These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence [ATTACAGGTTCCCAAAATTTACATAAACTTTCTAACTGCGCCTGAATAAAAGGTAAGGGAAATACGCGCAAGTTTCGAGTATTGCTTTAAATGTGTCTTTTAAAAATATTAAAAAAAAGAAATAAGAATAGACGCTTCAAGTTTAAAAGAAGAGTAATGTTGACGTTAGAACTCGAAGGGATGCATTGTCTCTGGAACAAACACGCCACGATTTCTACAGTTGTAGTTGTTAAAGCTGGCCCCTCGGGTTTTACGGTGCATGTTGTCTGGCCACAGTAGTAAAAGGAAATGCACCGTTGCACCAACCGGCCGTTACGCATGGACCGTCTCGCGCGCAATGATCCGCTTCTGCATATAAAACGTAATTTTGGTTAAACGGCCTGCGCTCGTTCCATGGGTCCCTTGTATTCCTATCATTCCCACGAGAAAAGTGGTTCACGCCGCGCTCCTCGACTCGCTTTTTGCCTAAGTAACCCTGGCGGTTTCGGTTTTGCGATATGGCCCTCGTAAAAAGTCCCATCCTTCGTCCCCTCCCCCCTCCAAGCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAGAATCACGTTGATTGAAAAGTGAAATACACGATATTACGCAGTATATTCTATACTAAGAGTGGCGTATATACACTATTTTTA] [+] EMBL BI516713 [ATTACAGGTTCCCAAAATTTACATAAACTTTCTAACTGCGCCTGAATAAAAGGTAAGGGAAATACGCGCAAGTTTCGAGTATTGCTTTAAATGTGTCTTTTAAAAATATTAAAAAAAAGAAATAAGAATAGACGCTTCAAGTTTAAAAGAAGAGTAATGTTGACGTTAGAACTCGAAGGGATGCATTGTCTCTGGAACAAACACGCCACGATTTCTACAGTTGTAGTTGTTAAAGCTGGCCCCTCGGGTTTTACGGTGCATGTTGTCTGGCCACAGTAGTAAAAGGAAATGCACCGTTGCACCAACCGGCCGTTACGCATGGACCGTCTCGCGCGCAATGATCCGCTTCTGCATATAAAACGTAATTTTGGTTAAA ] [-] EMBL BI517199 [ GCCCCTCGGGTTTTACGGTGCATGTTGTCTGGCCACAGTAGTAAAAGGAAATGCACCGTTGCACCAACCGGCCGTTACGCATGGACCGTCTCGCGCGCAATGATCCGCTTCTGCATATAAAACGTAATTTTGGTTAAACGGCCTGCGCTCGTTCCATGGGTCCCTTGTATTCCTATCATTCCCACGAGAAAAGTGGTTCACGCCGCGCTCCTCGACTCGCTTTTTGCCTAAGTAACCCTGGCGGTTTCGGTTTTGCGATATGGCCCTCGTAAAAAGTCCCATCCTTCGTCCCCTCCCCCCTCCAAGCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAGAATCACGTTGATTGAAAAGTGAAATACACGATATTACGCAGTATATTCTATACTAAGAGTGGCGTATATACACTATTTTTA] consensusID : consensus_911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [TTCCACGGGCGTCGATGATTCTCGTTCCACCTGGTATTATTAAATTACGGCCCATTTGCTTTATGATACCATCTTCGATATAAACGTCGTTGTCCGTGATCCCATCGTCGTTTACNNNCTTGCCGTTNNTAATCAACAGCCTGTTTTGCGCGCTCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAGAATCACGTTGATTGAAAAGTGAAATANNNGATATTACGCAGTATATTCTATACTAAGAGTGGCGTATATACACTATTTTTACTTGTGAAAAACGCCTCACTTGCGCAAAAATTTTCTTAAAGTGAAAATCAAAA] [-] EMBL BI513236 [TTCCACGGGCGTCGATGATTCTCGTTCCACCTGGTATTATTAAATTACGGCCCATTTGCTTTATGATACCATCTTCGATATAAACGTCGTTGTCCGTGATCCCATCGTCGTTTACNNNCTTGCCGTTNNTAATCAACAGCCTGTTTTGCGCGCTCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAGAATCACGTTGATTGAAAAGTGAAATANNNGATATTACGCAGTATATTCTATACTAAGAGTGGCGTATATACACTATTTTTACTTGTGAAAAACGCCTCACTTGCGCAAAAATTTTCTTAAAGTGAAAATCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_911#0 ATTACAGGTTCCCAAAATTTACATAAACTTTCTAACTGCGCCTGAATAAAAGGTAAGGGA 60 consensus_911#1 ------------------------------------------------------------ consensus_911#0 AATACGCGCAAGTTTCGAGTATTGCTTTAAATGTGTCTTTTAAAAATATTAAAAAAAAGA 120 consensus_911#1 ------------------------------------------------------------ consensus_911#0 AATAAGAATAGACGCTTCAAGTTTAAAAGAAGAGTAATGTTGACGTTAGAACTCGAAGGG 180 consensus_911#1 ------------------------------------------------------------ consensus_911#0 ATGCATTGTCTCTGGAACAAACACGCCACGATTTCTACAGTTGTAGTTGTTAAAGCTGGC 240 consensus_911#1 ------------------------------------------------------------ consensus_911#0 CCCTCGGGTTTTACGGTGCATGTTGTCTGGCCACAGTAGTAAAAGGAAATGCACCGTTGC 300 consensus_911#1 ------------------------------------------------------------ consensus_911#0 ACCAACCGGCCGTTACGCATGGACCGTCTCGCGCGCAATGATCCGCTTCTGCATATAAAA 360 consensus_911#1 ------------------------------------------------------------ consensus_911#0 CGTAATTTTGGTTAAACGGCCTGCGCTCGTTCCATGGGTCCCTTGTATTCCTATCATTCC 420 consensus_911#1 -----------TTCCACGGGCGTCGATGATTCTCGTTCCACCTGGTATTATTAA-ATT-- 46 ** **** * ** * *** *** ***** ** *** consensus_911#0 CACGAGAAAAGTGGTTCACGCCGCGCTCCTCGACTCGCTTTTTGCC-TAAGTAACCCTGG 479 consensus_911#1 -ACGGCCCATTTGCTTTATGATACCATCTTCGATATAAACGTCGTTGTCCGTGATCCCAT 105 *** * ** ** * * * ** **** * * * ** * ** consensus_911#0 CGGTTTCGGTTTTGCGATATGGCCCTCGTAAAAAGTCCCATCCTTCGTCCCCTCCCCCCT 539 consensus_911#1 CGTC----GTTTACNNNCTTGCCGTTNNTAATCAACAGCCTGTTTTGCGCGCTC------ 155 ** **** ** * * *** * * * ** * * *** consensus_911#0 CCAAGCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAG 599 consensus_911#1 ------TGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAG 209 ****************************************************** consensus_911#0 AATCACGTTGATTGAAAAGTGAAATACACGATATTACGCAGTATATTCTATACTAAGAGT 659 consensus_911#1 AATCACGTTGATTGAAAAGTGAAATANNNGATATTACGCAGTATATTCTATACTAAGAGT 269 ************************** ******************************* consensus_911#0 GGCGTATATACACTATTTTTA--------------------------------------- 680 consensus_911#1 GGCGTATATACACTATTTTTACTTGTGAAAAACGCCTCACTTGCGCAAAAATTTTCTTAA 329 ********************* consensus_911#0 -------------- consensus_911#1 AGTGAAAATCAAAA 343 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |