cluster # 10717

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Oryza sativa
cluster # 10717 cluster # 10717 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10717#0 length = 366 sequences # 6

consensus_10717#1 length = 275 sequences # 2

consensusID : consensus_10717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 366
fasta sequence

                              [TTTTTTCACAAATTCACAGATCAAATAAACATCACAGATCTTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATCGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGGGATAAG]

[-] EMBL CF298927             [TTTTTTCACAAATTCACAGATCAAATAAACATCACAGATCAAAATGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATCGGGAAAGGA                                         ]
[+] EMBL CF298928             [                          AAACATCACAGATCAAAATGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTTACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACTTC CATAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATCGGGAAAGG                                          ]
[+] EMBL CF291537             [                                   tttttTTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATGGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGGGATAA ]
[-] EMBL CF291536             [                                    ttttTTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATGGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGGGATAAG]
[-] EMBL AU057950             [                                        TTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATCGGGAAAGGAGTGAAGAGGATGAG                           ]
[-] EMBL AK058962             [                                                                               ATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAG                                                                           ]




>consensus_10717#0
TTTTTTCACAAATTCACAGATCAAATAAACATCACAGATCTTTTTGACAACACAAATTCA
CAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCA
CACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCA
GCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTC
CACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAG
AGGAGGAGAGGGGATCGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGG
GATAAG

consensusID : consensus_10717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 275
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAACACAAATTCACAGATCATTGGTATCACAAATTCACATACTTCACAAAATTAATCATCCACAGGAGCACCACACATTTACAACGACATTACAAAAACAAGTCCTCACATTGGCGTCTTCAGCGCTGCATTAACCCGCTCGTCGGGGCCGGGACAACCCCTCCGGGCCGGCGGCTGGCACCGTTCTTCCCTTCACCCGCCCGAACGGCGGCTGGCACCTTCTGGCACCAATAGGTAAGGGGA]

[+] EMBL CF298827             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAACACAAATTCACAGATCATTGGTATCACAAATTCACATACTTCACAAAATTAATCATCCACAGGAGCACCACACATTTACAACGACATTACAAAAACAAGTCCTCACATTGGCGTCTTCAGCGCTGCATTAACCCGCTCGTCGGGGCCGGGACAACCCCTCCGGGCCGGCGGCTGGCACCGTTCTTCCCTTCACCCGCCCGAACGGCGGCTGGCACCTTCTGGCACCAATAGGTAAGGGGA]
[+] EMBL CF301311             [                TTTTTTTTTTTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATA                                                                                                                                                                                                          ]




>consensus_10717#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAACACAAATTCACAGATCATTGGTATC
ACAAATTCACATACTTCACAAAATTAATCATCCACAGGAGCACCACACATTTACAACGAC
ATTACAAAAACAAGTCCTCACATTGGCGTCTTCAGCGCTGCATTAACCCGCTCGTCGGGG
CCGGGACAACCCCTCCGGGCCGGCGGCTGGCACCGTTCTTCCCTTCACCCGCCCGAACGG
CGGCTGGCACCTTCTGGCACCAATAGGTAAGGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10717#0      TTTTTTCACAAATTCACAGATCAAATAAACATCACAGATCTTTTTGACAACACAAATTCA 60
consensus_10717#1      ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAACACAAATTCA 45
                                           *    *     *      * ********************

consensus_10717#0      CAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCA 120
consensus_10717#1      CAGATCATTGGTATCACAAATTCACATACTTCACAAAATTAATCATCCACAGGAGCACCA 105
                       ********** ***************************************** *******

consensus_10717#0      CACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCA 180
consensus_10717#1      CACATTTACAACGACATTACAAAAACAAGTCCTCACATTGGCGTCTTCAGCGCTGCATTA 165
                       ***** *********** ******************** * ***************** *

consensus_10717#0      GCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTC 240
consensus_10717#1      ACCCGCTCGTCGGGGCCGGGACAACCCCTCCGGGCCGGCGGCTGGCACCGTTCTTCCCTT 225
                        ********** * **** ****************** ** *** ****** ** **** 

consensus_10717#0      CACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAG 300
consensus_10717#1      CACCCGCCCGAACGGCGGCTGGCACCTTCTGGCACCAATAGGTAAGGGGA---------- 275
                       *********** ** ** *** ***** *** ******************          

consensus_10717#0      AGGAGGAGAGGGGATCGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGG 360
consensus_10717#1      ------------------------------------------------------------
                                                                                   

consensus_10717#0      GATAAG 366
consensus_10717#1      ------