These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1669 fasta sequence [CCCGCCCACCGACGGCCGACGGCCGACGGCGAACCCGCTCCTCCGCCTCCGCCGCTGCCTGAGCCAGCCAGCCATTGGAGTGGAGGATCCGGCCTCTGCTCCCCTCGCAAACCCCCGCCACTCCTCACCCGCACCCGATCCGATCCAGCCCCGCATCCCCCGATCCCTCCCACGGGACCAAGATTCGGATCCG-CCTCGCCGTGATGGATCCCGACGAGAACCCCACGCCGCCGCCGCCATACCAGGAAGCGGAGGCTGCGGTGCCGGTCGACGAGCAGCCTCCGCCCCCCGTAGAGGAAGAGCAGGCGGAGGCGGCACGCCAGGAGTCAGCTGCGCCGGTTGAACAAGATGCGGCGGCGGCAGAGGGAGGAGGAGGCGATCGCGCCGCGGGCGGGGAGCGGAGCCGCGAGGAGCTGGAGCGGGTGGTGATGGAGCTCGGCTTCCAGAACGACTACCTCAAGTCCCAGATCGCGGCCGCCGAGGGTGGGAGTGGGGCGGCGGAGTCGGAGCTCGTGAAGGGGTTGAAGGAGCAGGTGGAGAGGCTGAGGAAGGAGGTGGAGGAGCACAAGCAGACGCAGAAGGCCACCGAGGCCGCCCTCGAGCACGTCAATGTCGCCTACGCCGAGGCGGACGCCAAGGTCCAGGACCTCACCGCCAAGCTCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA] [+] EMBL AK066964 [CCCGCCCACCGACGGCCGACGGCCGACGGCGAACCCGCTCCTCCGCCTCCGCCGCTGCCTGAGCCAGCCAGCCATTGGAGTGGAGGATCCGGCCTCTGCTCCCCTCGCAAACCCCCGCCACTCCTCACCCGCACCCGATCCGATCCAGCCCCGCATCCCCCGATCCCTCCCACGGGACCAAGATTCGGATCCG CCTCGCCGTGATGGATCCCGACGAGAACCCCACGCCGCCGCCGCCATACCAGGAAGCGGAGGCTGCGGTGCCGGTCGACGAGCAGCCTCCGCCCCCCGTAGAGGAAGAGCAGGCGGAGGCGGCACGCCAGGAGTCAGCTGCGCCGGTTGAACAAGATGCGGCGGCGGCAGAGGGAGGAGGAGGCGATCGCGCCGCGGGCGGGGAGCGGAGCCGCGAGGAGCTGGAGCGGGTGGTGATGGAGCTCGGCTTCCAGAACGACTACCTCAAGTCCCAGATCGCGGCCGCCGAGGGTGGGAGTGGGGCGGCGGAGTCGGAGCTCGTGAAGGGGTTGAAGGAGCAGGTGGAGAGGCTGAGGAAGGAGGTGGAGGAGCACAAGCAGACGCAGAAGGCCACCGAGGCCGCCCTCGAGCACGTCAATGTCGCCTACGCCGAGGCGGACGCCAAGGTCCAGGACCTCACCGCCAAGCTCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGGGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA] [+] EMBL CB627799 [ acccGATCCGATCTCGCCGTGATGGATCCCGACGAGAACCCCACGCCGCCGCCGCCATACCAGGAAGCGGAGGCTGCGGTGCCGGTCGACGAGCAGCCTCCGCCCCCCGTAGAGGAAGAGCAGGCGGAGGCGGCACGCCAGGAGTCAGCTGCGCCGGTTGAACAAGATGCGGCGGCGGCAGAGGGAGGAGGAGGCGATCGCGCCGCGGGCGGGGAGCGGAGCCGCGAGGAGCTGGAGCGGGTGGTGATGGAGCTCGGCTTCCAGAACGACTACCTCAAGTCCCAGATCGCGGCCGCCGAGGGTGGGAGTGGGGCGGCGGAGTCGGAGCTCGTGAAGGGGTTGAAGGAGCAGGT ] [+] EMBL CB668933 [ ctttGAAGGAGGTGGAGGAGCACAAGCAGACGCAGAAGGCCACCGAGGCCGCCCTCGAGCACGTCAATGTCGCCTACGCCGAGGCGGACGCCAAGGTCCAGGACCTCACCGCCAAGCTCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAA ] [+] EMBL CB000199 [ GACGCAGAAGGCCACCGAGGCCGCCCTCGAGCCCTTCAAAGTCGCCTACGCCGAGGCGGACGCCAAGGGCCAGGACCTCACCGCCAAGCTCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACC ] [+] EMBL AY224523 [ GAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA] consensusID : consensus_10087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence [TATCTTGAAGTGATGCTTGGGGGCACAGCTAACTGACGTTTCTGCGGAGAGGACAATAGCATCTGAAACGATCCAATCTCTTCACATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCCAATTAAAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA] [+] EMBL CB683260 [TATCTTGAAGTGATGCTTGGGGGCACAGCTAACTGACGTTTCTGCGGAGAGGACAATAGCATCTGAAACGATCCAATCTCTTCACATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCCAATTAAAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA] [+] EMBL OSC105481 [ ATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGANCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10087#0 CCCGCCCACCGACGGCCGACGGCCGACGGCGAACCCGCTCCTCCGCCTCCGCCGCTGCCT 60 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 GAGCCAGCCAGCCATTGGAGTGGAGGATCCGGCCTCTGCTCCCCTCGCAAACCCCCGCCA 120 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 CTCCTCACCCGCACCCGATCCGATCCAGCCCCGCATCCCCCGATCCCTCCCACGGGACCA 180 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 AGATTCGGATCCGCCTCGCCGTGATGGATCCCGACGAGAACCCCACGCCGCCGCCGCCAT 240 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 ACCAGGAAGCGGAGGCTGCGGTGCCGGTCGACGAGCAGCCTCCGCCCCCCGTAGAGGAAG 300 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 AGCAGGCGGAGGCGGCACGCCAGGAGTCAGCTGCGCCGGTTGAACAAGATGCGGCGGCGG 360 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 CAGAGGGAGGAGGAGGCGATCGCGCCGCGGGCGGGGAGCGGAGCCGCGAGGAGCTGGAGC 420 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 GGGTGGTGATGGAGCTCGGCTTCCAGAACGACTACCTCAAGTCCCAGATCGCGGCCGCCG 480 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 AGGGTGGGAGTGGGGCGGCGGAGTCGGAGCTCGTGAAGGGGTTGAAGGAGCAGGTGGAGA 540 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 GGCTGAGGAAGGAGGTGGAGGAGCACAAGCAGACGCAGAAGGCCACCGAGGCCGCCCTCG 600 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 AGCACGTCAATGTCGCCTACGCCGAGGCGGACGCCAAGGTCCAGGACCTCACCGCCAAGC 660 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 TCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTG 720 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 AGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATAC 780 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 AGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGG 840 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 CTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTG 900 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 AGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAA 960 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 GAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGT 1020 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 TGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAAT 1080 consensus_10087#1 ------------------------------------------------------------ consensus_10087#0 CTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCA-GAAGCAA 1139 consensus_10087#1 -----------------------------------------------TATCTTGAAGTGA 13 *** **** * consensus_10087#0 TTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAA 1199 consensus_10087#1 T------GCTTGGGGGCACAGCTAACTGACGTTTCTGCGGAGAGGACAATAGCATCTGAA 67 * ****** *************** ******************* ********** consensus_10087#0 ACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAA 1259 consensus_10087#1 ACGATCCAATCTCTTCACATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAA 127 ***************** ****************************************** consensus_10087#0 GCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAG 1319 consensus_10087#1 GCAGCTTCTACTGGGGAAGCTGCTCCAATTAAAGCTGCCATGGAGGAGCTTAAAGGCGAG 187 ************************* ***** **************************** consensus_10087#0 CTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAA 1379 consensus_10087#1 CTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAA 247 ************************************************************ consensus_10087#0 TCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCT 1439 consensus_10087#1 TCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCT 307 ************************************************************ consensus_10087#0 ACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACC 1499 consensus_10087#1 ACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACC 367 ************************************************************ consensus_10087#0 AAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCT 1559 consensus_10087#1 AAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCT 427 ************************************************************ consensus_10087#0 GCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCT 1619 consensus_10087#1 GCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCT 487 ************************************************************ consensus_10087#0 AAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA 1669 consensus_10087#1 AAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA 537 ************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||