAAAACGCG 46 consensus_628#0 TTGATCCTCCGGTGTTTAAGAAAAAACTATGAGGTTTTTGTAGCGAGATAATTAATTGTG 86 * * * *** * * ** ** ** * *** * ** * * consensus_628#1 TCAGCTGTGGGCGA-ATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATT 178 consensus_628#2 TCAGCTGTGGGCGA-ATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATT 105 consensus_628#0 CGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGA 146 * * * * ** * * ** * * **** consensus_628#1 TTGTCCCTCCAGGGACAGGTTCAGTGTTGTAACTTAGGATATAAGAAGAATAAGAGCTCC 238 consensus_628#2 TTGTCCCTCCAGGGACAGGTTCAGTGTTGTAATTTAGGATATAAGAAGAATAAGAGCTTC 165 consensus_628#0 GTCAATTCCAACGAGCATTTTCA----TGCCATTAAGCTTAAAGAATTATTAGTTGATAA 202 * * * * ** **** ** * * ** ** * * * ** * * consensus_628#1 TGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGAACGA---- 294 consensus_628#2 TGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGGACGA---- 221 consensus_628#0 TGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAGACGAT 262 ** * ** ***** ** ** * ** **** ** ** ** *** ** consensus_628#1 GAGAAAGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGA 354 consensus_628#2 GAGAAGGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAG----- 276 consensus_628#0 AAGAGGGGAAGGGTGCGAATGGAAGAAAGAG-AAGGAAGAAAGAGAATAACAAATTCTTA 321 *** * ** *** * ** *** **** ** *** ***** * * * consensus_628#1 GAGCGCTTGCGTGCGTGCGTGTGTGTGTGT------GTGTGTCAGGAAG----------- 397 consensus_628#2 ---CGCTTGCGTGCGTGTGTGTGTGTGTGT------GTCNNNNAGAGAA----------- 316 consensus_628#0 CACTCTTTTAATCATTGTTAATTAATTAATTAATTAATTAATCACGATCCTATCGATACT 381 ** * ** * * * * * consensus_628#1 -AGAAAGAGAGAGAGAGAGAGAAAGAGAG-ATTCGAGAAAGGACTGAGACTGAGAAAGAA 455 consensus_628#2 -AGAGAGAAAAGAAATGAATTATGATAAA-ACTGTACACACGAGTCAATTCCAACGAGCA 374 consensus_628#0 TAAAATGAGACGAGTAAAATAATAATTATTATTATATACACAAAACTATTATTATATTCA 441 * * ** * * * * * * * * * * * consensus_628#1 AGAGAACCAAGGTCGAAGAGGTACAGAGAACACTAAGAGATAGAGGTAGACGA------- 508 consensus_628#2 TT----TTCATGCCATTAAGCTTAAAGAATTATTAGT----------------------- 407 consensus_628#0 TATTTTTGCTTATTACATA-TTTAAGAAAATATTAAACGAGGGCTAGCGAGTATAGTATA 500 * * * * * ** consensus_628#1 ------------- consensus_628#2 ------------- consensus_628#0 CATTACTAAAAGA 513 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |