These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1003 fasta sequence [GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCATTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAATTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTCGACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATTTTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTCACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAATTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAAAACATAACTGTATCATCACAATTATAATTAAAAAAAAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAATCAA-GCAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGCACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATTCCAAGAAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTTCACTCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCTCCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAACGATCGGATGTTTGCAACTCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCATGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC] [+] EMBL BI503997 [GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCATTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAATTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTCGACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATTTTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTCACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAATTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAAAACATAACTGTATCATCACAATTATAATTAAAAAAAAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAATCAATGCAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATA ] [-] EMBL BI506444 [ AAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAAT CAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGCACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATTCCAAGAAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTTCACTCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCTCCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAACGATCGGATGTTTGCAACTCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCATGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC] consensusID : consensus_782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGAAAGGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATATGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGACTTGTCGAGCATAGTTTTGCACATTCTCGGTCAGAAATATCCTTTAGTCGCGGAATAATCTTGCCGCGGCGAACATCCCGCCACGTATCTCCATGAAAAGACCCTTTCACAGTGAAATAATAATCGCCCACCGACCAAAGCTCCCTCTTGCGACGATTTTTCGACAAATTGAAAAGTTTCACGCAGCGTCGTAGCGCGTGATGGGCAATTCACTTTCGCAATGCATAATTGATTTCTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTCTCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCATGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC] [-] EMBL BI505305 [ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGAAAGGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATATGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGACTTGTCGAGCATAGTTTTGCACATTCTCGGTCAGAAATATCCTTTAGTCGCGGAATAATCTTGCCGCGGCGAACATCCCGCCACGTATCTCCATGAAAAGACCCTTTCACAGTGAAATAATAATCGCCCACCGACCAAAGCTCCCTCTTGCGACGATTTTTCGACAAATTGAAAAGTTTCACGCAGCGTCGTAGCGCGTGATGGGCAATTCACTTTCGCAATGCATAATTGATTTCTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTCTCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCATGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_782#0 GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCA 60 consensus_782#1 ------------------------------------------------------------ consensus_782#0 TTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAA 120 consensus_782#1 ------------------------------------------------------------ consensus_782#0 TTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTC 180 consensus_782#1 ------------------------------------------------------------ consensus_782#0 GACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATT 240 consensus_782#1 ------------------------------------------------------------ consensus_782#0 TTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTC 300 consensus_782#1 ------------------------------------------------------------ consensus_782#0 ACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAA 360 consensus_782#1 ------------------------------------------------------------ consensus_782#0 TTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAA 420 consensus_782#1 ---ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGA--AA 55 * * **** ** *** * * ** * * ** * ** * ** consensus_782#0 AACATAACTGTATCATCACAATTATA-ATTAAAAAAAAAAAATCGATCTTAATTTAAAAC 479 consensus_782#1 GGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATA 115 ** * * * *** * *** * * **** * * * ** * * consensus_782#0 CAATCCACTGATCACAATCAAGCAATGCAATGCAACGCCATCGATTATTACGAATCGAAT 539 consensus_782#1 TGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGAC-TTGTCGAGCATAGTTTTG-- 172 * * ** * *** * *** * ** * * * * * * * consensus_782#0 TAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGC 599 consensus_782#1 CACATTCTCGGTCAGAAATATCCTTTA--GTCGCGG---AATAATCTTGCCGCGGCGAAC 227 * ** ********* *** ** * ** *** * ** ** ** * consensus_782#0 ACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATT 659 consensus_782#1 ATCCCGCCACGTATCTCCATGAAAAGACC-CTTTCACAGTGAAATA---ATAATCGCCCA 283 * *** * ** * ** ** *** * **** * *** * consensus_782#0 CCAAG-AAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTT 718 consensus_782#1 CCGACCAAAGCTCCCTCTTGCGA--CGATTTTTCGACAAATTG----AAAAGTTTCACGC 337 ** * **** * * * ** *** * * * * ** ***** * consensus_782#0 CAC-TCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCT 777 consensus_782#1 AGCGTCGTAGCGCGTGA-TGGGCAATTCACTTTCGCAAT---GCATAATTGATTT----- 388 * **** ** * ** * * * * ** *** *** ** * * consensus_782#0 CCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAA-C 836 consensus_782#1 -----CTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTC 443 ** * * ** ** ** ** * * ** * * ** * consensus_782#0 GATCGGATGTTTGCAAC-TCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCA 895 consensus_782#1 TCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCA 503 ** * * * ** * ********************************** ******* consensus_782#0 TGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGG 955 consensus_782#1 TGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGG 563 ****** ***************************************************** consensus_782#0 TGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC 1003 consensus_782#1 TGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC 611 ************************************************ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |