|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence
[GAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGATTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATTTATAAACGATTATCGTTTAAGCAAACATTGGTGCAGTACACTTTGAATATTAGACGATGTGGAATTTAGGGGTGGAATGTAAAAATAATAGTGGCAGAAGNACGTAGCGTAATACCGGAAGTGGAGNNGAATTTTCTGGCGCCAGTTACACGTATGGATAAGTTGGCTTGCGTTGGTTT]
[+] EMBL BI503281 [GAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGATTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATTTATAAACGATTATCGTTTAAGCAAACATTGGTGCAGTACACTTTGAATATTAGACGATGTGGAATTTAGGGGTGGAATGTAAAAATAATAGTGGCAGAAGGACGTAGCGTAATACCGGAAGTGGAGGTGAATTTTCTGGCGCCAGTTACACGTATGGATAAGTTGGCTTGCGTTGGTTT]
[+] EMBL BI508408 [GAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGATTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATTTATAAACGATTATCGTTTAAGCAAACATTGGTGCAGTACACTTTGAATATTAGACGATGTGGAATTTAGGGGTGGAATGTAAAAATAATAGTGGCAGAAGNACGTAGCGTAATACCGGAAGTGGAGNNGAATTTTCTGGCGCCAGTTACACGTATGGATAAGTTGGCTTGCGT ]
consensusID : consensus_926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[ATCTTTTTCATTTGTTGGTAATATTCTCATTTTTTTTCTCTCTCGTAGAAACCATTCACAACGTGCGTTCCTATCAAACCGACATCTTATCAACGAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGGTTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGGGAAGACGAGGTGAACGTGTTGACTATAATAGAGAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATT]
[+] EMBL BI503992 [ATCTTTTTCATTTGTTGGTAATATTCTCATTTTTTTTCTCTCTCGTAGAAACCATTCACAACGTGCGTTCCTATCAAACCGACATCTTATCAACGAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGGTTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGGGAAGACGAGGTGAACGTGTTGACTATAATAGAGAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_926#0 ------------------------------------------------------------
consensus_926#1 ATCTTTTTCATTTGTTGGTAATATTCTCATTTTTTTTCTCTCTCGTAGAAACCATTCACA 60
consensus_926#0 ----------------------------------GAAAAAAATGCCTTACCGTGGTAAAT 26
consensus_926#1 ACGTGCGTTCCTATCAAACCGACATCTTATCAACGAAAAAAATGCCTTACCGTGGTAAAT 120
**************************
consensus_926#0 TACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACA 86
consensus_926#1 TACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACA 180
************************************************************
consensus_926#0 CGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGA 146
consensus_926#1 CGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGA 240
************************************************************
consensus_926#0 GATTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCC 206
consensus_926#1 GGTTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCC 300
* **********************************************************
consensus_926#0 AAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAA 266
consensus_926#1 AAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAA 360
************************************************************
consensus_926#0 AATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAG----------------- 309
consensus_926#1 AATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGGGAAGACGAGGTGAACG 420
*******************************************
consensus_926#0 -------------------AGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCT 350
consensus_926#1 TGTTGACTATAATAGAGAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCT 480
*****************************************
consensus_926#0 CGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACT 410
consensus_926#1 CGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACT 540
************************************************************
consensus_926#0 CTTCTTATTTATAAACGATTATCGTTTAAGCAAACATTGGTGCAGTACACTTTGAATATT 470
consensus_926#1 CTTCTTATT--------------------------------------------------- 549
*********
consensus_926#0 AGACGATGTGGAATTTAGGGGTGGAATGTAAAAATAATAGTGGCAGAAGNACGTAGCGTA 530
consensus_926#1 ------------------------------------------------------------
consensus_926#0 ATACCGGAAGTGGAGNNGAATTTTCTGGCGCCAGTTACACGTATGGATAAGTTGGCTTGC 590
consensus_926#1 ------------------------------------------------------------
consensus_926#0 GTTGGTTT 598
consensus_926#1 --------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |