These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_76#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 810 fasta sequence [TTTTTTTTTTTTTTTTTTGATCGAATCGAATTCGAAGAGGAACATAAACGAAGAACGTGGCGTGAATACGAAAGAAATACCCTGTATCGATCGGGCATATCCCTGTTGTACATATCCGTGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTATAATAATAATAATAATAATGATAAGAATAATAATAATGATTAAACCAAAAAAAAAAAAAAAGGAAAAACTGCATGCATCTGCGTGCGTATATCTGTGGAAAATATGGATACACGGCATAATCGATGNNNNNATCGGATGATTTGATAACAATCGATGCTTTCGAAGTTTAAAAGAAACTGGCTAAATCGATATAAAGTGAATATAAAATACTTGCAACTGAGAGATTAAAGCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAAAGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTTCTTTTGCTTTCGTCTGTTGTAAAAATGCGCAGAAAAGTAAAGTTTGTAGTAAGATTATAAAGGAGAAAAAAATATACATATATATATATATATATATAATTATTAATACATTGACTAGGAAAAAGAAACTAACACGAAAGTCGTGCACGATGAAAGTTAAATTAAGGAATAATAAATGCTTAATTATATTCGTGATCGATAAGAAAATTCAGAGCGACAATTGTTATCGGATCAAACCGTACAAGAATATTTCTCAACAGCTCTGATTACGTGCTGCACTTTTGTACG] [+] EMBL BI514750 [TTTTTTTTTTTTTTTTTTGATCGAATCGAATTCGAAGAGGAACATAAACGAAGAACGTGGCGTGAATACGAAAGAAATATCCTGTATCGATCGGGCATATCCCTGTTGTACATATCCGTGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTATAATAATAATAATAATAATGATAAGAATA ] [+] EMBL BI510943 [ TCGAAGAGGAACATAAACGAAGAACGTGGCGTGAATACGAAAGAAATACCCTGTATCGATCGGGCATATCCCTGTTGTACATATCCGTGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTATAATAATAATAATAATAATGATAAGAATAATAATAATGATTAAACCAAAAAAAAAAAAAAAGGAAAAACTGCATGCATCTGCGTGCGTATATCTGTGGAAAATATGGATACACGGCATAATCGATGNNNNNATCGGATGATTTGATNNCAATCGATGCTTTCGAAGTTTAAAAGAAACTGGCTAAATCGATATAAAGTGAATATAAAATACTTGCAACTGAGAGATTAAAGCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAAAGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTTCTTTTGCTTTCGTCTGTTGTAAAAATGC ] [+] EMBL BI512517 [ ATATCCCTGTTGTACATATCCGTGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTATAATAATAATAATAATAATGATAAGAATAATAATAATGATTAAACCAAAAAAAAAAAAAAAGGAAAAACTGCATGCATCTGCGTGCGTATATCTGTGGAAAATATGGATACACGGCATAATCGATGAGGTGATCGGATGATTTGATAACAATCGATGCTTTCGAAGTTTAAAAGAAACTGGCTAAATCGATATAAAGTGAATATAAAATACTTGCAACTGAGAGATTAAAGCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAAAGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTT ] [+] EMBL BI514835 [ ATTTGATAACAATCGATGCTTTCGAAGTTTAAAAGAAACTGGCTAAATCGATATAAAGTGAATATAAAATACTTGCAACTGAGAGATTAAAGCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAAAGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTTCTTTTGCTTTCGTCTGTTGTAAAAATGCGCAGAAAAGTAAAGTTTGTAGTAAGATTATAAAGGAGAAAAAAATATACATATATATATATATATATATAATTATTAATACATTGACTAGGAAAAAGAAACTAACACGAAAGTCGTGCACGATGAAAGTTAAATTAAGGAATAATAAATGCTTAATTATATTCGTGATCGATAAGAAAATTCAGAGCGACAATTGTTATCGGATCAAACCGTACAAGAATATTTCTCAACAGCTCTGATTACGTGCTGCACTTTTGTACG] consensusID : consensus_76#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence [GCTCTGATTACGTGCTGCACTTTTGTACGGAATGCGATTCGAAGCCAAAGAAAATTTAAGGAGAAAAATAAGAGACAGAGATAAGAATTAATTAAGAGAAAGAATTTAAAAAAGTAAAAATAAAAAAGTTAATAGGAAGAAAAAGAAACGGTTTACAATGATGTTTCTGCCGCGTGACCAGGCTGGTCCGGCCACGGCTGTTAATCTCTAATATATATATATATATACATTATATATATATATTTCATACGAGATGTCTTTTCAAGTGTGAATTTTATGATATATATATGTATATATATATATATATATATATATACATATATTTGCATATATGTATTAATTAACATACATACGTATATACACATTATAGAATGTGGGTCGTTTTCACTGCATTCTCATCGACGGCTTTTTGGTGCATTGTTAGTAAATTAGGTCATTGCGACTGCTGATATTGATCGCGTGTACAAGACATTAAATAATTAATTGATTTGTTAAATCTTCGCCGAACAGTAGTAACGTAACCAGCTGGAAGAAGTGACTNCGAAATAGAATTAAATCGTTCCTGCTAAAGATACCCTTTTATTTATTACAATAATACCTTTCTTTCGATTCGGATTG] [+] EMBL BI513095 [GCTCTGATTACGTGCTGCACTTTTGTACGGAATGCGATTCGAAGCCAAAGAAAATTTAAGGAGAAAAATAAGAGACAGAGATAAGAATTAATTAAGAGAAAGAATTTAAAAAAGTAAAAATAAAAAAGTTAATAGGAAGAAAAAGAAACGGTTTACAATGATGTTTCTGCCGCGTGACCAGGCTGGTCCGGCCACGGCTGTTAATCTCTAATATATATATATATATACATTATATATATATATTTCATACGAGATGTCTTTTCAAGTGTGAATTTTATGATATATATATG TATATATATATATATATACATATATTTGCATATATGTATTAATTAACATACATACGTATATACACATTATAGAATGTGGGTCGTTTTCACTGCATTCTCATCGACGGCTTTTTGGTGCATTGTTAGTAAATTAGGTCATTGCGACTGCTGATATTGATCGCGTGTACAAGACATTAAATAATTAATTGATTTGTTAAATCTTCGCCGAACAGTAGTAACGTAACCAGCTGGAAGAAGTGACTTCGAAATAGAATTAAATCGTTCCTGCTAAAGATACCCTTTTATTTATTACAATAA ] [+] EMBL BI509174 [ CCGGCCACGGCTGTTAATCTCTAATATATATATATATATACATTATATATATATATTTCATACGAGATGTCTTTTCAAGTGTGAATTTTATGATATATATATGTATATATATATATATATATATATATATATATATTTGCATATATGTATTAATTAACATACATACGTATATACACATTATAGAATGTGGGTCGTTTTCACTGCATTCTCATCGACGGCTTTTTGGTGCATTGTTAGTAAATTAGGTCATTGCGACTGCTGATATTGATCGCGTGTACAAGACATTAAATAATTAATTGATTTGTTAAATCTTCGCCGAACAGTAGTAACGTAACCAGCTGGAAGAAGTGACTNCGAAATAGAATTAAATCGTTCCTGCTAAAGATACCCTTTTATTTATTACAATAATACCTTTCTTTCGATTCGGATTG] consensusID : consensus_76#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 342 fasta sequence [CATGTATTCTTTACGTTTATTCAATGAAAGCATAATTCGTCATCGTTTTGGATTTGCTCAATTTGGCACATAATTGCAATACGATATTAAAATACATATAAACGAAGATTGTACATATTAACAGTTTAAAATGTATCATATACATATTAACAGCGAGATACACGATGAAATGAAATATGCGAAATGAATGATCGAGCAACGATCATAAATTACGATCGTTACTTTAGAAAAAAGAATAATATAGAATTGGATCGCAATTATCCACGGGGTCGATCAATTATAACACGATATCGATGAACTGGATCAACGCTCAATCCGAATCGAAAGAAAGGTATTATTGTA] [+] EMBL BI514500 [CATGTATTCTTTACGTTTATTCAATGAAAGCATAATTCGTCATCGTTTTGAATTTGCTCAATTTGGCACATAATTGCAATACGATATTAAAATACATATAAACGAAGATTGTACATATTAACAGTTTAAAATGTATCATATACATATTAACAGCGAGATACACGATGAAATGAAATATGCGAAATGAATTATTAAGCAACG CATAAATTATGATCGTTACTTTAAAAAAAAGAATAATATACAATTGGATCGCAATTATCCACGGGGTCGATCAATTATAACACGATATCGATGAACTGGATCAACGCTCAATCCGAATCGAAAGAAAGGTATTATTGTA] [-] EMBL AB072428 [ TGTATTCTTTACGTTTATTCAATGAAAGCATAATTCGTCATCGTTTTGGATTTGCTCAATTTGGCACATAATTGCAATACGATATTAAAATATATATAAACGAAGATTGTACATATTAACAGTTTAAAATGTATCATATACATATTAACAGCGAGATACACGATGAAATGAAATATGCGAAATAAATGATCGAGTAACGATCATAAATTACGATCGTTACTTT GAAAAAAGAATAATATAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_76#0 TTTTTTTTTTTTTTTTTTGATCGAATCGAATTCGAAGAGGAACATAAACGAAGAACGTGG 60 consensus_76#2 ------------------------------------------CATGTATTCTTTACGTTT 18 consensus_76#1 ---------------------------------------------GCTCTGATTACGTGC 15 **** consensus_76#0 CGTGAATACGAAAGAAATACCCTGTATCGATCGGGCATATCCCTGTT--GTACATATCCG 118 consensus_76#2 ATTCAAT--GAAAGCATAATTCGTCATCGTTTTGGATTTGCTCAATTTGGCACATAATTG 76 consensus_76#1 TGCACTTTTGTACGGAATGCGATTCGAAGCCAAAGAAAATTTAA-----GGAGAAAAATA 70 * * * * * * * * * * * consensus_76#0 TGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTA 178 consensus_76#2 CAATACGATATTAAAATACATATAAAC-GAAGATTGTACATATTAACAGTTTAAAATGTA 135 consensus_76#1 AGAGACAGAGATAAGAATTAATTAAGAGAAAGAATTTAAAAAAGTAAAAATAAAAAAGT- 129 * ** * ** ** * * * * ** consensus_76#0 TAATAATAATAATAATAATGATAAGAATAATAATAATGATTA-AACCAAAAAAAAAAAAA 237 consensus_76#2 TCATATACATATTAACAGCGAGATACACGATGA-AATGAAAT-ATGCGAAATGAATGATC 193 consensus_76#1 TAATAGGAAGAAAAAGAA-ACGGTTTACAATGATGTTTCTGCCGCGTGACCAGGCTGGTC 188 * *** * * ** * * ** * * * consensus_76#0 AAGGAAAAACTGCATGCATCTGCGTGCGTATATCTGTGGAAAATATGGATACACGGCATA 297 consensus_76#2 GAGCAACGATCATA---AATTACGATCGTTACTTTAGAAAAAAGAATAATATAGAATTGG 250 consensus_76#1 CGGCCACGGCTGTTAATCTCTA-ATATATATATATATATACATTATATATATATATTTCA 247 * * * * * * * * * *** * consensus_76#0 ATCG-ATG---NNNNNATCGGATGATTTGATAACAAT-CGATGCTTTCGAAG-TTTAAAA 351 consensus_76#2 ATCGCAAT---TATCCACGGGGTCGATCAATTATAACACGATATCGATGAAC-TGGATCA 306 consensus_76#1 TACGAGATGTCTTTTCAAGTGTGAATTTTATGATATATATATGTATATATATATATATAT 307 ** * * * ** * * ** * * * consensus_76#0 GAAACTG-G-CTAAATCGATATAAAGTGAATATAAAATACTTGCAACTG-AGAGATTAAA 408 consensus_76#2 ACGCTCA-ATCCGAATCGAAAGAAAGGTATTATTGTA----------------------- 342 consensus_76#1 ATATATATACATATATTTGCATATATGTATTAATTAACATACATACGTATATACACATTA 367 ** * * * * ** * consensus_76#0 GCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAA 468 consensus_76#2 ------------------------------------------------------------ consensus_76#1 TAGAATGTGGGTCGTTTTCACTGCATTCTCATCGACGGCTTTTTGGTGCATTGTTAGTAA 427 consensus_76#0 AGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTTCTTTTG 528 consensus_76#2 ------------------------------------------------------------ consensus_76#1 ATTAGGTCATTGCGACTGCTGATATTGATCGCGTGTACAAGACATTAAATAATTAATTGA 487 consensus_76#0 CTTTCGTCTGTTGTAAAAATGCGCAGAAAAGTAAAGTTTGTAGTAAGATTATAAAGGAGA 588 consensus_76#2 ------------------------------------------------------------ consensus_76#1 TTTGTTAAATCTTCGCCGAACAGTAGTAACGTAACCAGCTGGAAGAAGTGACTNCGAAAT 547 consensus_76#0 AAAAAATATACATATATATATATATATATATAATTATTAATACATTGACTAGGAAAAAGA 648 consensus_76#2 ------------------------------------------------------------ consensus_76#1 AGAATTAAATCGTTCCTGCTAAAGATACCCTTTTATTTATTACAATAATACCTTTCTTTC 607 consensus_76#0 AACTAACACGAAAGTCGTGCACGATGAAAGTTAAATTAAGGAATAATAAATGCTTAATTA 708 consensus_76#2 ------------------------------------------------------------ consensus_76#1 GATTCGGATTG------------------------------------------------- 618 consensus_76#0 TATTCGTGATCGATAAGAAAATTCAGAGCGACAATTGTTATCGGATCAAACCGTACAAGA 768 consensus_76#2 ------------------------------------------------------------ consensus_76#1 ------------------------------------------------------------ consensus_76#0 ATATTTCTCAACAGCTCTGATTACGTGCTGCACTTTTGTACG 810 consensus_76#2 ------------------------------------------ consensus_76#1 ------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |