These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence [ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAAAATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGTCGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAAAGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAGAAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACAT] [+] EMBL BI507261 [ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAAAATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGTCGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGAAAAAAAAA ] [+] EMBL BI504785 [ GTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATATTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAAAGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAGAAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACAT] consensusID : consensus_811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTCTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACACGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATATATATATATATATATATATATATATATATATATATATATA] [+] EMBL BI507107 [AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTCTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACACGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATATATATATATATATATATATATATATATATATATATATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_811#0 ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAA 60 consensus_811#1 ------------------------------------------------------------ consensus_811#0 AATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGT 120 consensus_811#1 ------------------------------------------------------------ consensus_811#0 CGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACC 180 consensus_811#1 ------------------------------------------------------------ consensus_811#0 GTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAA 240 consensus_811#1 ------------------------------------------------------------ consensus_811#0 AGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAG 300 consensus_811#1 ------------------------------------------------------------ consensus_811#0 AAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCC 360 consensus_811#1 --------------------AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCC 40 ***************** ********************** consensus_811#0 GATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTG 420 consensus_811#1 GATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTG 100 ************************************************************ consensus_811#0 TACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAG 480 consensus_811#1 TACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAG 160 ************************************************************ consensus_811#0 TGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCG 540 consensus_811#1 TGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCG 220 ************************************************************ consensus_811#0 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCT 600 consensus_811#1 CTCTCTCTCTCTCTCTCTCTCTCT--------------TTCGTTCTTTCTCTCTTTCTCT 266 ************************ **** *************** consensus_811#0 CTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCAT 660 consensus_811#1 CTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCAT 326 ************************************************************ consensus_811#0 GTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTC 720 consensus_811#1 GTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTC 386 ************************************************************ consensus_811#0 CGCAAGTACATGCATGTCAGTATTTTACAT------------------------------ 750 consensus_811#1 CGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACA 446 ****************************** consensus_811#0 ------------------------------------------------------------ consensus_811#1 CGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATAT 506 consensus_811#0 --------------------------------------- consensus_811#1 ATATATATATATATATATATATATATATATATATATATA 545 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |