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Apis mellifera
cluster # 782 cluster # 782       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_782#0 length = 1003 sequences # 2  
consensus_782#1 length = 611 sequences # 1  

consensusID : consensus_782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1003
fasta sequence
                              [GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCATTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAATTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTCGACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATTTTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTCACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAATTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAAAACATAACTGTATCATCACAATTATAATTAAAAAAAAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAATCAA-GCAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGCACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATTCCAAGAAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTTCACTCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCTCCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAACGATCGGATGTTTGCAACTCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCATGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC]

[+] EMBL BI503997             [GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCATTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAATTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTCGACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATTTTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTCACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAATTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAAAACATAACTGTATCATCACAATTATAATTAAAAAAAAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAATCAATGCAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATA                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL BI506444             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAAT     CAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGCACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATTCCAAGAAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTTCACTCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCTCCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAACGATCGGATGTTTGCAACTCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCATGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC]


>consensus_782#0 GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCA TTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAA TTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTC GACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATT TTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTC ACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAA TTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAA AACATAACTGTATCATCACAATTATAATTAAAAAAAAAAAATCGATCTTAATTTAAAACC AATCCACTGATCACAATCAAGCAATGCAATGCAACGCCATCGATTATTACGAATCGAATT AAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGCA CAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATTC CAAGAAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTTCA CTCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCTCCT CTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAACGATC GGATGTTTGCAACTCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCATGACG GCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGA TACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC



consensusID : consensus_782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence
                              [ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGAAAGGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATATGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGACTTGTCGAGCATAGTTTTGCACATTCTCGGTCAGAAATATCCTTTAGTCGCGGAATAATCTTGCCGCGGCGAACATCCCGCCACGTATCTCCATGAAAAGACCCTTTCACAGTGAAATAATAATCGCCCACCGACCAAAGCTCCCTCTTGCGACGATTTTTCGACAAATTGAAAAGTTTCACGCAGCGTCGTAGCGCGTGATGGGCAATTCACTTTCGCAATGCATAATTGATTTCTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTCTCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCATGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC]

[-] EMBL BI505305             [ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGAAAGGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATATGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGACTTGTCGAGCATAGTTTTGCACATTCTCGGTCAGAAATATCCTTTAGTCGCGGAATAATCTTGCCGCGGCGAACATCCCGCCACGTATCTCCATGAAAAGACCCTTTCACAGTGAAATAATAATCGCCCACCGACCAAAGCTCCCTCTTGCGACGATTTTTCGACAAATTGAAAAGTTTCACGCAGCGTCGTAGCGCGTGATGGGCAATTCACTTTCGCAATGCATAATTGATTTCTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTCTCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCATGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC]


>consensus_782#1 ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGAAAGGCAA GAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATATGTTT CTTCGAATAACATCTCTCCCTGCGCAGAAATGACTTGTCGAGCATAGTTTTGCACATTCT CGGTCAGAAATATCCTTTAGTCGCGGAATAATCTTGCCGCGGCGAACATCCCGCCACGTA TCTCCATGAAAAGACCCTTTCACAGTGAAATAATAATCGCCCACCGACCAAAGCTCCCTC TTGCGACGATTTTTCGACAAATTGAAAAGTTTCACGCAGCGTCGTAGCGCGTGATGGGCA ATTCACTTTCGCAATGCATAATTGATTTCTGCGAAGGATACCAGAAAGAAAGTAATGATC GATCAATTATTTTTAACATTCTCTCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACT CTTATCCAACCGTAGCCGCGTCATGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAA GCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAAT TATGGAATGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_782#0      GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCA 60
consensus_782#1      ------------------------------------------------------------
                                                                                 

consensus_782#0      TTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAA 120
consensus_782#1      ------------------------------------------------------------
                                                                                 

consensus_782#0      TTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTC 180
consensus_782#1      ------------------------------------------------------------
                                                                                 

consensus_782#0      GACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATT 240
consensus_782#1      ------------------------------------------------------------
                                                                                 

consensus_782#0      TTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTC 300
consensus_782#1      ------------------------------------------------------------
                                                                                 

consensus_782#0      ACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAA 360
consensus_782#1      ------------------------------------------------------------
                                                                                 

consensus_782#0      TTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAA 420
consensus_782#1      ---ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGA--AA 55
                           *   *  ****  **  ***  *   * ** *    * ** *   **  *  **

consensus_782#0      AACATAACTGTATCATCACAATTATA-ATTAAAAAAAAAAAATCGATCTTAATTTAAAAC 479
consensus_782#1      GGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATA 115
                       **  *   * *   *** *  ***     * * **** * *   * **    *  *  

consensus_782#0      CAATCCACTGATCACAATCAAGCAATGCAATGCAACGCCATCGATTATTACGAATCGAAT 539
consensus_782#1      TGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGAC-TTGTCGAGCATAGTTTTG-- 172
                        * *   **  *  ***   *  ***   * ** * * * *   *  *    *     

consensus_782#0      TAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGC 599
consensus_782#1      CACATTCTCGGTCAGAAATATCCTTTA--GTCGCGG---AATAATCTTGCCGCGGCGAAC 227
                      * ** *********   ***  ** *  ** ***    *   **  **       ** *

consensus_782#0      ACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATT 659
consensus_782#1      ATCCCGCCACGTATCTCCATGAAAAGACC-CTTTCACAGTGAAATA---ATAATCGCCCA 283
                     *      ***  *  ** * **    **   ***  * **** *      *** *     

consensus_782#0      CCAAG-AAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTT 718
consensus_782#1      CCGACCAAAGCTCCCTCTTGCGA--CGATTTTTCGACAAATTG----AAAAGTTTCACGC 337
                     ** *  ****  *  * *  **   ***      * *  *  *    ** ***** *   

consensus_782#0      CAC-TCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCT 777
consensus_782#1      AGCGTCGTAGCGCGTGA-TGGGCAATTCACTTTCGCAAT---GCATAATTGATTT----- 388
                       * **** ** *  ** *  *    * *    ** ***   ***   **  * *     

consensus_782#0      CCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAA-C 836
consensus_782#1      -----CTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTC 443
                          ** *    *   **     **  ** ** *    *  **  * *   **     *

consensus_782#0      GATCGGATGTTTGCAAC-TCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCA 895
consensus_782#1      TCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCA 503
                       **   * * * ** * ********************************** *******

consensus_782#0      TGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGG 955
consensus_782#1      TGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGG 563
                     ****** *****************************************************

consensus_782#0      TGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC 1003
consensus_782#1      TGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC 611
                     ************************************************




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)