These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_95#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1066 fasta sequence [CGTTAAAAAGGTTAAGGTCAATTTATAATTGAGTGAAAAATAGAGAAAAAAGTGACGTGGTTACCGCAGATCGGATCCAACACTGCAGATGAGCGATGTTTAAGCTGTCAGCCAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGC----ATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTGTATAC--ATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATATATATATCGATATATTGTATAAATATTGTAAAAGATGTCGCCCTCGAGTCGCGCGCATGCGCGATGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCGGACGAACGTACTAAGAGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAGAGAAAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTATGATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAGGATATACAGAACAATTATAAATAGGTATAAATATATATATATATATAAAGATTATATATATATATGATACAAACATATACATGCATACATGTATGGAACGAGCGCGGTGAGCCCCCTTCTTATGTAGACCTTTAA] [+] EMBL BI514330 [CGTTAAAAAGGTTAAGGTCAATTTATAATTGAGTGAAAAATAGAGAAAAAAGTGACGTGGTTACCGCAGATCGGATCCAACACTGCAGATGAGCGATGTTTAAGCTGTCAGCCAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGC ATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTGTATAC ATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATAT ] [+] EMBL BI514765 [ GCAGATGAGCGATGTTTAAGCTGTCAGCCAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTGTATAC ATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATATATAT ] [+] EMBL BI516089 [ GCCAGCCTTAACAGTATTCGCATCTTTATACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGCAT ATATATATATATATATATATATGTACGGAGTACGAAAAGNNTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACAT ] [+] EMBL BI513014 [ GAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGC ATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTGTATACATATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATATATATATCGATATATTGTATAAATATTGTAAAAGATGTCGCCCTCGAGTCGCGCGCATGCGCGATGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCG ] [+] EMBL BI514951 [ TCTGAATTTAAGAAATTAACCATATATATATATATCGATATATTGTATAAATATTGTAAAAGATGTCGCCCTCGAGTCGCGCGCATGCGCGATGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCGGACGAACGTACTAAGAGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAGAGAAAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTATGATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAGGATATACAGAACAATTATAAATAGGTATAAATATATATATATATATAAAGATTATATATATATATGATACAAACATATACATGCATACATGTATGGAACGAG ] [-] EMBL BI515886 [ TGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATNNTTGGACGCTTCGCCGGACGAACGTANNAAGAGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAGAGAAAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTATGATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAGGATATACAGAACAATTATAAATAGGTATAAATATATATATATATATAAAGATTATATATATATATGATACAAACATATACATGCATACATGTATGGAACG ] [+] EMBL BI516219 [ GTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCGGACGAACGTACTAAGAGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAGAGAGAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTATGATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAAGATATACAGAACAATTATAAATAGGTATAA ATATATATATATATAAAGATTATATATATATATGATACAAACATATACATGCATACATGTATGGAACGAGCGCGGTGAGCCCCCTTCTTATGTAGACCTTTAA] consensusID : consensus_95#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [CAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTNNNTACATATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATAT] [+] EMBL BI513246 [CAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTNNNTACATATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_95#0 CGTTAAAAAGGTTAAGGTCAATTTATAATTGAGTGAAAAATAGAGAAAAAAGTGACGTGG 60 consensus_95#1 ------------------------------------------------------------ consensus_95#0 TTACCGCAGATCGGATCCAACACTGCAGATGAGCGATGTTTAAGCTGTCAGCCAGCCTTA 120 consensus_95#1 ----------------------------------------------------CAGCCTTA 8 ******** consensus_95#0 ACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGA 180 consensus_95#1 ACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGA 68 ************************************************************ consensus_95#0 GCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAA 240 consensus_95#1 GCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAA 128 ************************************************************ consensus_95#0 ATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAG 300 consensus_95#1 ATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAG 188 ************************************************************ consensus_95#0 AGCGAGCGAGCGA----------------------AAGAGAGAGAGAGAAAAGCGAGCGA 338 consensus_95#1 AGCGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGA 248 ************* ************************* consensus_95#0 ACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATGTACGGAGTACGAA 398 consensus_95#1 ACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATGTACGGAGTACGAA 308 ************************************************************ consensus_95#0 AAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTA 458 consensus_95#1 AAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTA 368 ************************************************************ consensus_95#0 CGTATTGTATACATATATATATATAT--GTAAACTTTTTTCTGAATTTAAGAAATTAACC 516 consensus_95#1 CGTATTNNNTACATATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACC 428 ****** ***************** ******************************** consensus_95#0 ATATATATATATATCGATATATTGTATAAATATTGTAAAAGATGTCGCCCTCGAGTCGCG 576 consensus_95#1 ATATATAT---------------------------------------------------- 436 ******** consensus_95#0 CGCATGCGCGATGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCT 636 consensus_95#1 ------------------------------------------------------------ consensus_95#0 CCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGA 696 consensus_95#1 ------------------------------------------------------------ consensus_95#0 AAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCGGACGAACGTACTAAG 756 consensus_95#1 ------------------------------------------------------------ consensus_95#0 AGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAG 816 consensus_95#1 ------------------------------------------------------------ consensus_95#0 AGAAAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTAT 876 consensus_95#1 ------------------------------------------------------------ consensus_95#0 GATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAGGATAT 936 consensus_95#1 ------------------------------------------------------------ consensus_95#0 ACAGAACAATTATAAATAGGTATAAATATATATATATATATAAAGATTATATATATATAT 996 consensus_95#1 ------------------------------------------------------------ consensus_95#0 GATACAAACATATACATGCATACATGTATGGAACGAGCGCGGTGAGCCCCCTTCTTATGT 1056 consensus_95#1 ------------------------------------------------------------ consensus_95#0 AGACCTTTAA 1066 consensus_95#1 ---------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |