These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence [CGTCAAGAACATTTTTATCGAATTTGACTAAAAAAAAAAAAGAACCCCGTTATTTTATGTATTACGTAGTAAAGATTTTTTTTTCGATTACACTATCTACTTACGAAATGTCTTCGTATCATTTCAAAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATATATATACATATATGTAATCGTCTATTTAATGATCTGTCTACGTCTTCAGGGTATTTTTATCGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAAATATTTCATTGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATGATAATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGGGTTATGTTACGAGAGAATCGAACGGAAAAAAAAAAGAAAAAACGAAGAAAACGTTACGCAATCCTACGAGTGGGGCTGNNNGTGCGTGCGTGCGAGGAACCTGGTTGTATTATGTATAAATGTTGATAACTAGTTGATAGGAACGTGAAAAATACTTGTCGCACCGTTAAATATGATCGCGCGTTT] [-] EMBL BI506126 [CGTCAAGAACATTTTTATCGAATTTGACTAAAAAAAAAAAAGAACCCCGTTATTTTATGTATTACGTAGTAAAGATTTTTTTTTCGATTACACTATCTACTTACGAAATGTCTTCGTATCATTTCAAAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATATATATACATATATGTAATCGTCTATTTAATGATCTGTCTACGTCTTCAGGGTATTTTTATCGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAAATATTTCATTGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATGATAATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGGGTTA ] [+] EMBL BI516238 [ AAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATATATATACATATATGTAATCGTCTATTTAATGATCTGTCTACGTCTTCAGGGTATTTTTATCGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAAATATTTCATTGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATGATAATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGGGTTATGTTACGAGAGAATCGAACGGAAAAAAAAAAGAAAAAACGAAGAAAACGTTACGCAATCCTACGAGTGGGGCTGNNNGTGCGTGCGTGCGAGGAACCTGGTTGTATTATGTATAAATGTTGATAACTAGTTGATAGGAACGTGAAAAATACTTGTCGCACCGTTAAATATGATCGCGCGTTT] consensusID : consensus_913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [ATGCTCTACGGTAAGGACAGCGACCGTTTATATTAGTACTCTGTGTGTGTGTGTGTGGTAATATTTATATATATATATATATATATATATATATATATATATATATATATAATATATATTTCAACGTACAAACTATATTGTACCTTAATAACCTCTAAACGCAATGGGTACAAGGATAATATTTACACAGCCTAGAACCACTTGACCAGGTCCAGGATCACGCGATATACCATTTCTTTCAAAGAGGTTCAAAGATTCGACGACAGTCAAGTCCAACCTAACCTCCTTGTTCTAAGTTGAACGCGCGACAAACGCGCGATCATATTTAACGGTGCGACAAGTATTTTTCACGTTCCTATCAACTAGTTATCAACATTTATACATA] [+] EMBL BI511680 [ATGCTCTACGGTAAGGACAGCGACCGTTTATATTAGTACTCTGTGTGTGTGTGTGTGGTAATATTTATATATATATATATATATATATATATATATATATATATATATATAATATATATTTCAACGTACAAACTATATTGTACCTTAATAACCTCTAAACGCAATGGGTACAAGGATAATATTTACACAGCCTAGAACCACTTGACCAGGTCCAGGATCACGCGATATACCATTTCTTTCAAAGAGGTTCAAAGATTCGACGACAGTCAAGTCCAACCTAACCTCCTTGTTCTAAGTTGAACGCGCGACAAACGCGCGATCATATTTAACGGTGCGACAAGTATTTTTCACGTTCCTATCAACTAGTTATCAACATTTATACATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_913#0 CGTCAAGAACATTTTTATCGAATTTGACTAAAAAAAAAAAAGAACCCCGTTATTTTATGT 60 consensus_913#1 ------------------------------------------------------------ consensus_913#0 ATTACGTAGTAAAGATTTTTTTTTCGATTACACTATCTACTTACGAAATGTCTTCGTATC 120 consensus_913#1 ------------------------------------------------------------ consensus_913#0 ATTTCAAAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATA 180 consensus_913#1 ----------------------------------------------------ATGCTCTA 8 * * ** consensus_913#0 TATATACATATATGTAATCGTCTAT-TTAATGATCTGTCTACGTCTTCAGGGTATTTTTA 239 consensus_913#1 CG-GTAAGGACA-GCGACCGTTTATATTAGTACTCTGTGTGTGTGTGTGTGGTAAT---A 63 ** * * * * *** *** *** * ***** * ** * **** * * consensus_913#0 TCGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAA-ATATTTC 298 consensus_913#1 TTTATATATATATATATAT-ATATATATATATATATATATATATATATAATATATATTTC 122 * * *** ** * * * * * * ** * * * * * * ** * ******* consensus_913#0 ATTGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATG 358 consensus_913#1 AACGTACA--AACTATATTGTACCTTAATAACCTCTAAACGCAATGGGT-----ACAAGG 175 * * * * ** *** ** * * * * * * ** * * * * * consensus_913#0 ATAATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGG 418 consensus_913#1 ATAATATTTACACAGCCTAGAACCAC----TTGACCAGGTCCAGGATCACGCGATATACC 231 ***** * * ** ** * * * * * *** ** ** consensus_913#0 GTTATGTTACGAGAGAATCGAACGGAAAAAAAAAAGAAAAAACGAAGAAAACGTTACGCA 478 consensus_913#1 ATTTCTTTCAAAGAGGTTC-------------AAAGATTCGACGACAGTCAAGTC---CA 275 ** ** **** ** ***** **** * ** ** consensus_913#0 ATCCTACGAGTGGGGCTGNNNGTGCGTGCGTGCGAGGAACCTGGTTGTATTATGTATAAA 538 consensus_913#1 ACCTAACCTCCTTGTTCTAAGTTGAACGCGCGACAAACGCGCGATCATATT---TAACGG 332 * * ** * ** *** * * * * * **** ** consensus_913#0 TGTTGATAACTAGTTGATAGGAACGTGAAAAATACTTGTCGCACCGTTAAATATGATCGC 598 consensus_913#1 TGC-GACAAGTATTTTTCACGTTCCTATCAACTAGTTATCA-ACATTTATACATA----- 385 ** ** ** ** ** * * * * ** ** ** ** ** *** * ** consensus_913#0 GCGTTT 604 consensus_913#1 ------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |