These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [TTATTGATATAATAATATTGATGTAACAACGTTAATCTAATGTGTATGAAGATGATTAAAATACCACGTACATTTTAAAAAATAGGAAAATATAAAAGAAGACACCATGGTTTCTGTTAATCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGTAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATCATTTTTATTATCAATGGCAAATCGTGGTAGNGACACAAATGGTTCACAATTTTTTATTCGTGAGGGAAGGGTCTGCACACCACTACTACAACACAATGACCAATG] [+] EMBL BI513616 [TTATTGATATAATAATATTGATGTAACAACGTTAATCTAATGTGTATGAAGATGATTAAAATACCACGTACATTTTAAAAAATAGGAAAATATAAAAGAAGACACCATGGTTTCTGTTAATCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGTAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATCATTTTTATTATCAATGGCAAATCGTGGTAGNGACACAAATGGTTCACAATTTTTTATTCGTGAGGGAAGGGTCTGCACACCACTACTACAACACAATGACCAATG] consensusID : consensus_717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 416 fasta sequence [TCTGTTAATCCCAGAGTATTTTTTGATACAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCAANNCATGGNGGAAAATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATCATTTTTATTATCAATGGCAAATCNNGGTAGAGACACAAATGGTTCACAATTTTTTATGTAAGTATTCATAAAAAATATAAATATATAAACTTTAATGAAATAATATAA] [+] EMBL BI510852 [TCTGTTAATCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATCATTTTTATTATCAATGGCAAATCNNGGTAGAGACACAAATGGTTCACAATTTTTTATGTAAGTATTCATAAAAAATATAAATATATAAACTTTAATGAAATAATATAA] [-] EMBL BI507657 [ tTTTTTTTTGATACAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCACNNCCTTGNATCAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_717#0 TTATTGATATAATAATATTGATGTAACAACGTTAATCTAATGTGTATGAAGATGATTAAA 60 consensus_717#1 ------------------------------------------------------------ consensus_717#0 ATACCACGTACATTTTAAAAAATAGGAAAATATAAAAGAAGACACCATGGTTTCTGTTAA 120 consensus_717#1 ----------------------------------------------------TCTGTTAA 8 ******** consensus_717#0 TCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGA 180 consensus_717#1 TCCCAGAGTATTTTTTGATACAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGA 68 ******************** *************************************** consensus_717#0 ACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGA 240 consensus_717#1 ACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGA 128 ************************************************************ consensus_717#0 AAAAGGACTTGGAAAAACAACTGGTAAACAATTGCATTATAAAGGAATTGTTTTTCATAG 300 consensus_717#1 AAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTTTTTCATAG 188 ************************ *********************************** consensus_717#0 AGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGG 360 consensus_717#1 AGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGG 248 ************************************************************ consensus_717#0 AGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATC 420 consensus_717#1 AGAATCAANNCATGGNGGAAAATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATC 308 ******** **** **** *************************************** consensus_717#0 ATTTTTATTATCAATGGCAAATCGTGGTAGNGACACAAATGGTTCACAATTTTTTATTCG 480 consensus_717#1 ATTTTTATTATCAATGGCAAATCNNGGTAGAGACACAAATGGTTCACAATTTTTTATGTA 368 *********************** ***** ************************** consensus_717#0 TGAGG----GAAGGGTCTGCACACCACTACTACAACACAATGACCAATG 525 consensus_717#1 AGTATTCATAAAAAATATAAATATATAAACTTTAATGAAATAATATAA- 416 * ** * * * * *** ** *** * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |