These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GAAGGCTGATGATGGAACACCATTCGTCGAATTGCTGAAACAACGTAATATCTTGCCAGGTATCAAGGTTGACACAGGTGTAGTAACATTATTTGGTACCGAGGAAGAAACCACTACGCAGGGTCTCGACAATCTTCAAGCTCGTTGTATTCAATACAAGAAAGATGGATGTCAATTCGCCAAATGGAGATGCGTGCTGAAAATCAGAAAAGATTGTCCCAGCAAATTGGCCATTTTGGAAAATGCCAATGTTTTGGCTCGTTACGCTTCTATTTGTCAAAGTGCTAGAATTGTGCCAATCGTCGAGCCTGAGATTTTACCCGATGGTGATCATGATCTTGCCCGTTGCCAACAGGTCACGGAAGAAGTATTGGCCGCCGTGTACAAGGCACTCAGTGACCATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCC] [+] EMBL BI515079 [GAAGGCTGATGATGGAACACCATTCGTCGAATTGCTGAAACAACGTAATATCTTGCCAGGTATCAAGGTTGACACAGGTGTAGTAACATTATTTGGTACCGAGGAAGAAACCACTACGCAGGGTCTCGACAATCTTCAAGCTCGTTGTATTCAATACAAGAAAGATGGATGTCAATTCGCCAAATGGAGATGCGTGCTGAAAATCAGAAAAGATTGTCCCAGCAAATTGGCCATTTTGGAAAATGCCAATGTTTTGGCTCGTTACGCTTCTATTTGTCAAAGTGCTAGAATTGTGCCAATCGTCGAGCCTGAGATTTTACCCGATGGTGATCATGATCTTGCCCGTTGCCAACAGGTCACGGAAGAAGTATTGGCCGCCGTGTACAAGGCACTCAGTGACCATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCC] consensusID : consensus_815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence [CATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCCAAATAAAGCGTCACCTCAGGAAATCGCAGCAGCTACTGTGACCGCTTTATTGCGTACTGTTCCACCTGCAGTACCTGGAATTACTTTCCTCAGCGGCGGTCAATCAGAAGAGGAGGCGTCTGTGAATCTGGATGCTATTAATAAGTTCCCCGCGAACAAACCTTGGGCTTTGACCTTCAGCTATGGCCGTGCTCTTCAAGCTTCCGTGCTTCGCGCATGGGGAGGCAAGAAGGAACAGATTAGCGCTGGCCAGGAAGAGCTTATCAAGAGGGCTAAGGCTAACAGCGAATCGGCACTCGGCAAATACAGCGGTGGTGTAGTGGGAGCTGCTGGCAATGCTACGCTTTTCGTCGCGAATCACGCGTACTAAAATAATCATTAAAATATTGATAAAAAAAA] [+] EMBL BI510892 [CATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCCAAATAAAGCGTCACCTCAGGAAATCGCAGCAGCTACTGTGACCGCTTTATTGCGTACTGTTCCACCTGCAGTACCTGGAATTACTTTCCTCAGCGGCGGTCAATCAGAAGAGGAGGCGTCTGTGAATCTGGATGCTATTAATAAGTTCCCCGCGAACAAACCTTGGGCTTTGACCTTCAGCTATGGCCGTGCTCTTCAAGCTTCCGTGCTTCGCGCATGGGGAGGCAAGAAGGAACAGATTAGCGCTGGCCAGGAAGAGCTTATCAAGAGGGCTAAGGCTAACAGCGAATCGGCACTCGGCAAATACAGCGGTGGTGTAGTGGGAGCTGCTGGCAATGCTACGCTTTTCGTCGCGAATCACGCGTACTAAAATAATCATTAAAATATTGATAAAAAAAA] [+] EMBL BI511924 [CATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCCAAATAAAGCGTCACCTCAGGAAATCGCAGCAGCTACTGTGACCGCTTTATTGCGTACTGTTCCACCTGCAGTACCTGGAATTACTTTCCTCAGCGGCGGTCAATCAGAAGAGGAGGCGTCTGTGAATCTGGATGCTATTAATAAGTTCCCCGCGAACAAACCTTGGGCTTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_815#0 GAAGGCTGATGATGGAACACCATTCGTCGAAT-TGCTGAAACAACGTAATATCTTGCCAG 59 consensus_815#1 -------CATCATGTG-TATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAG 52 ** *** * * * * * * * ****** * * **** consensus_815#0 GTATCAAGGTTGACACAGGTGTAGTAACATTATTTGGTACCGAGGAAGAAACCACTACGC 119 consensus_815#1 GA--CAGAGTTG-CCCAAATAAAGCGTCACCTCAGGAAATCGCAGCAGCTACTGTGAC-C 108 * ** **** * ** * ** ** * * ** * ** ** ** * consensus_815#0 AGGGTCTCGACAATCTTCAAGCTCGTTGTATTCAATACAAGAAAGATGGATGTCAATTCG 179 consensus_815#1 GCTTTATTGCGTACTGTTCCACCTGCAGTACCTGGAATTACTTTCCTCAGCGGCGGTCAA 168 * * * * * * * *** * * * * * * consensus_815#0 CCAAATGGAGATGCGTGCTGAAAATCAGAA-------AAGATTGTCCCAGCAAATTGGCC 232 consensus_815#1 TCAGAAGAGGAGGCGT-CTGTGAATCTGGATGCTATTAATAAGTTCCCCGCGAACAAACC 227 ** * * ** **** *** **** * * ** * **** ** ** ** consensus_815#0 AT----TTTGGAAAATGCCAATGTTTTGGCTCGTTACGCTTCTATTTGTCAAAGTGCTAG 288 consensus_815#1 TTGGGCTTTGACCTTCAGCTATGGCCGTGCTCTTCAAGCTTCCGTGCTTC---GCGCATG 284 * **** * *** **** * * ***** * ** * ** * consensus_815#0 AATTGTGCCAATCGTCGAGCCTGAGATTTTACCCGATGGTGATCATGATCTTGCCCGTTG 348 consensus_815#1 GGGAG-GCAAGAAGGAACAGATTAGCGCTGGCCAGGAAGAGCTTATCAAGAGGGCTAAGG 343 * ** * * * ** * ** * * * * ** * * * * consensus_815#0 CCAACAG------GTCACGGAAGAAGTATTGGCCGCCGTGTACAAGGCACT-CAGTGACC 401 consensus_815#1 CTAACAGCGAATCGGCACTCGGCAAATAC-AGCGGTGGTGTAGTGGGAGCTGCTGGCAAT 402 * ***** * *** ** ** ** * ***** ** ** * * * consensus_815#0 ATCATGTGTATCTTGAGGGA--ACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAG 459 consensus_815#1 GCTACGCTTTTCGTCGCGAATCACGCGTACTAAAATAATCATTAAAATATTGATAAAAAA 462 * * * ** * * * ** * * *** * *** ** * * * * consensus_815#0 TTGCCC 465 consensus_815#1 AA---- 464 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |