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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1383 fasta sequence
[CATCCAAGCACACGCGCGCACACGCACGCACGCACGTACATCGCGCGCGCCACGCCACGCCACGCCGCGGTCACACCGTTCCAAGCCACTCTCACACGCACGCGCGTCGCCGCCACTACACTCTCATGGCTTTCACGGTCAAGGCGTCGTCGCCGT-CGTCGCCGGCTGCTTCTTCTTCTTCTTCCTCGGCGCCAGCTAAGCTCGGAGCGGCGCCGGGGAGGGTCGCGGTCAGGAAGCTCACCGCGGCGGCGACGTCGCTTAGGCTCGATCGGGCGCCCGCGGCGCCGGCG-ACGGAGCGCGGGCTG-TCGTCGGTGTCGCGGACCATGTCGAGGCTGATGGAGAAGGGGAAGACGGCGTTCATCCCGTACATCACCGCCGGCGACCCGGACATGGGGACGACGGCGGAGGCGCTGCGGCTGCTCGACGCGTGCGGCGCCGACGTCATCGAGCTCGGCGTGCCCTTCTCCGACCCCTACAACGACGGCCCCGTCATCCAGGCCTCCGCCGCGCGGGCGCTCTCCGCCGGCGCCACGATGGACGGGATCATGTCGATGCTCGCGGAGGTGACGCCGGAGCTGTCATGCCCGGTGGTGCTCTTCTCCTATCTCGGCCCCATCGTCCGGCGAGGTCCGGCCAACTTCACCGCCGCAGCCAAAGAAGCCGGCGTACAAGGTCTAATAGTACCTGATCTTCCTTACCTAGAGGCATGCTCTTTCAGGAGTGAAGTTATCAAGAACAACCTAGAGCTGGTGCTGCTTACTACACCAACTACACCACCAGACAGGATGAAGGCAATCACAGCCGCCTCAGGAGGATTTGTTTACCTGGTTAGTGTCAATGGAGTTACAGGATCTCGCCAAGACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTAA-CAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGT-GCAGATGGGGTGATCA-TTGGCAGTGCA-ATGGTGAGGCAGCTGGGTGAAGCA-GCTTCTCCCA-AGCAAGGGCTGAAAAGGCTGGAGAA-GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACA-AGTT-GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT-CCTTGGGGACTGTAAAACA-CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAAAAATTGCTGCAAAAATGTGCAAAAAAAAAAA]
[+] EMBL AK072595 [CATCCAAGCACACGCGCGCACACGCACGCACGCACGTACATCGCGCGCGCCACGCCACGCCACGCCGCGGTCACACCGTTCCAAGCCACTCTCACACGCACGCGCGTCGCCGCCACTACACTCTCATGGCTTTCACGGTCAAGGCGTCGTCGCCGT CGTCGCCGGCTGCTTCTTCTTCTTCTTCCTCGGCGCCAGCTAAGCTCGGAGCGGCGCCGGGGAGGGTCGCGGTCAGGAAGCTCACCGCGGCGGCGACGTCGCTTAGGCTCGATCGGGCGCCCGCGGCGCCGGCG ACGGAGCGCGGGCTG TCGTCGGTGTCGCGGACCATGTCGAGGCTGATGGAGAAGGGGAAGACGGCGTTCATCCCGTACATCACCGCCGGCGACCCGGACATGGGGACGACGGCGGAGGCGCTGCGGCTGCTCGACGCGTGCGGCGCCGACGTCATCGAGCTCGGCGTGCCCTTCTCCGACCCCTACAACGACGGCCCCGTCATCCAGGCCTCCGCCGCGCGGGCGCTCTCCGCCGGCGCCACGATGGACGGGATCATGTCGATGCTCGCGGAGGTGACGCCGGAGCTGTCATGCCCGGTGGTGCTCTTCTCCTATCTCGGCCCCATCGTCCGGCGAGGTCCGGCCAACTTCACCGCCGCAGCCAAAGAAGCCGGCGTACAAGGTCTAATAGTACCTGATCTTCCTTACCTAGAGGCATGCTCTTTCAGGAGTGAAGTTATCAAGAACAACCTAGAGCTGGTGCTGCTTACTACACCAACTACACCACCAGACAGGATGAAGGCAATCACAGCCGCCTCAGGAGGATTTGTTTACCTGGTTAGTGTCAATGGAGTTACAGGATCTCGCCAAGACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTAAGCAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGT GCAGATGGGGTGATCA TTGGCAGTGCA ATGGTGAGGCAGCTGGGTGAAGCA GCTTCTCCCA AGCAAGGGCTGAAAAGGCTGGAGAA GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACA AGTT GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT CCTTGGGGACTGTAAAACA CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAA ]
[+] EMBL AU029571 [ GCGCACACGCACGCACGCACGTACATCGCGCGCGCCACGCCACGCCACGCCGCGGTCACACCGTTCCAAGCCACTCTCACACGCACGCGCGTCGCCGCCACTACACTCTCATGGCTTTCACGGTCAAGGCGTCGTCGCCGTNCGTCGCCGGCTGCTTCTTCTTCTTCTTCCTCGGCGCCAGCTAAGCTCGGAGCGGCGCCGGGGAGGGTCGCGGTCAGGAAGCTCACCGCGGCGGCGACGTCGCTTAGGCTCGATCGGGCGCCCGCGGCGCGGGCGAACGGAGCGCGGGCTGTTCGTCGGTGTCGCGGACCATGTCGAGGCTGATGGAGAA GGGAAGACGGCGTTCATCCCGTACATCACCGCCGGCGACCCGGACATGGGGACGACGGCGGAGGC ]
[+] EMBL BI810207 [ CAGGAGGATTTGTTTACCTGTTTAGTGTCAATGGAGTTACAGGATCTC CCAAGACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTAA CAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGT CAGATGGGGTGATCACTTGGCAGTGCACATGGTGAGGCAGCTGGGTGAAGCA GCTTCTCCCACAGC AGGGCTGAAAAGGCTGGAGAA GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACACAGTT GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT CCTTGGGGACTGTAAAACACCCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAAAA ]
[+] EMBL AU029572 [ GACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTAAGCAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGT GCAGATGGGGTGATCA TTGGCAGTGCA ATGGTGAGGCAGCTGGGTGAAGCA GCTTCTCCCA AGCAAGGGCTGAAAAGGCTGGAGAA GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACA AGTT GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCTTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT CCTTGGGGACTGTAAAACA CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTGCTGCAAAAA ]
[+] EMBL BI804881 [ ACCCGCGTGTTGAGCATC CCTTCAGGAGATTAA CAGGTCACTGACAAA CTGTGTGT TT GCTATGGCATATCAACCCCTGATCATGTTAGACAGATA CAGAGTGGGGT CAGATGGGGTGATCA TTGCCAGT CACATGGTGA GCA CTGGGTGAA CA GCTTCTCCCACAGCAAGGGCTGAAAAGGCTGGAGAA GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACACAGTT GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGATCCCTTGGGGACTGTAAAACA CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTGCTGCAATTGTGTGCAAAAAAAAAAA]
[+] EMBL BI810509 [ GCATCTCCTTCAGGAGATTAA CAGTTCACTGACCAAGCTGTGTGTGTT GCTATGGCATATCTACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGTGGCAGATGGGGTGATCA TTGGCAGTGCC ATGGTGAGGCAGCTGGGTGAATCATGCTTCTCCCA AGCAAGGGCTGAAAAGCCTGGAGAATGTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTAT AAAACA AGTTGGCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGC AATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT CCTTGGGGACTGTAAAACA CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAAAA ]
consensusID : consensus_10450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[AGGACGAGACAAGGGGGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCAATGGTGAGGCAGCTGGGTGAAGCAGCTTCTCCCAAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACAAGTTGCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTTGTAGTTTGTGAAAA]
[-] EMBL CA759434 [AGGACGAGACAAGGGGGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCAATGGTGAGGCAGCTGGGTGAAGCAGCTTCTCCCAAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACAAGTTGCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTTGTAGTTTGTGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10450#0 CATCCAAGCACACGCGCGCACACGCACGCACGCACGTACATCGCGCGCGCCACGCCACGC 60
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 CACGCCGCGGTCACACCGTTCCAAGCCACTCTCACACGCACGCGCGTCGCCGCCACTACA 120
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 CTCTCATGGCTTTCACGGTCAAGGCGTCGTCGCCGTCGTCGCCGGCTGCTTCTTCTTCTT 180
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 CTTCCTCGGCGCCAGCTAAGCTCGGAGCGGCGCCGGGGAGGGTCGCGGTCAGGAAGCTCA 240
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 CCGCGGCGGCGACGTCGCTTAGGCTCGATCGGGCGCCCGCGGCGCCGGCGACGGAGCGCG 300
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 GGCTGTCGTCGGTGTCGCGGACCATGTCGAGGCTGATGGAGAAGGGGAAGACGGCGTTCA 360
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 TCCCGTACATCACCGCCGGCGACCCGGACATGGGGACGACGGCGGAGGCGCTGCGGCTGC 420
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 TCGACGCGTGCGGCGCCGACGTCATCGAGCTCGGCGTGCCCTTCTCCGACCCCTACAACG 480
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 ACGGCCCCGTCATCCAGGCCTCCGCCGCGCGGGCGCTCTCCGCCGGCGCCACGATGGACG 540
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 GGATCATGTCGATGCTCGCGGAGGTGACGCCGGAGCTGTCATGCCCGGTGGTGCTCTTCT 600
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 CCTATCTCGGCCCCATCGTCCGGCGAGGTCCGGCCAACTTCACCGCCGCAGCCAAAGAAG 660
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 CCGGCGTACAAGGTCTAATAGTACCTGATCTTCCTTACCTAGAGGCATGCTCTTTCAGGA 720
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 GTGAAGTTATCAAGAACAACCTAGAGCTGGTGCTGCTTACTACACCAACTACACCACCAG 780
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 ACAGGATGAAGGCAATCACAGCCGCCTCAGGAGGATTTGTTTACCTGGTTAGTGTCAATG 840
consensus_10450#1 ------------------------------------------------------------
consensus_10450#0 GAGTTACAGGATCTCGCCAAGACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTA 900
consensus_10450#1 ------------------------------------------------AGGACGAGACAA 12
* **** *
consensus_10450#0 ACAGG-TCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTA 959
consensus_10450#1 GGGGGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTA 72
** ******************************************************
consensus_10450#0 GACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCAATGGTGAGGCAGC 1019
consensus_10450#1 GACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCAATGGTGAGGCAGC 132
************************************************************
consensus_10450#0 TGGGTGAAGCAGCTTCTCCCAAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCC 1079
consensus_10450#1 TGGGTGAAGCAGCTTCTCCCAAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCC 192
************************************************************
consensus_10450#0 TGAAGAATGCACTTCCATAGAAGCTATAAAAACAAGTTGCTAAATAATGGCATGAGAGAT 1139
consensus_10450#1 TGAAGAATGCACTTCCATAGAAGCTATAAAAACAAGTTGCTAAATAATGGCATGAGAGAT 252
************************************************************
consensus_10450#0 TAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCC 1199
consensus_10450#1 TAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCC 312
************************************************************
consensus_10450#0 TTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAA 1259
consensus_10450#1 TTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAA 372
************************************************************
consensus_10450#0 TAAGTGATGTATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGG 1319
consensus_10450#1 TAAGTGATGTATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGG 432
************************************************************
consensus_10450#0 TCGGATGTTAATTCTTCGGTTGTTCGAAGAAAAAAATTGCTGCAAAAATGTGCAAAAAAA 1379
consensus_10450#1 TCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTTGT-----AGTTTGTGAAAA-- 485
********************************* **** * * * ** ****
consensus_10450#0 AAAA 1383
consensus_10450#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||