These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [TTTTGTGTAGGGTACGTTAAATTAGTGGTAAAGAAACAGATTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGAGGTTCACAACATTTGATCTCGGAGGACATCCCCAAGATACATTACAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATGCACTTTTAACTGATGAACAACTTAGTTCATGTCCAGTTTTAGTGCTAGGTAAT] [+] EMBL BI503485 [TTTTGTGTAGGGTACGTTAAATTAGTGGTAAAGAAACAGATTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGAGGTTCACAACATTTGATCTCGGAGGACATCCCCAAGATACATTACAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATGCACTTTTAACTGATGAACAACTTAGTTCATGTCCAGTTTTAGTGCTAGGTAAT] consensusID : consensus_885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [TTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGANNNTCACAACATTTGATCTCGGAGNACATCCCCAAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATGCACTTTT] [+] EMBL BI506204 [TTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGANNNTCACAACATTTGATCTCGGAGNACATCCCCAAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATGCACTTTT] consensusID : consensus_885#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [GGAGCGGCGTTGCTTTTTTTTGTAGATATAAATGAATGTCAGGTCCACTGTGTACTAACTATTGAATGACTCCTACACATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTT] [+] EMBL BI511943 [GGAGCGGCGTTGCTTTTTTTTGTAGATATAAATGAATGTCAGGTCCACTGTGTACTAACTATTGAATGACTCCTACACATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_885#0 TTTTGTGTAGGGTACGTTAAATTAGTGGTAAAGAAACAGATTTAGTGTAATTATACCATG 60 consensus_885#1 ----------------------------------------TTTAGTGTAATTATACCATG 20 consensus_885#2 ------------------------------------------------------------ consensus_885#0 CGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAA 120 consensus_885#1 CGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAA 80 consensus_885#2 ----------------------------------------------------GGAGCGGC 8 consensus_885#0 ACTGTTATTAGGTG-AGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTC 179 consensus_885#1 ACTGTTATTAGGTG-AGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTC 139 consensus_885#2 GTTGCTTTTTTTTGTAGATATAAAT----GAATGTCAGGTCCACTGTGTACTAACTATTG 64 ** * ** ** **** * * * *** ** *** *** ** *** consensus_885#0 ATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGG 239 consensus_885#1 ATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGG 199 consensus_885#2 AATGACTCCTACACATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGG 124 * * * ***** ********************************************** consensus_885#0 TCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTAC 299 consensus_885#1 TCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTAC 259 consensus_885#2 TCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTAC 184 ************************************************************ consensus_885#0 ATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAAC 359 consensus_885#1 ATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAAC 319 consensus_885#2 ATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAAC 244 ************************************************************ consensus_885#0 TTCAGAAGAACTTTCCATTGGAAATATGAGGTTCACAACATTTGATCTCGGAGGACATCC 419 consensus_885#1 TTCAGAAGAACTTTCCATTGGAAATATGANNNTCACAACATTTGATCTCGGAGNACATCC 379 consensus_885#2 TTCAGAAGAACTT----------------------------------------------- 257 ************* consensus_885#0 CCAAGATACATTACAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATA 479 consensus_885#1 CCAAG-----------CTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATA 428 consensus_885#2 ------------------------------------------------------------ consensus_885#0 GTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGAT 539 consensus_885#1 GTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGAT 488 consensus_885#2 ------------------------------------------------------------ consensus_885#0 GCACTTTTAACTGATGAACAACTTAGTTCATGTCCAGTTTTAGTGCTAGGTAAT 593 consensus_885#1 GCACTTTT---------------------------------------------- 496 consensus_885#2 ------------------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |