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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1202 fasta sequence
[TCCTGCTCCTGCGGTGGGCGCCGCGCCACCGGTGGTGCCGGCGCTGTCGTCGGCGATCAGCAAGCTGCTGCAGTCGGAGCCCATGGCGGCGCCGTGCGCGGACTTCCCCAACGTGCTCCCGACCTTCGTGTCCACCGGGTTCGAGCTCCCCGCCGCCGCCGGCGACCGCCTCTCGCTGGGGTCGTTCGGGGCGTTCGGCAACCTGTCGGCGGCGGTGGCGGCTCCCGGCGGTGGTGGTGGGTCGTCGACGACCACGTCGTTCATGGACATGCTGAGGGGAGTTGGAGGGCTTTTCGACGGCGTCGGCAACAGCCATCAGATGGGCGGCAATGGCGGCGGCGGAGGCAGCTACTACGCGCCTCTCATCACCGGCGCCGGCAATGGCATGCTGATGCCGCCGCCGCCGCTGCCGCCATTTTCTGGTTCTCTGATGCAGCATGGGATGCAGGGGCTGTTCGCCAATCATGCGATGGGAGGAGGTGGTGGTGGAGTGATGAACGCCGGCGAGGACGGCAGCGTGATGGCGGGGCTGGGAGGAGGCCAGTGGCCGCCGGCGCTTGGTGGTGCAGACGAGCAGCAGGGCGGCGGCGACGGTGGCGAAGCTGTGATGACGAAGGACACCGGCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACAGCGCCGCTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC-GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTCTCATGTTT-AAGG-GGAGTTAATT-AAATGTACATCATTGGTCGTGACAAAAAAAAAATGCCGTTGGTTTGTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AB028131 [TCCTGCTCCTGCGGTGGGCGCCGCGCCACCGGTGGTGCCGGCGCTGTCGTCGGCGATCAGCAAGCTGCTGCAGTCGGAGCCCATGGCGGCGCCGTGCGCGGACTTCCCCAACGTGCTCCCGACCTTCGTGTCCACCGGGTTCGAGCTCCCCGCCGCCGCCGGCGACCGCCTCTCGCTGGGGTCGTTCGGGGCGTTCGGCAACCTGTCGGCGGCGGTGGCGGCTCCCGGCGGTGGTGGTGGGTCGTCGACGACCACGTCGTTCATGGACATGCTGAGGGGAGTTGGAGGGCTTTTCGACGGCGTCGGCAACAGCCATCAGATGGGCGGCAATGGCGGCGGCGGAGGCAGCTACTACGCGCCTCTCATCACCGGCGCCGGCAATGGCATGCTGATGCCGCCGCCGCCGCTGCCGCCATTTTCTGGTTCTCTGATGCAGCATGGGATGCAGGGGCTGTTCGCCAATCATGCGATGGGAGGAGGTGGTGGTGGAGTGATGAACGCCGGCGAGGACGGCAGCGTGATGGCGGGGCTGGGAGGAGGCCAGTGGCCGCCGGCGCTTGGTGGTGCAGACGAGCAGCAGGGCGGCGGCGACGGTGGCGAAGCTGTGATGACGAAGGACACCGGCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACA CGCCGCCGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTACATCATTGGTCGT ]
[+] EMBL AK107294 [TCCTGCTCCTGCGGTGGGCGCCGCGCCACCGGTGGTGCCGGCGCTGTCGTCGGCGATCAGCAAGCTGCTGCAGTCGGAGCCCATGGCGGCGCCGTGCGCGGACTTCCCCAACGTGCTCCCGACCTTCGTGTCCACCGGGTTCGAGCTCCCCGCCGCCGCCGGCGACCGCCTCTCGCTGGGGTCGTTCGAGGCGTTCGGCAACCTGTCGGCGGCGGTGGCGGCTCCCGGCGGTGGTGGTGGGTCGTCGACGACCACGTCGTTCATGGACATGCTGAGGGGAGTTGGAGGGCTTTTCGACGGCGTCGGCAACAGCCATCAGATGGGCGGCAATGGCGGCGGCGGAGGCAGCTACTACGCGCCTCTCATCACCGGCGCCGGCAATGGCATGCTGATGCCGCCGCCGCCGCTGCCGCCATTTTCTGGTTCTCTGATGCAGCATGGGATGCAGGGGCTGTTCGCCAATCATGCGATGGGAGGAGGTGGTGGTGGAGTGATGAACGCCGGCGAGGACGGCAGCGTGATGGCGGGGCTGGGAGGAGGCCAGTGGCCGCCGGCGCTTGGTGGTGCAGACGAGCAGCAGGGCGGCGGCGACGGTGGCGAAGCTGTGATGACGAAGGACACCGGCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACAGCGCCGCCGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTACATCAT ]
