These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_80#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1276 fasta sequence [AATATATGATTTTTGGGAAATATCTTTTTTTAAGTTTTGCAGCTAACATTATAATACATTATATAAACTAAATAATGAAATTTTCACTGAATCAACGAAAAAAATTAAAAATAAAAAACATATTAACATTACATACTAAGATAGCCATGAGCTTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTTTCAGTTGCATTTCTCATAAAATGCAATGTCATACTACCATTAGTTATATTTTTAGCAGACCATTCTAATGTCAAATTTTGTTCCAGTTTTCCACAATATCCACTTGCTTTTGTAGTAACATTATCTGTTGGTATATCGAATGTTATAAAAGATGTCTTATTATTAATGTTGACATAAGAGATATTAAACATTACAGACATCTGTATTACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAAGCAATAAAAACTTCGACATCATTAGAAGTTTTGAATTGCTAAAAATAAGTAAAATTCACTGAAAATTCAAACGTTTATAACTATTAAACAAATTGAACACTAATATAAGTGGAC] [+] EMBL BI515384 [AATATATGATTTTTGGGAAATATCTTTTTTTAAGTTTTGCAGCTAACATTATAATACATTATATAAACTAAATAATGAAATTTTCACTGAATCAACGAAAAAAATTAAAAATAAAAAACATATTAACATTACATACTAAGATAGCCATGAGCTTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCA ] [+] EMBL BI515426 [AATATATGATTTTTGGGAAATATCTTTTTTTAAGTTTTGCAGCTAACATTATAATACATTATATAAACTAAATAATGAAATTTTCACTGAATCAACGAAAAAAATTAAAAATAAAAAACATATTAACATTACATACTAAGATAGCCATGAGCTTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCAT ] [-] EMBL BI515889 [ TTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTTTCAGTTGCATTTCTCATAAAATGCAATGTCATACTACCATTAGTTATATTTTTAGCAGACCATTCTAATG ] [-] EMBL BI516309 [ ACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTTTCAGTTGCATTTCTCATAAAATGCAATGTCATACTACCATTAGTTATATTTTTAGCAGACCATTCTAATGTCAAATTTTGTTCCAGTTTTCCACAATATCCACTTGCTTTTGTAGTAACATTATCTGTTGGTATATCGAATGTTATAAAAGATGTCTTATTATTAATGTTGACATAAGAGATATTAAACATTACAGACATCTGTATTACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGTTTGAAA ] [-] EMBL BI511187 [ ATTACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAA ] [-] EMBL BI511981 [ ACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAAGCAATAAAAACTTCGACATCATTAGAAGTTTTGAATTGCTAAAAATAAGTAAAATTCACTGAAAATTCAAACGTTTATAACTATTAAACAAATT ] [-] EMBL BI514426 [ TGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGNNAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTCGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTNTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAAGCAATAAAAACTTCGACATCATTAGAAGTTTTGAATTGCTAAAAATAAGTAAAATTCACTGAAAATTCAAACGTTTATAACTATTAAACAAATTGAACACTAATATAAGTGGAC] consensusID : consensus_80#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [GACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTGTAAAATAATAATAAATAATTATTATTAATAAATATTATTGATTTAATTAAATTTTTATATTTTTATTACCTATAAATTACCTATAAATTAAAAATTAGATAAAATTTAAAATTAATGAGCTACAATACAATAGTAATATTATTTACTTTTTTATATGAATTAAAAAAGTATATTTAAATGTATAGTATACAAATATAAAAATTAATTTTTTAAATACATACAATTATATTGAATATTGAACTCATTACCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTT] [-] EMBL BI504871 [GACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTGTAAAATAATAATAAATAATTATTATTAATAAATATTATTGATTTAATTAAATTTTTATATTTTTATTACCTATAAATTACCTATAAATTAAAAATTAGATAAAATTTAAAATTAATGAGCTACAATACAATAGTAATATTATTTACTTTTTTATATGAATTAAAAAAGTATATTTAAATGTATAGTATACAAATATAAAAATTAATTTTTTAAATACATACAATTATATTGAATATTGAACTCATTACCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_80#0 ------------------------------------------------------------ consensus_80#1 GACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGC 60 consensus_80#0 ----------------AATATATGATTTTTGGGAAAT---ATCTTT---TTTTAAGTTTT 38 consensus_80#1 CTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTGTAAAATAAT 120 * * ** * * * ** ****** * * ** * * consensus_80#0 G-----CAGCTAACATTATAATACATTATATA---AACTAAATAATGAAATTTTCACTGA 90 consensus_80#1 AATAAATAATTATTATTAATAAATATTATTGATTTAATTAAATTTTTATATTTTTATTAC 180 * ** **** * * ***** * ** ***** * * ***** * * consensus_80#0 --ATCAACGAA--AAAAATTAAAAATAAAAAACATATTAACATTA-CATACTAAGATAGC 145 consensus_80#1 CTATAAATTACCTATAAATTAAAAATTAGATAAAATTTAAAATTAATGAGCTACAATA-C 239 ** ** * * *********** * * * * **** **** *** *** * consensus_80#0 CATGAGCTTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATC 205 consensus_80#1 AATAGTAATATTATTTACTTTTTTATATGAATTAAAAAAGTA-TATTTAAATGTATAGTA 298 ** * * * ** ** ** ** * * ** * *** ** * consensus_80#0 CTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTT 265 consensus_80#1 -TACAAATATAAAAATTAATTTTTTAAATACATACAATTATAT-TGAATATTGAACTCAT 356 * * *** * * ** * * * *** * * * * ** * * * ** * consensus_80#0 TGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATA 325 consensus_80#1 TACCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATA 416 * ********************************************************* consensus_80#0 CAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTT 385 consensus_80#1 CAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTT 476 ************************************************************ consensus_80#0 TTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAG 445 consensus_80#1 TTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAG 536 ************************************************************ consensus_80#0 ATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCA 505 consensus_80#1 ATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCA 596 ************************************************************ consensus_80#0 AATGGTGAAGAGAATAATCATTTTCAGTTGCATTTCTCATAAAATGCAATGTCATACTAC 565 consensus_80#1 AATGGTGAAGAGAATAATCATTT------------------------------------- 619 *********************** consensus_80#0 CATTAGTTATATTTTTAGCAGACCATTCTAATGTCAAATTTTGTTCCAGTTTTCCACAAT 625 consensus_80#1 ------------------------------------------------------------ consensus_80#0 ATCCACTTGCTTTTGTAGTAACATTATCTGTTGGTATATCGAATGTTATAAAAGATGTCT 685 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TATTATTAATGTTGACATAAGAGATATTAAACATTACAGACATCTGTATTACAATACAAA 745 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAAT 805 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCAT 865 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAA 925 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGT 985 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTA 1045 consensus_80#1 ------------------------------------------------------------ consensus_80#0 AATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTT 1105 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAAGCA 1165 consensus_80#1 ------------------------------------------------------------ consensus_80#0 ATAAAAACTTCGACATCATTAGAAGTTTTGAATTGCTAAAAATAAGTAAAATTCACTGAA 1225 consensus_80#1 ------------------------------------------------------------ consensus_80#0 AATTCAAACGTTTATAACTATTAAACAAATTGAACACTAATATAAGTGGAC 1276 consensus_80#1 --------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |