These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1223 fasta sequence [TTAGCCGTTCCGGCATATGAGTCGTCGTTCACGCGACTGGGCCGTGTTTCACAATAATCTCTCGTGTAATCTCTCGTGTATTCGATAACTAATTGTTTTTTATTAGTGCGATTATCTCATTATCTCATGGTGTGATCGTTGACTGAAACCACTCAAAGTTCACTCGACCATTGAACTTTGATTATTACGATATTTTTTTTCCTCCCGGATTTAACGACAATTTAAGCGATTGTATACATATATTTTTTCATGAAAAAAAAAAAAAAGAAAACACTTCTCACTCGTCCCTTCATTCTTTTCGCCTGTTACAGAAGAATAGTATGTATAAAGTACTTCACAATCAAGACATAAAACACGAGTGCTCGCGGTCAGGGGGACTGCACGCTTATCCTGATCATTTCAGGGAACCTAAAAAGCTTTACCTCTAAACCAGCCGTCTGCTAAATGATCATTTAAAGGTTCCTGTCCTCTGGTAGGACTTTGTATATAGTGTAAATATCGCTTTTCTAACAAAGGATCTCGCTCAAATAAAAGAAAAAAAAAAAAAAAAAACGAGCAAGCTCGAAGAATCGAAACAAGTCACGCGGGGATTTCAAGGAGTCGAGAGAATTCGAAAGATTGCACTATTCCAAACCCCATATATAATATCCGACGCATGCATCAACCTAGAACGCACTGACTCAGTCAACTAGTTCGCAAAACGCAACAAAAGAAATAAAGGAAAGAGGAAGATTGTTGGGAGAGAAAGAACGAGTGAAAAGAACGAGAGCACAAGATGAAGCAACAAGCGTCGGAAGAATTCCCTTTATGGATAAAGTTACTTTCCGCAGGCACAGCAGCCTGTATCGCTGATTTAGCGACGTTTCCTTTGGACACCGCCAAAGTCAGAATGCAGATTGCCGGAGAAAGTCGTCCTCTTCTATTGGCGACTACGGATGGCTCCATGCTCGCGATGCGAAATACGCAACCAGGATTATGGAGGACAGTAAAGAACATCGTCAGACTCGAAGGAGCAAGGTACGTTATTCATGATCCTATAGTAAATTTAAGAACAAGGGGTAGGTAAAAACCGATTACATTATTGTACATAAATATAATTAGCGTATACATATATATACATATTTCTTCCGATTCGAATCAAAGTTTATATACACAGCGGGCACTTTTTCGTGCCCGCTCGAAATATGATAATTATTTGATTACGTAATTCACTTCAACTTGAA] [-] EMBL BI509202 [TTAGCCGTTCCGGCATATGAGTCGTCGTTCACGCGACTGGGCCGTGTTTCACAATAATCTCTCGTGTAATCTCTCGTGTATTCGATAACTAATTGTTTTTTATTAGTGCGATTATCTCATTATCTCATGGTGTGATCGTTGACTGAAACCACTCAAAGTTCACTCGACCATTGAACTTTGATTATTACGATATTTTTTTTCCTCCCGGATTTAACGACAATTTAAGCGATTGTATACATATATTTTTTCATGAAAAAAAAAAAAAAGAAAACACTTCTCACTCGTCCCTTCATTCTTTTCGCCTGTTACAGAAGAATAGTATGTATAAAGTACTTCACAATCAAGACATAAAACACGAGTGCTCGCGGTCAGGGGGACTGCACGCTTATCCTGATCATTTCAGGGAACCTAAAAAGCTTTACCTCTAAACCAGCCGTCTGCTAAATGATCATTTAAAGGTTCCTGTCCTCTGGTAGGACTTTGTATATAGTGTAAAT ] [+] EMBL BE844284 [ TAGTATGTATAAAGTACTTCACAATCAAGACATAAAACACGAGTGCTCGCGGTCAGGGGGACTGCACGCTTATCCTGATCATTTCAGGGAACCTAAAAAGCTTTACCTCTAAACCAGCCGTCTGCTAAATGATCATTTAAAGGTTCCTGTCCTCTGGTAGGACTTTGTATATAGTGTAAATATCGCTTTTCTAACAAAGGATCTCGCTCAAATAAAAGAAAAAAAAAAAAAAAAAACGAGCAAGCTCGAAGAATCGAAACAAGTCACGCGGGGATTTCAAGGAGTCGAGAGAATTCGAAAGATTGCACTATTCCAAACCCCATATATAATATCCGACGCATGCATCAACCTAGAACGCACTGACTCAGTCAACTAGTTCGCAAAACGCAACAAAAGAAATAAAGGAAAGAGGAAGATTGTTGGGAGAGAAAGAACGAGTGAAAAGAACGAGAGCACAAGATGAAGCAACAAGCGTCGGAAGAATTCCCTTTATGGATAAAGTTACTTTCCGCAGGCACAGCAGCCTGTATCGCTGATTTAGCGACGTTTCCTTTGGACACCGCCAAAGTCAGAATGCAGATTGCCGGAGAAAGTCGTCCTCTTCTATTGGCGACTACGGAT ] [+] EMBL BI505193 [ AGAACGCACTGACTCAGTCAACTAGTTCGCAAAACGCAACAAAAGAAATAAAGGAAAGAGGAAGATTGTTGGGAGAGAAAGAACGAGTGAAAAGAACGAGAGCACAAGATGAAGCAACAAGCGTCGGAAGAATTCCCTTTATGGATAAAGTTACTTTCCGCAGGCACAGCAGCCTGTATCGCTGATTTAGCGACGTTTCCTTTGGACACCGCCAAAGTCAGAATGCAGATTGCCGGAGAAAGTCGTCCTCTTCTATTGGCGACTACGGATGGCTCCATGCTCGCGATGCGAAATACGCAACCAGGATTATGGAGGACAGTAAAGAACATCGTCAGACTCGAAGGAGCAAGGTACGTTATTCATGATCCTATAGTAAATTTAAGAACAAGGGGTAGGTAAAAACCGATTACATTATTGTACATAAATATAATTAGCGTATACATATATATACATATTTCTTCCGATTCGAATCAAAGTTTATATACACAGCGGGCACTTTTTCGTGCCCGCTCGAAATATGATAATTATTTGATTACGTAATTCACTTCAACTTGAA] consensusID : consensus_637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [AGCGACGTTTCCTTTGGACACCGCCAAAGTCAGAATGCAGGTAAATATAATGCATGTTTAATTTATCGATAAGCTTTTGTTCTTACAAATAAAAATTTTCAAAGTCTAGAGATCTAGAGAAAATGTTACTTATTGCAACTTAAGATATAAAGTTTAAATATCTCATTCAATATTTAGTATAAATTTCNNNTTTTTATTTACAGTGTGCTTGCATAATTACAACTTCTTTTTAATTTTTCTTAGGCTATAATATATTATGAAACAATGCAAAATCATGTATTTCATATTAATTTTTAAAATTCATGTTTGATTATACGTATTAATCATCTTGATATCCTTTCTTAGAAAATTTCCATTGTTTCTTACACACGATTAATATTATCATAAATAATTGTATCGCGTAATCAATAAAGTCAATTCTTTTTCATACTTGATTTACTCGATTTCCATTTGAATTCGTTACATCTTTTCAGGATTCAGAGTGGGGATTCAAGGATGTTTGTACAAATATTCTACATGCTTTTTTCCTCTACATAATATTTATACATTGTAATTGGGAAAGAGATGCTTCTTATTACTTAAAATGTTATACTCGCGCAAAATATAA] [+] EMBL BI504457 [AGCGACGTTTCCTTTGGACACCGCCAAAGTCAGAATGCAGGTAAATATAATGCATGTTTAATTTATCGATAAGCTTTTGTTCTTACAAATAAAAATTTTCAAAGTCTAGAGATCTAGAGAAAATGTTACTTATTGCAACTTAAGATATAAAGTTTAAATATCTCATTCAATATTTAGTATAAATTTCNNNTTTTTATTTACAGTGTGCTTGCATAATTACAACTTCTTTTTAATTTTTCTTAGGCTATAATATATTATGAAACAATGCAAAATCATGTATTTCATATTAATTTTTAAAATTCATGTTTGATTATACGTATTAATCATCTTGATATCCTTTCTTAGAAAATTTCCATTGTTTCTTACACACGATTAATATTATCATAAATAATTGTATCGCGTAATCAATAAAGTCAATTCTTTTTCATACTTGATTTACTCGATTTCCATTTGAATTCGTTACATCTTTTCAGGATTCAGAGTGGGGATTCAAGGATGTTTGTACAAATATTCTACATGCTTTTTTCCTCTACATAATATTTATACATTGTAATTGGGAAAGAGATGCTTCTTATTACTTAAAATGTTATACTCGCGCAAAATATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_637#0 TTAGCCGTTCCGGCATATGAGTCGTCGTTCACGCGACTGGGCCGTGTTTCACAATAATCT 60 consensus_637#1 ------------------------------------------------------------ consensus_637#0 CTCGTGTAATCTCTCGTGTATTCGATAACTAATTGTTTTTTATTAGTGCGATTATCTCAT 120 consensus_637#1 ------------------------------------------------------------ consensus_637#0 TATCTCATGGTGTGATCGTTGACTGAAACCACTCAAAGTTCACTCGACCATTGAACTTTG 180 consensus_637#1 ------------------------------------------------------------ consensus_637#0 ATTATTACGATATTTTTTTTCCTCCCGGATTTAACGACAATTTAAGCGATTGTATACATA 240 consensus_637#1 ------------------------------------------------------------ consensus_637#0 TATTTTTTCATGAAAAAAAAAAAAAAGAAAACACTTCTCACTCGTCCCTTCATTCTTTTC 300 consensus_637#1 ------------------------------------------------------------ consensus_637#0 GCCTGTTACAGAAGAATAGTATGTATAAAGTACTTCACAATCAAGACATAAAACACGAGT 360 consensus_637#1 ------------------------------------------------------------ consensus_637#0 GCTCGCGGTCAGGGGGACTGCACGCTTATCCTGATCATTTCAGGGAACCTAAAAAGCTTT 420 consensus_637#1 ------------------------------------------------------------ consensus_637#0 ACCTCTAAACCAGCCGTCTGCTAAATGATCATTTAAAGGTTCCTGTCCTCTGGTAGGACT 480 consensus_637#1 ------------------------------------------------------------ consensus_637#0 TTGTATATAGTGTAAATATCGCTTTTCTAACAAAGGATCTCGCTCAAATAAAAGAAAAAA 540 consensus_637#1 --------------AGCGACGTTTCCTTTGGACACCGCCAAAGTCAGAATGCAGGTAAAT 46 * ** ** * * * * *** * ** *** consensus_637#0 AAAAAAAAAAAACGAGCAAGCTCGAAGAATCGAAACAAGTCACGCGGGGATTTCAAGGAG 600 consensus_637#1 ATAATGCATGTTTAATTTATCGATAAGCTTTTGTTCTTACAAATAAAAATTTTCAA--AG 104 * ** * * * * *** * * * ****** ** consensus_637#0 TCGAGAGAATTCGAAAGATTGC-ACTATTCCAAACCCCATATATAATATCCGACGCATGC 659 consensus_637#1 TCTAGAGATCTAGAGAAAATGTTACTTATTGCAACTTAAGATATAAAGTTTAA---ATAT 161 ** ***** * ** * * ** *** * *** * ****** * * ** consensus_637#0 ATCAACCTAGAAC--GCACTGACTCAGTCAACTAGTTCGCAAAACGCAACAAAAGAAATA 717 consensus_637#1 CTCATTCAATATTTAGTATAAATTTCNNNTTTTTATTTACAGTGTGCTTGCATAATTACA 221 *** * * * * * * * * ** ** ** * * * * consensus_637#0 AAGGAAAGAGGAAGATTGTTGGGAGAGAAAGAACGAGTGAAAAGAACGAGAGCACAAGAT 777 consensus_637#1 ACTTCTTTTTAATTTTTCTTAGGCTATAATATATTATGAAACAATGCAAAATCATGT-AT 280 * * ** ** ** * ** * * ** * * * * ** ** consensus_637#0 GAAGCAACAAGCGTCGGAAGAATTCCCTTTATGGATAAAGTTACTTTCCGCAGGCACAGC 837 consensus_637#1 TTCATATTAATTTTTAAAA----TTCATGTTTGATTATACGTATTAATCAT---CTTGAT 333 * ** * ** * * * * ** ** * ** * * * consensus_637#0 AGCCTGTATCGCTGATTTAGCGACGTTTCCTTTGGACACCGCCAAAGTCAGAATGCA-GA 896 consensus_637#1 ATCCTTTCTTAGAAAATTTCCATTGTTTC--TTACACACGATTAATATTATCATAAATAA 391 * *** * * * ** * ***** ** **** ** * * ** * * consensus_637#0 TTGCCGGAGAAAGTCGTCCTCTTCTATTGGCGACTACGGATGGCTC-CATGCTCGCGATG 955 consensus_637#1 TTGTATCGCGTAATCAATAAAGTCAATTCTTTTTCATACTTGATTTACTCGATTTCCATT 451 *** * ** ** *** * ** * * * * * ** consensus_637#0 CGAAATACGCAACCAGGATTATGGAGGACAGTAAAGAACATCGTCAGACTCGAAGGAGCA 1015 consensus_637#1 TGAATT-CGTTACATCTTTTCAGGATTCAGAGTGGGGATTCAAGGATGTTTGTACAAATA 510 *** * ** ** ** *** * * * * * * * * consensus_637#0 AGGTACGTTATTCATGATCCTATAGTAAATTTAAGAACAAGGGGTAGGTAAAAACCGATT 1075 consensus_637#1 TTCTACATGCTTTTTTCCTCTACATAATATTTATACATTGTAATTGGGAAAGAGATGCTT 570 *** * ** * *** * * ***** * * ** ** * * ** consensus_637#0 ACATTATTGTACATAAATATAATTAGCGTATACATATATATACATATTTCTTCCGATTCG 1135 consensus_637#1 C--TTATTACTTA-AAATGTTATACTCGCGCA-AAATATAA------------------- 607 ***** * **** * ** ** * * ***** consensus_637#0 AATCAAAGTTTATATACACAGCGGGCACTTTTTCGTGCCCGCTCGAAATATGATAATTAT 1195 consensus_637#1 ------------------------------------------------------------ consensus_637#0 TTGATTACGTAATTCACTTCAACTTGAA 1223 consensus_637#1 ---------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |