These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 869 fasta sequence [TTTACATTATCATTAATGCAGTGTTTTCCTTGAAAGCTAGTTCCTTTAAAGAAATACTGAAAAATAAGGTACATGTTTTTTTGAGTATCTAATCAGATTTTTAAATGGTGTTGCATGATGCAAGGTTTGCACAATTAGAACACACACGTATTTATATCATAAATATAACAATAAAAAAATATTAGATTAAAATTAAAAATATTGTAAGTATTCGTATATATTCTCTGAACACGTTTGATAATGTTATACATGCTGGAACACAAGAAGCGGCAGGAGACATAGAGATAGATCAGCTGAGACGCCGTTTGGTCGAGACAGAAGCAGCCATGGAAAGAATTGTTGTTCAGATGGGCAACATATCACGTTCAGTTATGCATAGTCCAAATCCACAACAAGAATTCAAGGACAATACCATTGCTCAGGTTCAATATAGTACAGAAGATAAAGTAGAAAACATAGAACATTCACCAACTATTAAAGTCATGGGTATGGAAATGACAGCTAGTTGTGAGAATAAGGGTAGTAGACCTACTACTCCTATAATTCCAATTTCACCAAGTCATATTGAGAGGGAAAAAACACCACCAAAACCAATATATTTAGAAGGTGCACTTCCTCCACAATGTGAATTGCTTGTAACAGATTCAGAAACTCAAGCTCAGAAAGCGGAAGAAGATGTAGAGGCACCTGTTGTACTTTCAGGCAAAATGACTCTCTCTCTCATCAGTCTCGACCAAAATGCAGCTGAAATTGATGAAGAAGATCAAGAAAAAAATGCAAATGATATAAGAATCTTGAATTTAAAAGATACAGAAAAAGTGTTAAATATTAAAAAAAATAATAAAGAGGAAATTAAGAATAAAGATGAA] [+] EMBL BI516172 [TTTACATTATCATTAATGCAGTGTTTTCCTTGAAAGCTAGTTCCTTTAAAGAAATACTGAAAAATAAGGTACATGTTTTTTTGAGTATCTAATCAGATTTTTAAATGGTGTTGCATGATGCAAGGTTTGCACAATTAGAACACACACGTATTTATATCATAAATATAACAATAAAAAAATATTAGATTAAAATTAAAAATATTGTAAGTATTCGTATATATTCTCTGAACACGTTTGATAATGTTATACATGCTGGAACACAAGAAGCGGCAGGAGACATAGAGATAGATCAGCTGAGACGCCGTTTGGTCGAGACAGAAGCAGCCATGGAAAGAATTGTTGTTCAGATGGGCAACATATCACGTTCAGTTATGCATAGTCCAAATCCACAACAAGAATTCAAGGACAATACCATTGCTCAGGTTCAATATAGTACAGAAGATAAAGTAGAAAACATAGAACATTCACCAACTATTAAAGTCATGGGTATGGAAATGACAGCTAGTTGTGAGAATAAGGGTAGTAGACC ] [+] EMBL BI514622 [ GATGGGCAACATATCACGTTCAGTTATGCATAGTCCAAATCCACAACAAGAATTCAAGGACAATACCATTGCTCAGGTTCAATATAGTACAGAAGATAAAGTAGAAAACATAGAACATTCACCAACTATTAAAGTCATGGGTATGGAAATGACAGCTAGTTGTGAGAATAAGGGTAGTAGACCTACTACTCCTATAATTCCAATTTCACCAAGTCATATTGAGAGGGAAAAAACACCACCAAAACCAATATATTTAGAAGGTGCACTTCCTCCACAATGTGAATTGCTTGTAACAGATTCAGAAACTCAAGCTCAGAAAGCGGAAGAAGATGTAGAGGCACCTGTTGTACTTTCAGGCAAAATGACTCTCTCTCTCATCAGTCTCGACCAAAATGCAGCTGAAATTGATGAAGAAGATCAAGAAAAAAATGCAAATGATATAAGAATCTTGAATTTAAAAGATACAGAAAAAGTGTTAAATATTAAAAAAAATAATAAAGAGGAAATTAAGAATAAAGATGAA] consensusID : consensus_691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [TGTTGGAGGGGCGCGTTGCTTGATGCAAGGTTTGCACAATTAGAACACACACGTATTTATATCATAAATATAACAATAAAAAAATATTAGATTAAAATTAAAAATATTGTAAGTATTCGTATATATTCTCTGAACACGTTTGATAATGTTATACATGCTGGAACACAAGAAGCGGCAGGAGACATAGAGATAGATCAGCTGAGACGCCGTTTGGTCGAGACAGAAGCAGCCATGGAAAGAATTGTTGTTCAGATGGGCAACATATCACGTTCAGTTATGCATAGTCCAAATCCACAACAAGAATTCAAGGACAATACCATTGCTCAGGTTCAATATAGTACAGAAGATAAAGTAGAAAACATAGAACATTCACCAACTATTAAAGTCATGGGTATGGAAATGACAGCTAGTTGTGAGAATAAGGGTAGTAGACCTACTACTCCTATAATTCNAATTTCACCAAGTCATATTGAGNGGGAAAAAACACCACCA] [+] EMBL BI513415 [TGTTGGAGGGGCGCGTTGCTTGATGCAAGGTTTGCACAATTAGAACACACACGTATTTATATCATAAATATAACAATAAAAAAATATTAGATTAAAATTAAAAATATTGTAAGTATTCGTATATATTCTCTGAACACGTTTGATAATGTTATACATGCTGGAACACAAGAAGCGGCAGGAGACATAGAGATAGATCAGCTGAGACGCCGTTTGGTCGAGACAGAAGCAGCCATGGAAAGAATTGTTGTTCAGATGGGCAACATATCACGTTCAGTTATGCATAGTCCAAATCCACAACAAGAATTCAAGGACAATACCATTGCTCAGGTTCAATATAGTACAGAAGATAAAGTAGAAAACATAGAACATTCACCAACTATTAAAGTCATGGGTATGGAAATGACAGCTAGTTGTGAGAATAAGGGTAGTAGACCTACTACTCCTATAATTCNAATTTCACCAAGTCATATTGAGNGGGAAAAAACACCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_691#0 TTTACATTATCATTAATGCAGTGTTTTCCTTGAAAGCTAGTTCCTTTAAAGAAATACTGA 60 consensus_691#1 ------------------------------------------------------------ consensus_691#0 AAAATAAGGTACATGTTTTTTTGAGTATCTAATCAGATTTTTAAATGGTGTTGCATGATG 120 consensus_691#1 -----------------------------------TGTTGGAGGGGCGCGTTGCTTGATG 25 ** * ***** ***** consensus_691#0 CAAGGTTTGCACAATTAGAACACACACGTATTTATATCATAAATATAACAATAAAAAAAT 180 consensus_691#1 CAAGGTTTGCACAATTAGAACACACACGTATTTATATCATAAATATAACAATAAAAAAAT 85 ************************************************************ consensus_691#0 ATTAGATTAAAATTAAAAATATTGTAAGTATTCGTATATATTCTCTGAACACGTTTGATA 240 consensus_691#1 ATTAGATTAAAATTAAAAATATTGTAAGTATTCGTATATATTCTCTGAACACGTTTGATA 145 ************************************************************ consensus_691#0 ATGTTATACATGCTGGAACACAAGAAGCGGCAGGAGACATAGAGATAGATCAGCTGAGAC 300 consensus_691#1 ATGTTATACATGCTGGAACACAAGAAGCGGCAGGAGACATAGAGATAGATCAGCTGAGAC 205 ************************************************************ consensus_691#0 GCCGTTTGGTCGAGACAGAAGCAGCCATGGAAAGAATTGTTGTTCAGATGGGCAACATAT 360 consensus_691#1 GCCGTTTGGTCGAGACAGAAGCAGCCATGGAAAGAATTGTTGTTCAGATGGGCAACATAT 265 ************************************************************ consensus_691#0 CACGTTCAGTTATGCATAGTCCAAATCCACAACAAGAATTCAAGGACAATACCATTGCTC 420 consensus_691#1 CACGTTCAGTTATGCATAGTCCAAATCCACAACAAGAATTCAAGGACAATACCATTGCTC 325 ************************************************************ consensus_691#0 AGGTTCAATATAGTACAGAAGATAAAGTAGAAAACATAGAACATTCACCAACTATTAAAG 480 consensus_691#1 AGGTTCAATATAGTACAGAAGATAAAGTAGAAAACATAGAACATTCACCAACTATTAAAG 385 ************************************************************ consensus_691#0 TCATGGGTATGGAAATGACAGCTAGTTGTGAGAATAAGGGTAGTAGACCTACTACTCCTA 540 consensus_691#1 TCATGGGTATGGAAATGACAGCTAGTTGTGAGAATAAGGGTAGTAGACCTACTACTCCTA 445 ************************************************************ consensus_691#0 TAATTCCAATTTCACCAAGTCATATTGAGAGGGAAAAAACACCACCAAAACCAATATATT 600 consensus_691#1 TAATTCNAATTTCACCAAGTCATATTGAGNGGGAAAAAACACCACCA------------- 492 ****** ********************** ***************** consensus_691#0 TAGAAGGTGCACTTCCTCCACAATGTGAATTGCTTGTAACAGATTCAGAAACTCAAGCTC 660 consensus_691#1 ------------------------------------------------------------ consensus_691#0 AGAAAGCGGAAGAAGATGTAGAGGCACCTGTTGTACTTTCAGGCAAAATGACTCTCTCTC 720 consensus_691#1 ------------------------------------------------------------ consensus_691#0 TCATCAGTCTCGACCAAAATGCAGCTGAAATTGATGAAGAAGATCAAGAAAAAAATGCAA 780 consensus_691#1 ------------------------------------------------------------ consensus_691#0 ATGATATAAGAATCTTGAATTTAAAAGATACAGAAAAAGTGTTAAATATTAAAAAAAATA 840 consensus_691#1 ------------------------------------------------------------ consensus_691#0 ATAAAGAGGAAATTAAGAATAAAGATGAA 869 consensus_691#1 ----------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |