cluster # 1066

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Oryza sativa
cluster # 1066 cluster # 1066 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1066#0 length = 508 sequences # 1

consensus_1066#1 length = 217 sequences # 1

consensusID : consensus_1066#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [ACAACTCTGATTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATACCAAAAAAGAGAGGTAAGTCGCGTCGACGAACAGTCTTTTCCTTGACCTCACACCCCACAGGTGTTCGCCATTTCGCCGCCCCCACCACCGCGCGCCGCCGCCGCCGCCATGGCCTCCATCTCCGCCGCCTCCCCCGTCGCTGGGAAGGCCGCCGCCTTCGCCCACAAAAACGAGCTCGCCGCCGCCGCCGTGGCGCCGTCGCAGCAGCAGCTGCAACGGAGGGTGAGTGGGAGGAGGGCCCCTTCGGGGAGGGTCCGCGCCGTCGCCACGCCCGCCCGCGCCCGCAGGGCCCCGATGTCCATTGGCTCGGTGAAGAGCGCCATGACGATGACAGAGAAGATCC]

[+] EMBL CB621449             [ACAACTCTGATTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATACCAAAAAAGAGAGGTAAGTCGCGTCGACGAACAGTCTTTTCCTTGACCTCACACCCCACAGGTGTTCGCCATTTCGCCGCCCCCACCACCGCGCGCCGCCGCCGCCGCCATGGCCTCCATCTCCGCCGCCTCCCCCGTCGCTGGGAAGGCCGCCGCCTTCGCCCACAAAAACGAGCTCGCCGCCGCCGCCGTGGCGCCGTCGCAGCAGCAGCTGCAACGGAGGGTGAGTGGGAGGAGGGCCCCTTCGGGGAGGGTCCGCGCCGTCGCCACGCCCGCCCGCGCCCGCAGGGCCCCGATGTCCATTGGCTCGGTGAAGAGCGCCATGACGATGACAGAGAAGATCC]




>consensus_1066#0
ACAACTCTGATTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTT
ACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACA
ATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATACCAAAAAAGAGAGGTA
AGTCGCGTCGACGAACAGTCTTTTCCTTGACCTCACACCCCACAGGTGTTCGCCATTTCG
CCGCCCCCACCACCGCGCGCCGCCGCCGCCGCCATGGCCTCCATCTCCGCCGCCTCCCCC
GTCGCTGGGAAGGCCGCCGCCTTCGCCCACAAAAACGAGCTCGCCGCCGCCGCCGTGGCG
CCGTCGCAGCAGCAGCTGCAACGGAGGGTGAGTGGGAGGAGGGCCCCTTCGGGGAGGGTC
CGCGCCGTCGCCACGCCCGCCCGCGCCCGCAGGGCCCCGATGTCCATTGGCTCGGTGAAG
AGCGCCATGACGATGACAGAGAAGATCC

consensusID : consensus_1066#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [ATTCGGTTCGTTACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTAATTTTCTTTTTTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTGCATCCCTATACACCACCAC]

[-] EMBL CF298127             [ATTCGGTTCGTTACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTAATTTTCTTTTTTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTGCATCCCTATACACCACCAC]




>consensus_1066#1
ATTCGGTTCGTTACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTATTATTAATTTTCTTTTTTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTA
TCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCA
GTGCTCCATCCACAATTGCATCCCTATACACCACCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1066#0      ------------------------------------------------------------
consensus_1066#1      ATTCGGTTCGTTACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                                                                                  

consensus_1066#0      --------------ACAACTCTGATTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTA 46
consensus_1066#1      TTTTTTTATTATTAATTTTCTTTTTTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTA 120
                                    *      *  ************************************

consensus_1066#0      TCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCA 106
consensus_1066#1      TCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCA 180
                      ************************************************************

consensus_1066#0      GTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATACC 166
consensus_1066#1      GTGCTCCATCCACAATTGCATCCCTATACACCACCAC----------------------- 217
                      ***************** ****** ************                       

consensus_1066#0      AAAAAAGAGAGGTAAGTCGCGTCGACGAACAGTCTTTTCCTTGACCTCACACCCCACAGG 226
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      TGTTCGCCATTTCGCCGCCCCCACCACCGCGCGCCGCCGCCGCCGCCATGGCCTCCATCT 286
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CCGCCGCCTCCCCCGTCGCTGGGAAGGCCGCCGCCTTCGCCCACAAAAACGAGCTCGCCG 346
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CCGCCGCCGTGGCGCCGTCGCAGCAGCAGCTGCAACGGAGGGTGAGTGGGAGGAGGGCCC 406
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CTTCGGGGAGGGTCCGCGCCGTCGCCACGCCCGCCCGCGCCCGCAGGGCCCCGATGTCCA 466
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      TTGGCTCGGTGAAGAGCGCCATGACGATGACAGAGAAGATCC 508
consensus_1066#1      ------------------------------------------