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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1054 fasta sequence
[CCCCACGATAATTACGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTCCCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGC-----GATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC]
[+] EMBL AK071777 [CCCCACGATAATTACGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTCCCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGC GATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC]
[+] EMBL AK059301 [ CTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGGTGAGATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC]
[+] EMBL CB669661 [ CTCTAGTCCCTTTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGC GATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGGTGCCTGCTTCTCTCATGGTGA TAACGACATTGCTGCC ]
[+] EMBL CB675472 [ CCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGC GATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAAGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGC ]
[+] EMBL CB678249 [ caccctGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATA ]
[+] EMBL CB667578 [ GATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC]
consensusID : consensus_10335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[CGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTCCCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTTAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTTGAATAGTTTAATATGGGGGTCCCCCCCCTATTTATTNTGGGGGCCAGGGGGGGGGGGGGTTATTCCAAAAAATTTTTGGGGGGCGAAAAGAATTTTTTTTTTCCACACCCCAAAAAAAAACGGGGGAGGAGAAAAAAACAAAAAACCCCCNTCTTTTCCCGCCCAAAAGAGAAGTGCCCTCTTTTTTT]
[+] EMBL CA754657 [CGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTCCCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCTCTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTTAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTTGAATAGTTTAATATGGGGGTCCCCCCCCTATTTATTNTGGGGGCCAGGGGGGGGGGGGGTTATTCCAAAAAATTTTTGGGGGGCGAAAAGAATTTTTTTTTTCCACACCCCAAAAAAAAACGGGGGAGGAGAAAAAAACAAAAAACCCCCNTCTTTTCCCGCCCAAAAGAGAAGTGCCCTCTTTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10335#0 CCCCACGATAATTACGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTC 60
consensus_10335#1 --------------CGAAGCAGAGCCAGCCACCACGCACAGCTCCGCAAGTCCACAACTC 46
**********************************************
consensus_10335#0 CCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCT 120
consensus_10335#1 CCTCTCCCTCTCTAGTCTCTCTCTCCTCCCCCTTCTCGAAGCACGCTGCCGCCGCCTCCT 106
************************************************************
consensus_10335#0 CTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGG 180
consensus_10335#1 CTCCCCGCGCCGCGCGCCTCGCCGAGTTAGGGTTCCGGCGAGCTCGGGGCCTTTCTCCGG 166
************************************************************
consensus_10335#0 CGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGATCAAATAGCAGCGATGGAAAG 240
consensus_10335#1 CGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGATCAAATAGCAGCGATGGAAAG 226
************************************************************
consensus_10335#0 GGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACG 300
consensus_10335#1 GGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACG 286
************************************************************
consensus_10335#0 TCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGA 360
consensus_10335#1 TCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGA 346
************************************************************
consensus_10335#0 TCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGG 420
consensus_10335#1 TCAGAATAAGTACAAGTTAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGG 406
***************** ******************************************
consensus_10335#0 CTTTGTGTT--GATAGTTTA---TATGGGTCACCTCTATATCT-------GGGCCATGGT 468
consensus_10335#1 CTTTGTGTTTGAATAGTTTAATATGGGGGTCCCCCCCCTATTTATTNTGGGGGCCAGGGG 466
********* ******** * ***** ** * *** * ****** **
consensus_10335#0 GGTTG----TTATTC--AAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATC 522
consensus_10335#1 GGGGGGGGGTTATTCCAAAAAATTTTTGGGGGGCGAAAAGAATTTTTTTTTTCCACACCC 526
** * ****** *** *** *** ** * * * * * *
consensus_10335#0 CAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGC 582
consensus_10335#1 CA---AAAAAAAACGGGGGAGGAGAAAAAAACAAAAAACCCCCNTCTTTTCCCGCCCAAA 583
** ** ****** * * * * * *** * * **
consensus_10335#0 AATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGA 642
consensus_10335#1 AGAGAAGTGCCCTC-------TTTTTTT-------------------------------- 604
* * ** ** **** **
consensus_10335#0 TCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTT 702
consensus_10335#1 ------------------------------------------------------------
consensus_10335#0 TCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTA 762
consensus_10335#1 ------------------------------------------------------------
consensus_10335#0 TCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTC 822
consensus_10335#1 ------------------------------------------------------------
consensus_10335#0 TTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCAT 882
consensus_10335#1 ------------------------------------------------------------
consensus_10335#0 TGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGAT 942
consensus_10335#1 ------------------------------------------------------------
consensus_10335#0 CAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCAT 1002
consensus_10335#1 ------------------------------------------------------------
consensus_10335#0 ATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGC 1054
consensus_10335#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||