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Apis mellifera
cluster # 875 cluster # 875       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_875#0 length = 1155 sequences # 2  
consensus_875#1 length = 581 sequences # 1  

consensusID : consensus_875#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1155
fasta sequence
                              [AGAAGAAAAATACATGAAGTCACAACCTGCTGAAGTAATGCCTTTAGAAAGTTCTTTATCTGAGTTACGCGATCCTACACAATATGTTGGTCTAAAGAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTNGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAACTGAAGCAGATGCTGCAGAGGCTGACCCAAGGAAAATACAGCTATATCAATTGGTGGGTTTTCTGAAGTGGAAAACAAATGAGAATTGTCCTAAACGATGATGATGCTGATGATCTTGACGATGAGAACATGTTGCTCGAAATGCGGAACTGAATATCCAACGTCCACAACGTTCTACGAATTGGATCTACAACTTGCAGCCACTTTGAAAGAGGCAATAGAGAAATACTTGTCTGTGGAACAGTTGACTGGAGCAAATCAGTATCACTGCGTTACCTGCAATGACAAAAAAGATGCGCGCCGTTTTATACGCTTGGAATCTCTTCCAGAAACATTAAATATACAGTTAATGCGTTTTGTGTTTCATAGAGATTCTGGGCAGAAAAGAAAGTTGAATTCTTTTATACAATTTCCCGAAGATCTTGATATGTCAGAATATGTGAGGTGTCCATTACAAACTCATTTGTACAGTCTTGTAGCAGTTTTGAGTCATAAAGGACCATCTGCACATTCGGGTCATTATATTGCAAATATATGCAATTCAAATGGGGAATGGTATCAATTTAGTGATGATAAAGTAGAAAAAATGCAGAATAAAAGAATCGAGGATGGAGTTAATGAGAATTCAAAGATTATAAAACGAGGTCGTATACCGAAAGGATTTTTATCTTCTAACACTGCATATCATGTTAGTTTATAAAAAAGTTACTTCTGAAAAA]

[+] EMBL BI508978             [AGAAGAAAAATACATGAAGTCACAACCTGCTGAAGTAATGCCTTTAGAAAGTTCTTTATCTGAGTTACGCGATCCTACACAATATGTTGGTCTAAAGAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTNGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAACTGAAGCAGATGCTGCAGAGGCTGACCCAAGGAAAATACAGCTATATCAATTGGTGGGTTTTCTGAAGTGGAAAACAAATGAGAATTGTCCTAAACGATGATGATGCTGATGATCTTGACGATGAGAACATGTTGCTCGAAATGCGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BQ103762             [                                                                                                                                                                                                                                                                                                                                 TCCAATGAACCTTGCAATCGTGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAACTGAAGCAGATGCTGCAGAGGCTGACCCAAGGAAAATACAGCTATATCAATTGGTGGGTTTTCTGAAGTGGAAAACAAATGAGAATTGTCCTAAACGATGATGATGCTGATGATCTTGACGATGAGAACATGTTGCTCGAAATGCGGAACTGAATATCCAACGTCCACAACGTTCTACGAATTGGATCTACAACTTGCAGCCACTTTGAAAGAGGCAATAGAGAAATACTTGTCTGTGGAACAGTTGACTGGAGCAAATCAGTATCACTGCGTTACCTGCAATGACAAAAAAGATGCGCGCCGTTTTATACGCTTGGAATCTCTTCCAGAAACATTAAATATACAGTTAATGCGTTTTGTGTTTCATAGAGATTCTGGGCAGAAAAGAAAGTTGAATTCTTTTATACAATTTCCCGAAGATCTTGATATGTCAGAATATGTGAGGTGTCCATTACAAACTCATTTGTACAGTCTTGTAGCAGTTTTGAGTCATAAAGGACCATCTGCACATTCGGGTCATTATATTGCAAATATATGCAATTCAAATGGGGAATGGTATCAATTTAGTGATGATAAAGTAGAAAAAATGCAGAATAAAAGAATCGAGGATGGAGTTAATGAGAATTCAAAGATTATAAAACGAGGTCGTATACCGAAAGGATTTTTATCTTCTAACACTGCATATCATGTTAGTTTATAAAAAAGTTACTTCTGAAAAA]


>consensus_875#0 AGAAGAAAAATACATGAAGTCACAACCTGCTGAAGTAATGCCTTTAGAAAGTTCTTTATC TGAGTTACGCGATCCTACACAATATGTTGGTCTAAAGAATTTAGGTGCAACCTGTTATGT TAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTG GAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGT ACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATT TGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTNG AACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACT TCAACAAAACTCAGAACTGAAGCAGATGCTGCAGAGGCTGACCCAAGGAAAATACAGCTA TATCAATTGGTGGGTTTTCTGAAGTGGAAAACAAATGAGAATTGTCCTAAACGATGATGA TGCTGATGATCTTGACGATGAGAACATGTTGCTCGAAATGCGGAACTGAATATCCAACGT CCACAACGTTCTACGAATTGGATCTACAACTTGCAGCCACTTTGAAAGAGGCAATAGAGA AATACTTGTCTGTGGAACAGTTGACTGGAGCAAATCAGTATCACTGCGTTACCTGCAATG ACAAAAAAGATGCGCGCCGTTTTATACGCTTGGAATCTCTTCCAGAAACATTAAATATAC AGTTAATGCGTTTTGTGTTTCATAGAGATTCTGGGCAGAAAAGAAAGTTGAATTCTTTTA TACAATTTCCCGAAGATCTTGATATGTCAGAATATGTGAGGTGTCCATTACAAACTCATT TGTACAGTCTTGTAGCAGTTTTGAGTCATAAAGGACCATCTGCACATTCGGGTCATTATA TTGCAAATATATGCAATTCAAATGGGGAATGGTATCAATTTAGTGATGATAAAGTAGAAA AAATGCAGAATAAAAGAATCGAGGATGGAGTTAATGAGAATTCAAAGATTATAAAACGAG GTCGTATACCGAAAGGATTTTTATCTTCTAACACTGCATATCATGTTAGTTTATAAAAAA GTTACTTCTGAAAAA



consensusID : consensus_875#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence
                              [TTTTACATTCAGATAATGTTGTAAAAGAAAAACAGTACTTTACAATATTCACAGCGGCATCTTTCATAACCTCAACAATCAGGAACATACAGTACTTCTATGTAAAAATGCCACCAACAAAAAAGACTGATTTAGACAAATTAGCATGGGCTTGGGTGGAAGGTGTGGTTTTAGACCAAATAGAAAGGATACATTTGGAAACTGCTTATAGAATAGGTTTAAAAGCATGTAAAAATTGCAAAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAAC]

[+] EMBL BI503508             [TTTTACATTCAGATAATGTTGTAAAAGAAAAACAGTACTTTACAATATTCACAGCGGCATCTTTCATAACCTCAACAATCAGGAACATACAGTACTTCTATGTAAAAATGCCACCAACAAAAAAGACTGATTTAGACAAATTAGCATGGGCTTGGGTGGAAGGTGTGGTTTTAGACCAAATAGAAAGGATACATTTGGAAACTGCTTATAGAATAGGTTTAAAAGCATGTAAAAATTGCAAAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAAC]


>consensus_875#1 TTTTACATTCAGATAATGTTGTAAAAGAAAAACAGTACTTTACAATATTCACAGCGGCAT CTTTCATAACCTCAACAATCAGGAACATACAGTACTTCTATGTAAAAATGCCACCAACAA AAAAGACTGATTTAGACAAATTAGCATGGGCTTGGGTGGAAGGTGTGGTTTTAGACCAAA TAGAAAGGATACATTTGGAAACTGCTTATAGAATAGGTTTAAAAGCATGTAAAAATTGCA AAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGA TATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACT ATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCA ATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGC AATCGCGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCT TCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_875#0      ------------------------------------------------------------
consensus_875#1      TTTTACATTCAGATAATGTTGTAAAAGAAAAACAGTACTTTACAATATTCACAGCGGCAT 60
                                                                                 

consensus_875#0      ------------------------------------------------------------
consensus_875#1      CTTTCATAACCTCAACAATCAGGAACATACAGTACTTCTATGTAAAAATGCCACCAACAA 120
                                                                                 

consensus_875#0      -------------------------------AGAAGAAAAATACATGAAGTCACAACCTG 29
consensus_875#1      AAAAGACTGATTTAGACAAATTAGCATGGGCTTGGGTGGAAGGTGTGGTTTTAGACCAAA 180
                                                        *   **    **   * * * *   

consensus_875#0      CTGAAGTAATGCCTTTAGAAAGTTCTTTATCTGAGTTACGCGATCCTACACAATATGTTG 89
consensus_875#1      TAGAAAGGATACATTTGGAAACTGCT---TATAGAATA---GGTTTAAAAGCATGTAAAA 234
                       ***   ** * *** **** * **   * *    **   * *   * *  ** *    

consensus_875#0      GTCTAAAGAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATA 149
consensus_875#1      AT-TGCAAAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATA 293
                      * *  * ****************************************************

consensus_875#0      ATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGG 209
consensus_875#1      ATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGG 353
                     ************************************************************

consensus_875#0      AAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGAC 269
consensus_875#1      AAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGAC 413
                     ************************************************************

consensus_875#0      AGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGA 329
consensus_875#1      AGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGA 473
                     ************************************************************

consensus_875#0      ACCTTGCAATCGCGTTGTCATTGGATACTNGAACTCAGCAGGATGCACAGGAATTCTCCA 389
consensus_875#1      ACCTTGCAATCGCGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCA 533
                     ***************************** ******************************

consensus_875#0      AGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAACTGAAGCAGATGC 449
consensus_875#1      AGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAAC------------ 581
                     ************************************************            

consensus_875#0      TGCAGAGGCTGACCCAAGGAAAATACAGCTATATCAATTGGTGGGTTTTCTGAAGTGGAA 509
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AACAAATGAGAATTGTCCTAAACGATGATGATGCTGATGATCTTGACGATGAGAACATGT 569
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TGCTCGAAATGCGGAACTGAATATCCAACGTCCACAACGTTCTACGAATTGGATCTACAA 629
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      CTTGCAGCCACTTTGAAAGAGGCAATAGAGAAATACTTGTCTGTGGAACAGTTGACTGGA 689
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GCAAATCAGTATCACTGCGTTACCTGCAATGACAAAAAAGATGCGCGCCGTTTTATACGC 749
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTGGAATCTCTTCCAGAAACATTAAATATACAGTTAATGCGTTTTGTGTTTCATAGAGAT 809
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TCTGGGCAGAAAAGAAAGTTGAATTCTTTTATACAATTTCCCGAAGATCTTGATATGTCA 869
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GAATATGTGAGGTGTCCATTACAAACTCATTTGTACAGTCTTGTAGCAGTTTTGAGTCAT 929
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AAAGGACCATCTGCACATTCGGGTCATTATATTGCAAATATATGCAATTCAAATGGGGAA 989
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TGGTATCAATTTAGTGATGATAAAGTAGAAAAAATGCAGAATAAAAGAATCGAGGATGGA 1049
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GTTAATGAGAATTCAAAGATTATAAAACGAGGTCGTATACCGAAAGGATTTTTATCTTCT 1109
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AACACTGCATATCATGTTAGTTTATAAAAAAGTTACTTCTGAAAAA 1155
consensus_875#1      ----------------------------------------------
                                                                   




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)