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Apis mellifera
cluster # 80 cluster # 80       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_80#0 length = 1276 sequences # 7  
consensus_80#1 length = 619 sequences # 1  

consensusID : consensus_80#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1276
fasta sequence
                              [AATATATGATTTTTGGGAAATATCTTTTTTTAAGTTTTGCAGCTAACATTATAATACATTATATAAACTAAATAATGAAATTTTCACTGAATCAACGAAAAAAATTAAAAATAAAAAACATATTAACATTACATACTAAGATAGCCATGAGCTTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTTTCAGTTGCATTTCTCATAAAATGCAATGTCATACTACCATTAGTTATATTTTTAGCAGACCATTCTAATGTCAAATTTTGTTCCAGTTTTCCACAATATCCACTTGCTTTTGTAGTAACATTATCTGTTGGTATATCGAATGTTATAAAAGATGTCTTATTATTAATGTTGACATAAGAGATATTAAACATTACAGACATCTGTATTACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAAGCAATAAAAACTTCGACATCATTAGAAGTTTTGAATTGCTAAAAATAAGTAAAATTCACTGAAAATTCAAACGTTTATAACTATTAAACAAATTGAACACTAATATAAGTGGAC]

[+] EMBL BI515384             [AATATATGATTTTTGGGAAATATCTTTTTTTAAGTTTTGCAGCTAACATTATAATACATTATATAAACTAAATAATGAAATTTTCACTGAATCAACGAAAAAAATTAAAAATAAAAAACATATTAACATTACATACTAAGATAGCCATGAGCTTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI515426             [AATATATGATTTTTGGGAAATATCTTTTTTTAAGTTTTGCAGCTAACATTATAATACATTATATAAACTAAATAATGAAATTTTCACTGAATCAACGAAAAAAATTAAAAATAAAAAACATATTAACATTACATACTAAGATAGCCATGAGCTTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BI515889             [                                                                                                                                                        TTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTTTCAGTTGCATTTCTCATAAAATGCAATGTCATACTACCATTAGTTATATTTTTAGCAGACCATTCTAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BI516309             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTTTCAGTTGCATTTCTCATAAAATGCAATGTCATACTACCATTAGTTATATTTTTAGCAGACCATTCTAATGTCAAATTTTGTTCCAGTTTTCCACAATATCCACTTGCTTTTGTAGTAACATTATCTGTTGGTATATCGAATGTTATAAAAGATGTCTTATTATTAATGTTGACATAAGAGATATTAAACATTACAGACATCTGTATTACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGTTTGAAA                                                                                                                                                                                                                                                                                             ]
[-] EMBL BI511187             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAA                                                                                                                  ]
[-] EMBL BI511981             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAAGCAATAAAAACTTCGACATCATTAGAAGTTTTGAATTGCTAAAAATAAGTAAAATTCACTGAAAATTCAAACGTTTATAACTATTAAACAAATT                    ]
[-] EMBL BI514426             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGNNAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCATTCGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTNTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAAGCAATAAAAACTTCGACATCATTAGAAGTTTTGAATTGCTAAAAATAAGTAAAATTCACTGAAAATTCAAACGTTTATAACTATTAAACAAATTGAACACTAATATAAGTGGAC]


>consensus_80#0 AATATATGATTTTTGGGAAATATCTTTTTTTAAGTTTTGCAGCTAACATTATAATACATT ATATAAACTAAATAATGAAATTTTCACTGAATCAACGAAAAAAATTAAAAATAAAAAACA TATTAACATTACATACTAAGATAGCCATGAGCTTGATTTCGACGACGACCAATCAAGTAC GCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACG TCTGGTGTATCAAAAGCGCAATCTTTGGCTAAACCAAACATAGTAGAATTATCAACTTTG AATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTC TGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCA AAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAA TCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTTTCAGTTGCATTT CTCATAAAATGCAATGTCATACTACCATTAGTTATATTTTTAGCAGACCATTCTAATGTC AAATTTTGTTCCAGTTTTCCACAATATCCACTTGCTTTTGTAGTAACATTATCTGTTGGT ATATCGAATGTTATAAAAGATGTCTTATTATTAATGTTGACATAAGAGATATTAAACATT ACAGACATCTGTATTACAATACAAATTTGATCTGTTCCATTAACAACTGTCCATTTACCA GTTGTGTAAGAAGACAAGGTAGAATTTATTGGAGCATGTATAACTATTGGATTAGTTATA TCCGAAATTTTTTTAGATGTTTCATTTGTAGAAATTGAAATAGCTGTCATATCTAATGGC ATGACAATAGAATGATTGGGAATAATTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCT TGTTGCTTTATTTTATTCTCTGTGTTTGAAATAATTCCTAAATCTGTCATGGAAATATTC TTATTTGATAGAATATTTGCTTTTAAATATTCGGAATCATTTTGTAAAGATGTCCTGGGA GAAGTGAGAAGAGTATCATTCTTTTTAGATAAAACATTTTCCTGGTCTTCACCTAGAACG TGGACAGCAGTAAAGCAAAGAAGCAATAAAAACTTCGACATCATTAGAAGTTTTGAATTG CTAAAAATAAGTAAAATTCACTGAAAATTCAAACGTTTATAACTATTAAACAAATTGAAC ACTAATATAAGTGGAC



consensusID : consensus_80#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence
                              [GACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTGTAAAATAATAATAAATAATTATTATTAATAAATATTATTGATTTAATTAAATTTTTATATTTTTATTACCTATAAATTACCTATAAATTAAAAATTAGATAAAATTTAAAATTAATGAGCTACAATACAATAGTAATATTATTTACTTTTTTATATGAATTAAAAAAGTATATTTAAATGTATAGTATACAAATATAAAAATTAATTTTTTAAATACATACAATTATATTGAATATTGAACTCATTACCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTT]

[-] EMBL BI504871             [GACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTGTAAAATAATAATAAATAATTATTATTAATAAATATTATTGATTTAATTAAATTTTTATATTTTTATTACCTATAAATTACCTATAAATTAAAAATTAGATAAAATTTAAAATTAATGAGCTACAATACAATAGTAATATTATTTACTTTTTTATATGAATTAAAAAAGTATATTTAAATGTATAGTATACAAATATAAAAATTAATTTTTTAAATACATACAATTATATTGAATATTGAACTCATTACCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATGGTGAAGAGAATAATCATTT]


>consensus_80#1 GACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGC CTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTGTAAAATAAT AATAAATAATTATTATTAATAAATATTATTGATTTAATTAAATTTTTATATTTTTATTAC CTATAAATTACCTATAAATTAAAAATTAGATAAAATTTAAAATTAATGAGCTACAATACA ATAGTAATATTATTTACTTTTTTATATGAATTAAAAAAGTATATTTAAATGTATAGTATA CAAATATAAAAATTAATTTTTTAAATACATACAATTATATTGAATATTGAACTCATTACC TAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATACAAT TAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTTTTAA ACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAGATAC TGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCAAATG GTGAAGAGAATAATCATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_80#0      ------------------------------------------------------------
consensus_80#1      GACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATCCTGCCAATGCACAGC 60
                                                                                

consensus_80#0      ----------------AATATATGATTTTTGGGAAAT---ATCTTT---TTTTAAGTTTT 38
consensus_80#1      CTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTTTGGCTGTAAAATAAT 120
                                     *  * ** * * *   **     ******   * * ** *  *

consensus_80#0      G-----CAGCTAACATTATAATACATTATATA---AACTAAATAATGAAATTTTCACTGA 90
consensus_80#1      AATAAATAATTATTATTAATAAATATTATTGATTTAATTAAATTTTTATATTTTTATTAC 180
                           *  **  ****  * * *****  *   ** *****  * * ***** * *  

consensus_80#0      --ATCAACGAA--AAAAATTAAAAATAAAAAACATATTAACATTA-CATACTAAGATAGC 145
consensus_80#1      CTATAAATTACCTATAAATTAAAAATTAGATAAAATTTAAAATTAATGAGCTACAATA-C 239
                      ** **  *   * *********** * * * *  **** ****     ***  *** *

consensus_80#0      CATGAGCTTGATTTCGACGACGACCAATCAAGTACGCGATCAATACTATAATCACTAATC 205
consensus_80#1      AATAGTAATATTATTTACTTTTTTATATGAATTAAAAAAGTA-TATTTAAATGTATAGTA 298
                     **     *  * *  **        ** ** **    *  * ** *  ***   ** * 

consensus_80#0      CTGCCAATGCACAGCCTACTGCTATTGGTACGACGTCTGGTGTATCAAAAGCGCAATCTT 265
consensus_80#1      -TACAAATATAAAAATTAATTTTTTAAATACATACAATTATAT-TGAATATTGAACTCAT 356
                     * * ***  * *   ** *  * *   ***      *  * * * ** *  * * ** *

consensus_80#0      TGGCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATA 325
consensus_80#1      TACCTAAACCAAACATAGTAGAATTATCAACTTTGAATGCTTGAAATTGGAGTCCTGATA 416
                    *  *********************************************************

consensus_80#0      CAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTT 385
consensus_80#1      CAATTAAATAACCAGATGTCTCATTACTATTATTCTGTTTTAAGTTGAGTGTTTGTTGTT 476
                    ************************************************************

consensus_80#0      TTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAG 445
consensus_80#1      TTAAACATCTATAAGAATTAGATAATCTAACTTCAAAATCAGGTGTTTCATGTACTAAAG 536
                    ************************************************************

consensus_80#0      ATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCA 505
consensus_80#1      ATACTGATCCATTCAGTTTTAAATTTGAAGGAAAATCTGATGCTGGAAGAATGACTTCCA 596
                    ************************************************************

consensus_80#0      AATGGTGAAGAGAATAATCATTTTCAGTTGCATTTCTCATAAAATGCAATGTCATACTAC 565
consensus_80#1      AATGGTGAAGAGAATAATCATTT------------------------------------- 619
                    ***********************                                     

consensus_80#0      CATTAGTTATATTTTTAGCAGACCATTCTAATGTCAAATTTTGTTCCAGTTTTCCACAAT 625
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      ATCCACTTGCTTTTGTAGTAACATTATCTGTTGGTATATCGAATGTTATAAAAGATGTCT 685
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TATTATTAATGTTGACATAAGAGATATTAAACATTACAGACATCTGTATTACAATACAAA 745
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TTTGATCTGTTCCATTAACAACTGTCCATTTACCAGTTGTGTAAGAAGACAAGGTAGAAT 805
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TTATTGGAGCATGTATAACTATTGGATTAGTTATATCCGAAATTTTTTTAGATGTTTCAT 865
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TTGTAGAAATTGAAATAGCTGTCATATCTAATGGCATGACAATAGAATGATTGGGAATAA 925
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TTGTAGAAGTTTGAAGAGAATTTTTAATAACTTCTTGTTGCTTTATTTTATTCTCTGTGT 985
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TTGAAATAATTCCTAAATCTGTCATGGAAATATTCTTATTTGATAGAATATTTGCTTTTA 1045
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      AATATTCGGAATCATTTTGTAAAGATGTCCTGGGAGAAGTGAGAAGAGTATCATTCTTTT 1105
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      TAGATAAAACATTTTCCTGGTCTTCACCTAGAACGTGGACAGCAGTAAAGCAAAGAAGCA 1165
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      ATAAAAACTTCGACATCATTAGAAGTTTTGAATTGCTAAAAATAAGTAAAATTCACTGAA 1225
consensus_80#1      ------------------------------------------------------------
                                                                                

consensus_80#0      AATTCAAACGTTTATAACTATTAAACAAATTGAACACTAATATAAGTGGAC 1276
consensus_80#1      ---------------------------------------------------
                                                                       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)