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Apis mellifera
cluster # 812 cluster # 812       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_812#0 length = 430 sequences # 1  
 consensus_812#1 length = 417 sequences # 2  
consensusID : consensus_812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence 
                              [CTACAAGTACGATCCTGAAAACTCAAAATCAGAAGCAGAAGCTCGAGATGATTGTGTATAAACAGAAATACCCCCACCGATTGCGCTATCCGAAGTTCCTTCGCCCGTTACAAAATCGGCGACTATCAACGAATCCTTGGGAAGGTTTCCGCTTCCATCTTTCAACGCATCTCGCTCGGCCAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCTTTCACGGCAATGAGTTTCTGAAGCTCGGCATTCTCGCTAAGAAGTTTGTGNNATTTTTCCTCGTCCTCTTTCGACATACCCACATCGGTATTGTACTTAGATTCAGCCTTATCTTTCGGATGTCGATATACAACGTGGTTGTTCTCTGTTTGATCACAGCTCCCGTGACAATGGTGATCGCCAGCCAGCAGGACGCCAGTTTCGCATTCGTCGCCC]

[+] EMBL BI515014             [CTACAAGTACGATCCTGAAAACTCAAAATCAGAAGCAGAAGCTCGAGATGATTGTGTATAAACAGAAATACCCCCACCGATTGCGCTATCCGAAGTTCCTTCGCCCGTTACAAAATCGGCGACTATCAACGAATCCTTGGGAAGGTTTCCGCTTCCATCTTTCAACGCATCTCGCTCGGCCAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCTTTCACGGCAATGAGTTTCTGAAGCTCGGCATTCTCGCTAAGAAGTTTGTGNNATTTTTCCTCGTCCTCTTTCGACATACCCACATCGGTATTGTACTTAGATTCAGCCTTATCTTTCGGATGTCGATATACAACGTGGTTGTTCTCTGTTTGATCACAGCTCCCGTGACAATGGTGATCGCCAGCCAGCAGGACGCCAGTTTCGCATTCGTCGCCC]




>consensus_812#0
CTACAAGTACGATCCTGAAAACTCAAAATCAGAAGCAGAAGCTCGAGATGATTGTGTATA
AACAGAAATACCCCCACCGATTGCGCTATCCGAAGTTCCTTCGCCCGTTACAAAATCGGC
GACTATCAACGAATCCTTGGGAAGGTTTCCGCTTCCATCTTTCAACGCATCTCGCTCGGC
CAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCTTTCACGGCAATGAGTTTCTGAAGCTC
GGCATTCTCGCTAAGAAGTTTGTGNNATTTTTCCTCGTCCTCTTTCGACATACCCACATC
GGTATTGTACTTAGATTCAGCCTTATCTTTCGGATGTCGATATACAACGTGGTTGTTCTC
TGTTTGATCACAGCTCCCGTGACAATGGTGATCGCCAGCCAGCAGGACGCCAGTTTCGCA
TTCGTCGCCC

consensusID : consensus_812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 417
fasta sequence 
                              [TTTTTTTTGCCTTGTGAGAGCTTTTAGCTCGTATTATATGCTCGTATTGCTTTTGTCATCCTAATTGACGGGGCTCTTGCGTTCAGCCAACCTGGTCCGTTTCGATTGCGCTATCCGAAGTTCCTTCGCCCGTTACAAAATCGGCGACTATCAACGAATCCTTGGGAAGGTTTCCGCTCCCATCTTTCAACGCATCTCGCTCGGCCAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCTTTCACGGCAATGAGTTTCTGAAGCTCGGCATTCTCGCTAAGAAGTTTGTGGTATTTTTCCTCGTCCTCTTTCGACATACCCACATCGGTATTGTACTTAGATTCAGCCTTATCTTTCGGATGTCTGATCACTTCGATCACTTTAGGCACAAAGATCAGCGCCATGCTTAAAAAAAAAA]

[-] EMBL BI507880             [TTTTTTTTGCCTTGTGAGAGCTTTTAGCTCGTATTATATGCTCGTATTGCTTTTGTCATCCTAATTGACGGGGCTCTTGCGTTCAGCCAACCTGGTCCGTTTCGATTGCGCTATCCGAAGTTCCTTCGCCCGTTACAAAATCGGCGACTATCAACGAATCCTTGGGAAGGTTTCCGCTTCCATCTTTCAACGCATCTCGCTCGGCCAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCTTTCACGGCAATGAGTTTCTGAAGCTCGGCATTCTCGCTAAGAAGTTTGTGGTATTTTTCCTCGTCCTCTTTCGACATACCCACATCGGTATTGTACTTAGATTCAGCCTTATCTTTCG                                                            ]
[+] EMBL BI503805             [                                                              AATTGACGGGGCTCTTGCGTTCAGCCAACCTGGTCCGTTTCGATTGCGCTATCCGAAGTTCCTTCGCCTGTTACAAAATCGGCGACTATCAACGAATCCTTGGGAAGGTTTCCGCTCCCTTCTTTCAACGCATCTCGCTCGGCCAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCTTTCACGGCAATGAGTTTCTGAAGCTCGGCATTCTCGCTAAGAAGTTTGTGGTATTTTTCCTCGTCCTCTTTCGACATACCCACATCGGTATTGTACTTAGATTCAGCCTTATCTTTCGGATGTCTGATCACTTCGATCACTTTAGGCACAAAGATCAGCGCCATGCTTAAAAAAAAAA]




>consensus_812#1
TTTTTTTTGCCTTGTGAGAGCTTTTAGCTCGTATTATATGCTCGTATTGCTTTTGTCATC
CTAATTGACGGGGCTCTTGCGTTCAGCCAACCTGGTCCGTTTCGATTGCGCTATCCGAAG
TTCCTTCGCCCGTTACAAAATCGGCGACTATCAACGAATCCTTGGGAAGGTTTCCGCTCC
CATCTTTCAACGCATCTCGCTCGGCCAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCTT
TCACGGCAATGAGTTTCTGAAGCTCGGCATTCTCGCTAAGAAGTTTGTGGTATTTTTCCT
CGTCCTCTTTCGACATACCCACATCGGTATTGTACTTAGATTCAGCCTTATCTTTCGGAT
GTCTGATCACTTCGATCACTTTAGGCACAAAGATCAGCGCCATGCTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_812#0      --------------------CTACAAGTACGATCCTGAAAACTCAAAAT----CAGAAGC 36
consensus_812#1      TTTTTTTTGCCTTGTGAGAGCTTTTAGCTCG-TATTATATGCTCGTATTGCTTTTGTCAT 59
                                         **   **  ** *  *  *  ***  * *      *    

consensus_812#0      AGAAGCT--CGAGATGATTGTGTATAAACAGAAATACCCCCACCGATTGCGCTATCCGAA 94
consensus_812#1      CCTAATTGACGGGGCTCTTGCGTTCAGCCAACCTGGTCCGTTTCGATTGCGCTATCCGAA 119
                        *  *  ** *    *** **  *  **       **    *****************

consensus_812#0      GTTCCTTCGCCCGTTACAAAATCGGCGACTATCAACGAATCCTTGGGAAGGTTTCCGCTT 154
consensus_812#1      GTTCCTTCGCCCGTTACAAAATCGGCGACTATCAACGAATCCTTGGGAAGGTTTCCGCTC 179
                     *********************************************************** 

consensus_812#0      CCATCTTTCAACGCATCTCGCTCGGCCAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCT 214
consensus_812#1      CCATCTTTCAACGCATCTCGCTCGGCCAGAGTCTGTTTCAGAAATTTGATCTTCTCTTCT 239
                     ************************************************************

consensus_812#0      TTCACGGCAATGAGTTTCTGAAGCTCGGCATTCTCGCTAAGAAGTTTGTGNNATTTTTCC 274
consensus_812#1      TTCACGGCAATGAGTTTCTGAAGCTCGGCATTCTCGCTAAGAAGTTTGTGGTATTTTTCC 299
                     **************************************************  ********

consensus_812#0      TCGTCCTCTTTCGACATACCCACATCGGTATTGTACTTAGATTCAGCCTTATCTTTCGGA 334
consensus_812#1      TCGTCCTCTTTCGACATACCCACATCGGTATTGTACTTAGATTCAGCCTTATCTTTCGGA 359
                     ************************************************************

consensus_812#0      TGTCGATATACAACGTGGTTGTTCTCTGTTTGATCACAGCTCCCGTGACAATGGTGATCG 394
consensus_812#1      TGTC--TGATCACTTCGATCACTTTAGGCACAAAGATCAGCGCCATGCTTAAAAAAAAAA 417
                     ****  *   **    * *   * *  *    *  *      ** **   *     *   

consensus_812#0      CCAGCCAGCAGGACGCCAGTTTCGCATTCGTCGCCC 430
consensus_812#1      ------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)