These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence [CTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGAATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGCGAATTAATATTCGATTTTTAAATTAAGGTCTAAAAAATTTATTTTTTAACTGATTTCCAGACTTTTTGTTTTTTTTGTAATCCCTCTCGCGCAGGGAGAAATGGACTGATTAGACTGTTTTTTTTTTTTTTTTCGATTGGTTTAAACTTTTTCTTGATCATGTGATATTGTATTACCAAAGAGCATCGGGAAATTGTAAAAAATTTCTCGGATTTTCGAACGGTATCCACCTTGAACGATGATATGAATTCAATGATAAGACGCAATTTTTATCGTTTCCCGCAATTAACTGTGTTTCGCTGTACTTTTTACAGACAGACAGGACGCGAAACCGTTTTGAAAAACCGTTCCATTTATGATATGCATTTATAATTTAGTCGTTTC] [+] EMBL BI510362 [CTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGAATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGCGAATTAATATTCGATTTTTAAATTAAGGTCTAAAAAATTTATTTTTTAACTGATTTCCAGACTTTTTGTTTTTTTTGTAATCCCTCTCGCGCAGGGAGAAATGGACTGATTAGACTGTTTTTTTTTTTTTTTTCGATTGGTTTAAACTTTTTCTTGATCATGTGATATTGTATTACCAAAGAGCATCGGGAAATTGTAAAAAATTTCTCGGATTTTCGAACGGTATCCACCTTGAACGATGATATGAATTCAATGATAAGACGCAATTTTTATCGTTTCCCGCAATTAACTGTGTTTCGCTGTACTTTTTACAGACAGACAGGACGCGAAACCGTTTTGAAAAACCGTTCCATTTATGATATGCATTTATAATTTAGTCGTTTC] [+] EMBL BI511299 [ GCCAATCACCGGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGAATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGCGAATTAATATTCGATTTTTAAATTAAGGTCTAAAAAATTTATTTTTTAACTGATTTCCAGACTTTTTGTTTTTTTTGTAATCCCTCTCGCGCAGGGAG ] consensusID : consensus_991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [AACCGGATCAATTGTGAGGGAAAGTTCGTGGAACTTGGCGCGTGCCGCGACAACGCGTCGAATTTTAAAAAAAAGCCATTGAAAAACGGCTTAATGTCCATTCGGTTCGACGAACTTTTCGCGGCTATCGCACTATCGATCACTACCGTAGATTCTAGCTTCCGTTTGAAACCGTCATTGAACCGTTGAACTTCATACGCAAAAGGAAAAAAAGAGGAAGAAAAAAAAAAAAAAGGAAAAAAAGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAGGAAAAAATGGGGAAAATGGGGTTTGTTGNNTAGAGGTCTTTGTTATATACGTTNNNGTTGTCACATTATCTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGTGCTCGAG] [+] EMBL BI510568 [AACCGGATCAATTGTGAGGGAAAGTTCGTGGAACTTGGCGCGTGCCGCGACAACGCGTCGAATTTTAAAAAAAAGCCATTGAAAAACGGCTTAATGTCCATTCGGTTCGACGAACTTTTCGCGGCTATCGCACTATCGATCACTACCGTAGATTCTAGCTTCCGTTTGAAACCGTCATTGAACCGTTGAACTTCATACGCAAAAGGAAAAAAAGAGGAAGAAAAAAAAAAAAAAGGAAAAAAAGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAGGAAAAAATGGGGAAAATGGGGTTTGTTGNNTAGAGGTCTTTGTTATATACGTTNNNGTTGTCACATTATCTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGTGCTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_991#0 CTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACC 60 consensus_991#1 ------------------------------------------------------------ consensus_991#0 GGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGA 120 consensus_991#1 ------------------------------------------------------AACCGG 6 * ** consensus_991#0 ATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGC-GAATTAATAT-TCGATT 178 consensus_991#1 ATCAATT---GTGAGGGAAAGTTCGTGGAACTTGGCGCGTGCCGCGACAACGCGTCGAAT 63 ** * * * ** ** ** * ** ** ** * ** **** * consensus_991#0 TTTAAATTAAGGTC--TAAAAAAT---TTATTTTTTAACTGATTTC-CAGACTTTTTGTT 232 consensus_991#1 TTTAAAAAAAAGCCATTGAAAAACGGCTTAATGTCCATTCGGTTCGACGAACTTTTCGCG 123 ****** ** * * * ***** *** * * * * ** * ****** * consensus_991#0 TTTTTTGTAATCCCTCTCGCGCAGGGAGAAATGGACTGATTAGACTGTTTTTTTTTTTTT 292 consensus_991#1 GCTATCGCACTATCGATCACTACCG------TAGATT--CTAGCTTCCGTTTGAAACCGT 175 * * * * * * ** * * * ** * *** * *** * consensus_991#0 TTTCGATTGGTTTAAACTTTTTCTTGATC---ATGTGATATTGTATTACCAAAGAGCATC 349 consensus_991#1 CATTGAACCGTTGAACTTCATACGCAAAAGGAAAAAAAGAGGAAGAAAAAAAAAAAAAAG 235 * ** *** ** * * * * * * * * *** * * consensus_991#0 GGGAAATTGTAAAAAATTTCTCGGATTTTCGAACGGTATCCACCTTGAACGATGATATGA 409 consensus_991#1 GAAAAAAAGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAG--GAAAAAATGGGGAAA 293 * *** ******** * *** * * * ** *** * consensus_991#0 ATTCAAT--GATAAGACGCAATTTTTATCGTTTCCCGCAATTAACTGTGTTTCGCTGTAC 467 consensus_991#1 ATGGGGTTTGTTGNNTAGAGGTCTTTGTTATATAC-GTTNNNGTTGTCACATTATCTTTC 352 ** * * * * * *** * * * * * * * * consensus_991#0 TTTTTACAGAC-AGACAGGACGCGAAACCGT--TTTGAAAAACCGTTCCATTTATGATAT 524 consensus_991#1 GTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCG 412 ** * *** ** * *** * * ** ** **** * ** * * consensus_991#0 GCATTTATAATTTAGTCGTTTC 546 consensus_991#1 GCACACGTGCTCGAG------- 427 *** * * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |