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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 717 fasta sequence
[TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCA-CTGA-TGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT-CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG-ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSR00171A [TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGNGTCGCGCCACCGNCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCANGGCGCGCA NTGATTGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT NACCGCCGTGCTCTGNTCCGCCGACTTCCTCCACCACTTCAAGCCNGTNGCGTCCTAGCAAC ]
[+] EMBL OSC9621 [ CGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTAACCCCCCCCCCCCCCTCCTTNTTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCANTTGA TGCTGGATCTNGCGGTGGCCGGGCTNTCGCTGGTGGTCGCGNTCGGCCTCTTNGCCGTCGTAAACCG ]
[+] EMBL CB678409 [ GGTGGCCTGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGA TGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGAACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTAT ]
[+] EMBL C29000 [ GCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCA CTGA TNCTGGATCTNGCGGTNGCCGGGCTGTCGCTNGTGGTCGCGCTCGGCCTCTNCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCNCCGCCACAACCCCCCTCGGAATGAGATTNTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGNATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTNTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTNATGTTTACTNGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATATNCCATTTAG ]
[+] EMBL AU101591 [ CTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[CCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTGCTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGGCACTTTTAGGGTTTTACATCTCATATACCTTATGGACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCCNNNAAANNNAANANCNNCACCCCTTGAAC]
[+] EMBL CA756528 [CCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTGCTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGGCACTTTTAGGGTTTTACATCTCATATACCTTATGGACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCCNNNAAANNNAANANCNNCACCCCTTGAAC]
consensusID : consensus_10239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGACCAGGAGAACATGTCTTTTGTTTGCTTTAGTACGTGTGTGCAGATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTGTGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAGTTGCATTATAAAGGTGAGTCTCATTCCTGAGAAAAAAAAAAA]
[+] EMBL AU101866 [TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGACCAGGAGAACATGTCTTTTGTTTGCTTTAGTACGTGTGTGCAGATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTGTGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAGTTGCATTATAAAGGTGAGTCTCATTCCTGAGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10239#0 TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCC 60
consensus_10239#1 ------------------------------------------------------------
consensus_10239#2 ------------------------------------------------------------
consensus_10239#0 ACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACG 120
consensus_10239#1 -----------------------------CCCCCTCCTTCCTCTCTCTCCGCTGCCTACG 31
consensus_10239#2 ------------------------------------------------------------
consensus_10239#0 ATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTG 180
consensus_10239#1 ATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGG---CCCGATGGCGTTG 88
consensus_10239#2 ------------------------------------------------------------
consensus_10239#0 GGGGCGGTGTTCCACGGCGCGCA-CTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTG 239
consensus_10239#1 GGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTG 148
consensus_10239#2 ------------------------------------------------------------
consensus_10239#0 GTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTC 299
consensus_10239#1 GTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTC 208
consensus_10239#2 ------------------------------------------------------------
consensus_10239#0 CACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCC 359
consensus_10239#1 CACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCC 268
consensus_10239#2 ------------------------------------------------------------
consensus_10239#0 CCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 419
consensus_10239#1 CCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 328
consensus_10239#2 --------------TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 46
**********************************************
consensus_10239#0 GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 479
consensus_10239#1 GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 388
consensus_10239#2 GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 106
************************************************************
consensus_10239#0 TCACACGTATCAGGTGATAGTTCGATGCA-CTTGTAGTTGTATGAATGTTATGTTTACTT 538
consensus_10239#1 TCACACGTATCAGGTGATAGTTCGATGCA-CTTGTAGTTGTATGAATGTTATGTTTACTT 447
consensus_10239#2 TCACACGTATCAGG-ACCAGGAGAACATGTCTTTTGTTTGCTTTAGTAC-GTGTGTGCAG 164
************** ** * *** * *** * * * *** * *
consensus_10239#0 GTACTATTCTGCCGATATTA--GCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTG 596
consensus_10239#1 GTGCTATTCTGCCGATATTA--GCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTG 505
consensus_10239#2 ATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTG 224
* * ** * * * * ** * * * * ** * **** * ** **
consensus_10239#0 GCAACTTTTAGGGTTTTACATCTCATATACCTTATG-TACATTGTTTTATTCTTATATGG 655
consensus_10239#1 GGCACTTTTAGGGTTTTACATCTCATATACCTTATG-GACATTGTTTTATTCTTATATGG 564
consensus_10239#2 --TGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAG 282
** * ** * * * * * * ** * ** **** * * *
consensus_10239#0 AAGTATGG-AAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAA 714
consensus_10239#1 AAGTATGG-AAGGTTCAGCTCCTTGAGGCCNNNAA----ANNNAANANCNNCACCCCTTG 619
consensus_10239#2 TTGCATTATAAAGGTGAGTCTCATT---CCTGAGA----AAAAAAAAAA----------- 324
* ** ** * * ** * * * * * ** *
consensus_10239#0 AAA 717
consensus_10239#1 AAC 622
consensus_10239#2 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||