These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [ATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTTTATATTTTAACAAAAATCACATTTGAATGCGGTTTTTATCATTATTTTTTAAATTAGAAAAGAAAAATTGAGAAGTGCATCGAGAAAATTAACATTTTTTTCAGGAATAGTATAGTTTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGGTTCACCAAATACTTTATTATCTGCAGACCTTCCGCATCATCGGGTCAATACGATCGAGATCTTATCATCTAATGCGTGACGCGTCGACATTTAACCGTGGTCGNNNTTCAGTAATCGGTTACGTATATTTTCAGAATATACCTCTGTTATGTGTTTATACTGATTATTTAATTTTTATTTAATTTTTTTTAAACAATTTTGAAAATGATTAAATAATGGAAATGATAACAATTAATCAAATATTGANATAAAAGTTTCTTAAATTGGTT] [+] EMBL BI507762 [ATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTTTATATTTTAACAAAAATCACATTTGAATGCGGTTTTTATCATTATTTTTTAAATTAGAAAAGAAAAATTGAGAAGTGCATCGAGAAAATTAACATTTTTTTCAGGAATAGTATAGTTTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGGTTCACCAAATACTTTATTATCTGCAGACCTTCCGCATCATCGGGTCAATACGATCGAGATCTTATCATCTAATGCGTGACGCGTCGACATTTAACCGTGGTCGNNNTTCAGTAATCGGTTACGTATATTTTCAGAATATACCTCTGTTATGTGTTTATACTGATTATTTAATTTTTATTTAATTTTTTTTAAACAATTTTGAAAATGATTAAATAATGGAAATGATAACAATTAATCAAATATTGANATAAAAGTTTCTTAAATTGGTT] consensusID : consensus_997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [AATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTTTATATTTTTAACAAAAATCACATTTGAATGCGGAATAGTATAGTTTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGATAAATTTATACTGAAGGGACCCCGGTTAGCGGGGGTTAACATCATCGGGACGGCAGATGTCAGAATGCCAGAGCAGAGCAACGATTACCGCGTGGTGGTGTTTGGAGCGGGTGGTGTTGGCAAGAGTTCTCTCGTATTGCGTTTCGTGAAAGGAACTTTTCGTGAATCCTATATACCTACTATCGAGGATACATATAGACAGGTGATAAGCTGCAATAAAAATATATGCACGCTTCAAATTACCGACACAGCGGGGTCTCATCAGTTTCC] [+] EMBL BI512636 [AATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTTTATATTTTTAACAAAAATCACATTTGAATGCGGAATAGTATAGTTTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGATAAATTTATACTGAAGGGACCCCGGTTAGCGGGGGTTAACATCATCGGGACGGCAGATGTCAGAATGCCAGAGCAGAGCAACGATTACCGCGTGGTGGTGTTTGGAGCGGGTGGTGTTGGCAAGAGTTCTCTCGTATTGCGTTTCGTGAAAGGAACTTTTCGTGAATCCTATATACCTACTATCGAGGATACATATAGACAGGTGATAAGCTGCAATAAAAATATATGCACGCTTCAAATTACCGACACAGCGGGGTCTCATCAGTTTCC] consensusID : consensus_997#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [TTAACACCAAATTATTGATTTACATTCTTTTTTTTTATCTTTATAATTTGTTAATATAATATTTAACTTCTATAATGAACTATTATTATCATTTTCTTAATGACATTGCGATGTTTGATCGCTGAAAAAAAATCGCCGACTTGATATAAATGCCACTTCATAATCCTCTTATGACCCGTAATCATCCCTCTACATGTGTATATATTCAACAAGTGATGTTTGAGACTCGAGACTCTTGTCATCGTTATCAAACAAGATTTTCACTAGAACATTCACATAAAGATCAATGATTATAATATTAAAACCAATTTAAGAAACTTTTATATCAATATTTGATTAATTGTTATCATTTCCATTATTTAATCATTTTCAAAATTGTTTAAAAAAAAA] [+] EMBL BI504960 [TTAACACCAAATTATTGATTTACATTCTTTTTTTTTATCTTTATAATTTGTTAATATAATATTTAACTTCTATAATGAACTATTATTATCATTTTCTTAATGACATTGCGATGTTTGATCGCTGAAAAAAAATCGCCGACTTGATATAAATGCCACTTCATAATCCTCTTATGACCCGTAATCATCCCTCTACATGTGTATATATTCAACAAGTGATGTTTGAGACTCGAGACTCTTGTCATCGTTATCAAACAAGATTTTCACTAGAACATTCACATAAAGATCAATGATTATAATATTAAAACCAATTTAAGAAACTTTTATATCAATATTTGATTAATTGTTATCATTTCCATTATTTAATCATTTTCAAAATTGTTTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_997#0 -ATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTT 59 consensus_997#1 AATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTT 60 consensus_997#2 --------------------------TTAACACCAAATTATTGATTTACATTCT-TTTTT 33 ** **** *** * * * * * ** ** consensus_997#0 ATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCT 119 consensus_997#1 ATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCT 120 consensus_997#2 TTTATCTTTATAATTTG-----TTAATATAATATTTAACTTCTATAATGAACTATTATTA 88 ***** * ** ** ** * * * * * *** *** * * consensus_997#0 TTATATTTT-AACAAAAATC--ACATTTGAATGCGGTTTTTATCATTATTTTTTAAATTA 176 consensus_997#1 TTATATTTTTAACAAAAATC--ACATTTGAATGCGG------------------------ 154 consensus_997#2 TCATTTTCTTAATGACATTGCGATGTTTGATCGCTG------------------------ 124 * ** ** * ** * * * * ***** ** * consensus_997#0 GAAAAGAAAAATTGAGAAGTGCATCGAGAAAATTAACATTTTTTTCAGGAATAGTATAGT 236 consensus_997#1 -------------------------------------------------AATAGTATAGT 165 consensus_997#2 ------------------------------------------------AAAAAAAATCGC 136 ** * ** * consensus_997#0 TTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATAC 296 consensus_997#1 TTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATAC 225 consensus_997#2 CGACTTGATATAAATGCCACTTCATAATCCTCTTATGACCCGTAAT--CATCC-CTCTAC 193 ** ** ** * * **** * * * * * * * ** ** *** consensus_997#0 AAGGTTCACCAAATACTTTATTATCTGCAGACCTTCCGCATCATCGGGTCAATACGATCG 356 consensus_997#1 AAGAT-----AAAT---TTATACTGAAGGGACCCCGGTTAGCGG-GGGTTAACATCATCG 276 consensus_997#2 ATGTGT------ATA--TATTCAACAAGTGATGTTTGAGACTCG-AGACTCTTGTCATCG 244 * * ** * * ** * * **** consensus_997#0 AGAT--CTTATCATCTAATGCGTGA-CGCGTCGACATTTAAC-CGTGGTCGNNNTTCAGT 412 consensus_997#1 GGACGGCAGATGTCAGAATGCCAGAGCAGAGCAACGATTACCGCGTGGTGGTGTTT--GG 334 consensus_997#2 TTATCAAACAAGATTTT-CACTAGAACATTCACATAAAGATC-AATGATTATAATATTAA 302 * * * ** * * * * ** * * consensus_997#0 AATCGGTTACGTATATTTTCAGAATATACCTCTGTTATGTGT--TTATACTGATTATT-- 468 consensus_997#1 AGCGGGTGGTGT---TGGCAAGAGTTCTCTCGTATTGCGTTTCGTGAAAGGAACTTTTCG 391 consensus_997#2 AACCAATTTAAGAAACTTTTATATCAATATTTGATTAATTGTTATCATTTCCATTATT-- 360 * * * * ** * * * * * * ** consensus_997#0 TAATTTTTATTTAATTTTTTTTAAACAATTTTGAAAATGATTAAATAATGGAAATGATAA 528 consensus_997#1 TGAATCCTATATACCTACTATCGAGGATACATATAGACAGGTGATAAGCTGCAATAAAAA 451 consensus_997#2 TAATCATTTTCAAAATTGTTTAAAAAAAAA------------------------------ 390 * * * * * * * * * * consensus_997#0 CAATTAA-----TCAAAT-ATTGANATAAAAGTTTCTTAAATTGGTT--- 569 consensus_997#1 TATATGCACGCTTCAAATTACCGACACAGCGGGGTCTC--ATCAGTTTCC 499 consensus_997#2 -------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |