These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_64#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 688 fasta sequence [ACGGGAAATAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATCATTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTGAGATGGAGGCAAGACGTATCTGCGTATGAATTGTCGGCTGACAAATCCGTGCTCGTCTTGTCTCTCCTCGTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGTAATCTCTTCCGGTGAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGCCCGAAGTTTAAAAGGTCGAACAGGGAGATATCTTTTATTGGAGCACGATGTTACGTGTAATGAATATGATATTTCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACGCATCCATTCCACATCCGATTCTGGCCTCGCATCTTATAATATACCATTGATTCTATTAAATCATCATTTATTGCGAAAATTTCAAATATCAAGCTTTTTCATCACCGATTCAGGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAG] [+] EMBL BE844495 [ACGGGAAATAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATCATTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTGAGATGGAGGCAAGACGTATCTGCGTATGAATTGTCGGCTGACAAATCCGTGCTCGTCTTGTCTCTCCTCGTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGTAATCTCTTCCGGTGAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGCCCGAAGTTTAAAAGGTCGAACAGGGAGATATCTTTTATTGGAGCACGATGTTACGTGTAATGAATATGATATTTCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACGCATCCATTCCACATCCGATTCTGGCCTCGCATCTTATAATATACCATTGATTCTATTAAATCATCATTTATTGCGAAAATTTCAAATATCAAGCTTTTTCATCACCGATTCAGGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAG] [+] EMBL BI511460 [ GCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACA ACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTGAGATGGAGGCAAGACGTATCTGCGTATGAATTGTCGGCTGACAAATCCGTGCTCGTCTTGTCTCTCCTCGTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGTAATCTCTTCCGGTGAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGCCCGAAGTTTAAAAGGTCGAGCAGGGAGATATCTTTTATTGGAGCACGATGTTACGTGTAACGAATATGATATTTCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACGCATCCATTCCACATCCGATTCTGGCCTC ] [+] EMBL BI516440 [ CACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTGAGATGGAGGCAAGACGTATCTGCGTATGAATTGTCGGCTGACAAATCCGTGCTCGTCTTGTCTCTCCTCGTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGTAATCTCTTCCGGTGAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGCCCGAAGTTTAAAAGGTCGAACAGGGAGATATCTTTTATTGGAGCACGATGTTACGTGTAATGAATATGATATTTCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACGCATCCATTCCACATCCGATTCTGGCCTCGCATCTTATAATATACCATTGATTCTATTAAATCATC ] consensusID : consensus_64#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 603 fasta sequence [GTGAACACCCGAAGACCCACTAACCAGTGAATATACCTCTACTTCTTTTACGTGGTCCACGAGGCTGCTGACAATACGACGTGAAAATGTAGACGAGACGGATTCGGTGCGGAGCGCGACAGTTTACCTGCACCCTGCGGGGTCGGTGCTTGAACAATCCGTACGCAACCATAATCTGATTTGATTAGAGAGTTCGAAATTTCTTCACACATTTGAAGTATTTAAGAAAAGCACTTCGAGTTATATGCAGTAGTTTAGAGCAGATTCGTAGTTTGAAGTCGAATAAATCGTCGGCTTCGTCTTGTCGGAACGAATACTCTACCACAAGAACATATGGAACTTTGGAGTCGAGAACGAAAAATAAAATCAAAACGGAACGGGAAAAAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATCACTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCACCCAAAAAAAA] [+] EMBL BI946510 [GTGAACACCCGAAGACCCACTAACCAGTGAATATACCTCTACTTCTTTTACGTGGTCCACGAGGCTGCTGACAATACGACGTGAAAATGTAGACGAGACGGATTCGGTGCGGAGCGCGACAGTTTACCTGCACCCTGCGGGGTCGGTGCTTGAACAATCCGTACGCAACCATAATCTGATTTGATTAGAGAGTTCGAAATTTCTTCACACATTTGAAGTATTTAAGAAAAGCACTTCAAGTTATATGCAGTAGTTTAGAGCAGATTCGTAGTTTGAAGTCGAATAAATCGTCGGCTTCGTCTTGTCGGAACGAATACTCTACCACAAGAACATATGGAACTTTGGAGTCGAGAACGAAAAATAAAATCAAAACGGAACGGGAAAA ] [+] EMBL BI946472 [ ACACCCGAAGACCCACTAACCAGTGAATATACCTCTACTTCTTTTACGTGGTCCACGAGGCTGCTGACAATACGACGTGAAAATGTAGACGAGACGGATTCGGTGCGGAGCGCGACAGTTTACCTGCACCCTGCGGGGTCGGAGCTTGAACAATCCGGA ] [+] EMBL BI511826 [ GAGACGGATTCGGTGCGGAGCGCGACAGTTTACCTGCACCCTGCGGGGTCGGTGCTTGAACAATCCGTACGCAACCATAATCTGATTTGATTAGAGAGTTCGAAATTTCTTCACACATTTGAAGTATTTAAGAAAAGCACTTCGAGTTATATGCAGTAGTTTAGAGCAGATTCGTAGTTTGAAGTCGAATAAATCGTCGGCTTCGTCTTGTCGGAACGAATACTCTACCACAAGAACATATGGAACTTTGGAATCGAGAACGAAAAATAAAATCAAAACGGAACGGGAAATAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATCACTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCACCCAAAAAAAA] consensusID : consensus_64#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 528 fasta sequence [TTCAAATATCAAGCTTTTTCATCACCGATTCAGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAGTTCATCTTCGCCTGCTATTGAAAACCTACGTTTAGAATTTAACACGTTAGGCAGTCTGTGTCTATATTTCGAAATAACAGATTTTCCTTCTCTGAAAGATCCCTAAATGTCCAGTTATTGGATATAAATTTGCAGTCAGCTATTAGCTACAATACGCACAACCTTTCTAAAAATCTTCTGTAATAATCACTTTAATAAGTATTTGACAGAAAAAAAGTAAAACAGTGAAAAGTATAAAAAAAAAAATCCGTTCTTCCGGTAAATTCGAGTTATCCATATGCAAAATAGACGAGCCACGAGGCTCGTTGGCGTTTAAAAAATATGAATACATATTAGAAAAAAATGTAGAAAAGTAGTTTGTTTTTCTATTTTCTACTGNTTGCAAAGTTTCGCTTATTTCCTTTTTTTTTTATACATACATACATATAAATAAATATATATATATATCT] [+] EMBL BI515714 [TTCAAATATCAAGCTTTTTCATCACCGATTCAGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAGTTCATCTTCGCCTGCTATTGAAAACCTACGTTTAGAATTTAACACGTTAGGCAGTCTGTGTCTATATTTCGAAATAACAGATTTTCCTTCTCTGAAAGATCCCTAAATGTCCAGTTATTGGATATAAATTTGCAGTCAGCTATTAGCTACAATACGCACAACCTTTCTAAAAATCTTCTGTAATAATCACTTTAATAAGTATTTGACAGAAAAAAAGTAAAACAGTGAAAAGTATAAAAAAAAAAATCCGTTCTTCCGGTAAATTCGAGTTATCCATATGCAAAATAGACGAGCCACGAGGCTCGTTGGCGTTTAAAAAATATGAATACATATTAGAAAAAAATGTAGAAAAGTAGTTTGTTTTTCTATTTTCTACTGNTTGCAAAGTTTCGCTTATTTCCTTTTTTTTTTATACATACATACATATAAATATATATATATATATATCT] [+] EMBL BI504854 [ AAAAATCCGTTCTTCCGGTAAATTCGAGTTATCCATATGCAAAATAGACGAGCCACGAGGCTCGTTGGCGTTTAAAAAATATGAATACATATTAGAAAAAAATGTAGAAAAGTAGTTTGTTTTTCTATTTTCTACTGGTTGCAAAGTTTCGCTTATTTCCTTTTTTTTTTATACATACATACATATAAATAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_64#0 ACGGGAAATAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATC---A 57 consensus_64#1 -------------------GTGAACACCCGAAGACCCACTAACCAGTGAATATACCTCTA 41 consensus_64#2 ------------------------------------------------------------ consensus_64#0 TTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCA 117 consensus_64#1 CTTCTTTTACGTGGTCCACGAGGCTGCTGACAATACGACGTGAA---AATGTAGACGAGA 98 consensus_64#2 ------------------------------------TTCAAATATCAAGCTTTTTCATCA 24 * * * * consensus_64#0 CCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTT 177 consensus_64#1 CGGAT-TCGGTGCGGAGCGCGACAGTTTACCTG--CACCCTGCGGGGT----CGGTGCTT 151 consensus_64#2 CCGAT-TCAGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAA-ATGAAGTTC 82 * * ** * * ** * * * consensus_64#0 AAAA-CACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTG-AGATGGAGGCA 235 consensus_64#1 GA----ACAATCCGTACGCAACCATAATCTGAT-TTGATTA----GAG-AGTTCGA---A 198 consensus_64#2 ATCTTCGCCTGCTATTGAAAACCTACGTTTAGAATTTAACACGTTAGGCAGTCTGTGTCT 142 * * * * * ** * * * ** * consensus_64#0 AGACGTATCTGCGTATGAATTGTCGGC--TGACAAATCCGTGCTCGTCTTGTCTCTCCTC 293 consensus_64#1 ATTTCTTCACACATTTGAAGTATT-----TAAGAAA----AGCACTTCGAGTTATATGCA 249 consensus_64#2 ATATTTCGAAATAACAGATTTTCCTTCTCTGAAAGATCCCTAAATGTCCAGTTATTGGAT 202 * * ** * * * * * ** ** consensus_64#0 GTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGT--AATCTCTTCCGGT 351 consensus_64#1 GTAGTTTAG---AGCAGATTCGTAGTTTGAAGTCGAATAAATCGTC-GGCTTCGTCTTGT 305 consensus_64#2 ATAAATTTGCA-GTCAGCTAT-TAGCTACAATACGCACAACCTTTCTAAAAATCTTCTGT 260 * ** ** * * ** * * ** consensus_64#0 GAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGC 411 consensus_64#1 CGGAAC----GAATACTC--TACCAC-----AAGAACATA-TGGAACTTTGGAGTCGAGA 353 consensus_64#2 AATAAT-----CACTTTAATAAGTATTTGACAGAAAAAAAGTAAAACAGT-GAAAAGTAT 314 ** * * * * * * *** * ** consensus_64#0 CCGAAGTTTAAAAGGTCGAACAGGGAGATATCTTTTATTGGAGCACGATGTT-ACGTGTA 470 consensus_64#1 ACGAAAAATAAAA--TCAAAACGGAACG-----------GGAAAAAAAAGAA-AAAAGGA 399 consensus_64#2 AAAAAAAAAAATCCGTTCTTCCGGTAAATTCGAGTTATCCATATGCAAAATAGACGAGCC 374 ** ** * ** * * * * consensus_64#0 ATGAA-TATGATATT-TCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACG 528 consensus_64#1 ACG---TAAAAAGGC-TCGGAAAAAAAAAAACGGATCACTTTCCTAGCGTCGAGCA---G 452 consensus_64#2 ACGAGGCTCGTTGGCGTTTAAAAAATATGAATACATATTAGAAAAAAATGTAGAAAAGTA 434 * * * * * * ** * * * consensus_64#0 CATCCATTCCACATCCGATTCTGGCCTCGCATCTTATAATAT-ACCATTGATTCTATTAA 587 consensus_64#1 CATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCGAGCTCTTCTC 512 consensus_64#2 GTTTGTTTTTCTATTTTCTACTGNTTGCAAAGTTTCGCTTATTTCCTTT--TTTTTTTAT 492 * * * * * ** * consensus_64#0 ATCATCATTTATTGCGAAAATTTCAAATATCAAGCTTTTTCAT-CACCGATTCAGGGGAA 646 consensus_64#1 TCCATCTTTTTACCT-----TTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAG 567 consensus_64#2 ACATACATACATATAAATAAATATATATATATATCT------------------------ 528 * * * * * consensus_64#0 AGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAG 688 consensus_64#1 ACTCGAGGTAATGTTGATCA-CGTCACCCAAAAAAAA----- 603 consensus_64#2 ------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |