These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence [AACGTTTGGGATTCCATGAAGGCTGAACGAGCCGGAATTCTTGCCGGTCACGATAATCGTGTGTCTTGCCTGGGCGTTACGGAGGATGGTATGGCAGTAGGGACGGGCTCATGGGACTCATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAACTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGCGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTNNCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAACGGGGAGCAGCACCAAGGCTGACGGCCATATCTCTCCGATGTCGTGCGCGTTACTTCCTTTCTCTCCTCCCCTTTCTCAAGGA] [+] EMBL BI516722 [AACGTTTGGGATTCCATGAAGGCTGAACGAGCCGGAATTCTTGCCGGTCACGATAATCGTGTGTCTTGCCTGGGCGTTACGGAGGATGGTATGGCAGTAGGGACGGGCTCATGGGACTCATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAACTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGCGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTNNCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTA ] [+] EMBL BI513440 [ AACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAACGGGGAGCAGCACCAAGGCTGACGGCCATATCTCTCCGATGTCGTGCGCGTTACTTCCTTTCTCTCCTCCCCTTTCTCAAGGA] consensusID : consensus_838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [ATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAACTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGCGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCAGGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGATGATGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAA] [+] EMBL BI509975 [ATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAACTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGCGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCAGGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGATGATGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_838#0 AACGTTTGGGATTCCATGAAGGCTGAACGAGCCGGAATTCTTGCCGGTCACGATAATCGT 60 consensus_838#1 ------------------------------------------------------------ consensus_838#0 GTGTCTTGCCTGGGCGTTACGGAGGATGGTATGGCAGTAGGGACGGGCTCATGGGACTCA 120 consensus_838#1 -----------------------------------------------------------A 1 * consensus_838#0 TTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAAC 180 consensus_838#1 TTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAAC 61 ************************************************************ consensus_838#0 TACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGC 240 consensus_838#1 TACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGC 121 ************************************************************ consensus_838#0 GTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATC 300 consensus_838#1 GTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATC 181 ************************************************************ consensus_838#0 AGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGT 360 consensus_838#1 AGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCAGGGTAGTAGCGGCGGT 241 ******************************************** *************** consensus_838#0 AGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGC 420 consensus_838#1 AGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGC 301 ************************************************************ consensus_838#0 GTCGTCGATTTAACCTNNCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAG 480 consensus_838#1 GTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAG 361 **************** ****************************************** consensus_838#0 CGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGA 540 consensus_838#1 CGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGA 421 ************************************************************ consensus_838#0 TGATGAT------------CGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAACGGGG 588 consensus_838#1 TGATGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAA----- 476 ******* ************************************ consensus_838#0 AGCAGCACCAAGGCTGACGGCCATATCTCTCCGATGTCGTGCGCGTTACTTCCTTTCTCT 648 consensus_838#1 ------------------------------------------------------------ consensus_838#0 CCTCCCCTTTCTCAAGGA 666 consensus_838#1 ------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |