cluster # 93

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Apis mellifera
cluster # 93 cluster # 93 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_93#0 length = 717 sequences # 2

consensus_93#1 length = 629 sequences # 5
consensus_93#2 length = 522 sequences # 1

consensusID : consensus_93#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 717
fasta sequence

                              [CGCGGGTAGACGTTAGTGCGTAGGATTTGTAGAGTATAATACAAAGAAAAATGGCGATGGCAACAACTCAAGTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTAGTTAATGTTTTGACTGCCTCTCCTGTAGAACAACTATGGCCGGTTAAGAGACGCTAGCAATTAAAATTATGTTCCTAACACCTTTCAATGCATCTTACATGATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACACGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTANNGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTGTTCAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCA]

[+] EMBL BE844274             [CGCGGGTAGACGTTAGTGCGTAGGATTTGTAGAGTATAATACAAAGAAAAATGGCGATGGCAACAACTCAAGTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTAGTTAATGTTTTGACTGCCTCTCCTGTAGAACAACTATGGCCGGTTAAGAGACGCTAGCAATTAAAATTATGTTCCTAACACCTTTCAATGCATCTTACATGATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACACGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTAGAGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTGTTCAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCA]
[+] EMBL BI515146             [                                                                                                                                                                                                                                                     ATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACATGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTANNGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACC                                                                                                    ]




>consensus_93#0
CGCGGGTAGACGTTAGTGCGTAGGATTTGTAGAGTATAATACAAAGAAAAATGGCGATGG
CAACAACTCAAGTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAG
GGAAAGTTGTACAGAACCAGTCTAGTTAATGTTTTGACTGCCTCTCCTGTAGAACAACTA
TGGCCGGTTAAGAGACGCTAGCAATTAAAATTATGTTCCTAACACCTTTCAATGCATCTT
ACATGATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGAT
CCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGT
CGCAGTGTTGAAGGGGTTTTATTGGTACACGAACATGGATTACCACATGTTCTCCTGCTC
CAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAG
GTANNGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAG
GAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAG
TATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTGTT
CAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCA

consensusID : consensus_93#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 629
fasta sequence

                              [GTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACATGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTAGAGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTGTTCAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCACCATTGTTTGAATTGTATGATAATTCACAAGGATATGGACCTATTATTTCCTCCCTACC]

[+] EMBL BI504402             [GTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACATGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTAGAGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTGTTCAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCACCATTGTTTGAATTGTATGATAATTCACAAGGATATGGACCTATTATTTCCT       ]
[+] EMBL BI504573             [GTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACATGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTAGAGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGNNNGTTTCTTGTTCAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCACCATTGTTTGAATTGTATGATAATTCACAAGGAT                         ]
[+] EMBL BI505340             [GTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACACGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTAGAGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTGTTCAACTGCAAGAGAAAGCTCTATTTGCTGTACCAAAAAATTATAAATT                                                                     ]
[+] EMBL BI508402             [                          AGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACATGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTAGAGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTGTTCAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCACCATTGTTTGAATTGTATGATAATTCACAAGGATATGGACCTATTATTTCCTCCCTACC]
[+] EMBL BI509422             [                          AGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTACATGAACATGTATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTAGAGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACCAAAC                                                                                                                                                 ]




>consensus_93#1
GTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTA
CAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTATATCCTTTGACAAACTATACA
TTTGGAACAAAAGAGCCACTCTTCGAGAAAGATCCATCTGTACCAGCAAGGTTTCAGCGT
ATGCGAGATGAATTCGATAAAATTGGAATGCGTCGCAGTGTTGAAGGGGTTTTATTGGTA
CATGAACATGGATTACCACATGTTCTCCTGCTCCAATTGGGAACAACTTTCTTCAAATTA
CCTGGTGGAGAACTAAATGCAGGAGAAGACGAGGTAGAGGGCCTGAAACGGCTCCTTACA
GAGACCTTTGGGCGTCAAGATGGTGTTAAACAGGAATGGGTAATAGAAGATACCATTGGA
AATTGGTGGAGACCTAATTTTGAACCACCTCAGTATCCTTATGTACCACCACATATTACC
AAACCGAAGGAACATAAAAGGTTGTTTCTTGTTCAACTGCAAGAGAAAGCTCTATTTGCA
GTACCAAAAAATTATAAATTAGTAGCTGCACCATTGTTTGAATTGTATGATAATTCACAA
GGATATGGACCTATTATTTCCTCCCTACC

consensusID : consensus_93#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [TAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTAACAACTATGGCCGGTTAAGAGACGCTAGCAATTAAAATTATGTTCCTAACACCTTTCAATGTATCTTACATGGTACAACCATGAGACGGCTGTTCATCTTTTCGTTAAGTACACATGGAAATTTTAAGCAATATTTCATTGAAATCATTATTATTAAAATTATTATTGATTAATGATTTAATAATTTATTTTTGCTTATATTTATCGTGAAACATAACCAATTATTTTAAAATGCCATGAAAATTTTCACGTAATAAAATGTTTTCTATAAATTATTTTCTCACAATCCATAATATATATACCTTCGTTGAATTAAAAATGAATTAAATATATGATTTTTTGCTTAAAATTTCCAAACATAGAATAAAATGATGTCTTTCGTGCTTTATTTGCACAAAATATAAGCTTCTGATTATAAAGAAGTT]

[+] EMBL BI512392             [TAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACAGAACCAGTCTGTAACTATCAACAGGACAGTTAACTTAACAACTATGGCCGGTTAAGAGACGCTAGCAATTAAAATTATGTTCCTAACACCTTTCAATGTATCTTACATGGTACAACCATGAGACGGCTGTTCATCTTTTCGTTAAGTACACATGGAAATTTTAAGCAATATTTCATTGAAATCATTATTATTAAAATTATTATTGATTAATGATTTAATAATTTATTTTTGCTTATATTTATCGTGAAACATAACCAATTATTTTAAAATGCCATGAAAATTTTCACGTAATAAAATGTTTTCTATAAATTATTTTCTCACAATCCATAATATATATACCTTCGTTGAATTAAAAATGAATTAAATATATGATTTTTTGCTTAAAATTTCCAAACATAGAATAAAATGATGTCTTTCGTGCTTTATTTGCACAAAATATAAGCTTCTGATTATAAAGAAGTT]




>consensus_93#2
TAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAGGGAAAGTTGTACA
GAACCAGTCTGTAACTATCAACAGGACAGTTAACTTAACAACTATGGCCGGTTAAGAGAC
GCTAGCAATTAAAATTATGTTCCTAACACCTTTCAATGTATCTTACATGGTACAACCATG
AGACGGCTGTTCATCTTTTCGTTAAGTACACATGGAAATTTTAAGCAATATTTCATTGAA
ATCATTATTATTAAAATTATTATTGATTAATGATTTAATAATTTATTTTTGCTTATATTT
ATCGTGAAACATAACCAATTATTTTAAAATGCCATGAAAATTTTCACGTAATAAAATGTT
TTCTATAAATTATTTTCTCACAATCCATAATATATATACCTTCGTTGAATTAAAAATGAA
TTAAATATATGATTTTTTGCTTAAAATTTCCAAACATAGAATAAAATGATGTCTTTCGTG
CTTTATTTGCACAAAATATAAGCTTCTGATTATAAAGAAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_93#0      CGCGGGTAGACGTTAGTGCGTAGGATTTGTAGAGTATAATACAAAGAAAAATGGCGATGG 60
consensus_93#1      ------------------------------------------------------------
consensus_93#2      ------------------------------------------------------------
                                                                                

consensus_93#0      CAACAACTCAAGTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAG 120
consensus_93#1      -----------GTTAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAG 49
consensus_93#2      -------------TAAAGGAAGCGGATGGCCGAGGAGAGCTAGTAACAGTTCGTTTGAAG 47
                                 ***********************************************

consensus_93#0      GGAAAGTTGTACAGAACCAGTCTAGTTAATGTTTTGACTGCCTCTCCTGTAGAACAACTA 180
consensus_93#1      GGAAAGTTGTACAGAACCAGTCTG----------TAACTATC----------AACA---- 85
consensus_93#2      GGAAAGTTGTACAGAACCAGTCTG----------TAACTATC----------AACA---- 83
                    ***********************           * ***  *          ****    

consensus_93#0      TGGCCGGTTAAGAGACGCTAGCAATTAAAATTATGTTCCTAACACCTTTCAATGCATCTT 240
consensus_93#1      -GGACAGTTAA----------------------------------CTT------------ 98
consensus_93#2      -GGACAGTTAA----------------------------------CTT------------ 96
                     ** * *****                                  ***            

consensus_93#0      ACATGATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGAT 300
consensus_93#1      -----ATATCCTTTGACAAACTATACATTTGGAACAAAAGAGCCACTCTTCGAGAAAGAT 153
consensus_93#2      ----AACAACTATGGCCGGTTAAGAGACGCTAGCAATTAAAATTATGTTCCTAACACCTT 152
                         * * *  * * *     * * *        *  * *   *   * * *  *   *

consensus_93#0      CCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAAT-TCGATAAAATTGGAATGCG 359
consensus_93#1      CCATCTGTACCAGCAAGGTTTCAGCGTATGCGAGATGAAT-TCGATAAAATTGGAATGCG 212
consensus_93#2      TCAATGTATCTTACATGGTACAACCATGAGACGGCTGTTCATCTTTTCGTTAAGTACACA 212
                     **      *   ** ***   * * *  *   * **    **  *    *  * *  * 

consensus_93#0      TCGCAGTGTTGAAGGG-GTTTTATTGGTACACGAACATGGATTACCACATGTTCTCCTGC 418
consensus_93#1      TCGCAGTGTTGAAGGG-GTTTTATTGGTACATGAACATGGATTACCACATGTTCTCCTGC 271
consensus_93#2      TGGAAATTTTAAGCAATATTTCATTGAAAT-----CATT-ATTATTAAAATTATTATTGA 266
                    * * * * ** *      *** ****  *      ***  ****  * *  *  *  ** 

consensus_93#0      TCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACG 478
consensus_93#1      TCCAATTGGGAACAACTTTCTTCAAATTACCTGGTGGAGAACTAAATGCAGGAGAAGACG 331
consensus_93#2      TTAATGATTTAATAATTTATTTTTGCTTAT----------ATTTATCGTGAAACATAACC 316
                    *  *      ** ** **  **    ***           * * *  *    * *  ** 

consensus_93#0      AGGTANNGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAAC 538
consensus_93#1      AGGTAGAGGGCCTGAAACGGCTCCTTACAGAGACCTTTGGGCGTCAAGATGGTGTTAAAC 391
consensus_93#2      AATTAT----TTTAAAATGCC-----ATGAAAATTTTCACGTAATAAAATGTTTTC---T 364
                    *  **       * *** * *     *   * *  **   *    ** *** * *     

consensus_93#0      AGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTC 598
consensus_93#1      AGGAATGGGTAATAGAAGATACCATTGGAAATTGGTGGAGACCTAATTTTGAACCACCTC 451
consensus_93#2      ATAAATTATTTTCTCACAAT-CCATAATATATATACCTTCGTTGAATTAAAAATGAATTA 423
                    *  ***   *     *  ** ****   * **            ****   **  *  * 

consensus_93#0      AGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTG 658
consensus_93#1      AGTATCCTTATGTACCACCACATATTACCAAACCGAAGGAACATAAAAGGTTGTTTCTTG 511
consensus_93#2      AATATA-TGATTTTTTGCTTAAAATTTCCAAAC--ATAGAATAAAATGATGTCTTTCGTG 480
                    * ***  * ** *    *   * *** ******  *  *** * **     * **** **

consensus_93#0      TTCAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCA- 717
consensus_93#1      TTCAACTGCAAGAGAAAGCTCTATTTGCAGTACCAAAAAATTATAAATTAGTAGCTGCAC 571
consensus_93#2      CTTTATTTGCACAAAATATAAGCTTCTGATTATAAAGAAGTT------------------ 522
                     *  * *   * * **       **   * **  ** ** **                  

consensus_93#0      ----------------------------------------------------------
consensus_93#1      CATTGTTTGAATTGTATGATAATTCACAAGGATATGGACCTATTATTTCCTCCCTACC 629
consensus_93#2      ----------------------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)