[+] EMBL BI797987 [ gcGCGGCGAC GT GCGAA CTGTGATGACGAAGGACACC GCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACAGCGCCGCTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGCCAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGC AAAGGTTCTCATGTTTCAAGGCGGAGTTAATTCAAATGTAaaaaaaaaa ]
[+] EMBL BI798639 [ CGAAGGACACC GC GCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACAGCGCCGCTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAACTGCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGC AAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTAaaaaaaaaa ]
[+] EMBL BI795285 [ GGACTACTTCTACGGCTGGAACAGCGCC CTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCCAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGGTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTTTCATGTTT AAGG GGAGTTAATT AAATGTACATCATTGGTCGTGACAAAAAAAAAA ]
[+] EMBL C99324 [ CGGCCNTGATGTAAGCTCAATCAAATCANCCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCNCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCNCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGNCAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGCCCTCATGGANCCATGCAAAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTACATCATTGGTCGTGACATTGCTTAATTGCCGTTGGTTTGTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU163962 [ CGTCGAAACAGTTTTAAATTTTNCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTACATCATTGGTCGTGAAAAAAAAA ]
consensusID : consensus_10973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence
[CGAGGCCGGACTACTTTTACGGCTGGGACAGCGCCCCTGGCGGCGTCTCGCTGGAGCGGCATCGGCGGCAACCCGCCGCTGCCCCCGGAGCAACGCCCTGGCAGGGCCTCATCGACAGCCAGCTCGGCCCTGATGTAAGCTCCATCCAATCCAACCCTGCCCAGGTTGGAGAGAGATCTCATCCCGAAGTTGTTGCTAGCTTCTTGGAATAGATTGTTTCTTGCAGCTTGCATCGATGCGCTTTAGTTCCGTTTGTTTGATCCGTGGGATGCCAATTGAGTTGCAGCTCCTTTGGGAGAAAATTGCGTGCGAAACCAGTGTTTGAAATTTTGCTGAGGACCAATAGAATAGTGCGTGCGTGCGTGCATGCGTGCGCTGCGTTTGACCCGTGAATTAGCTTGGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCCAGCCAAAGGTTTTCATGTTTAAGGGGAGTTAATTAAATGTACCTCCTTGGTCGTGAAAAAAAAAA]
[+] EMBL BI794941 [CGAGGCCGGACTACTTTTACGGCTGGGACAGCGCCCCTGGCGGCGTCTCGCTGGAGCGGCATCGGCGGCAACCCGCCGCTGCCCCCGGAGCAACGCCCTGGCAGGGCCTCATCGACAGCCAGCTCGGCCCTGATGTAAGCTCCATCCAATCCAACCCTGCCCAGGTTGGAGAGAGATCTCATCCCGAAGTTGTTGCTAGCTTCTTGGAATAGATTGTTTCTTGCAGCTTGCATCGATGCGCTTTAGTTCCGTTTGTTTGATCCGTGGGATGCCAATTGAGTTGCAGCTCCTTTGGGAGAAAATTGCGTGCGAAACCAGTGTTTGAAATTTTGCTGAGGACCAATAGAATAGTGCGTGCGTGCGTGCATGCGTGCGCTGCGTTTGACCCGTGAATTAGCTTGGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCCAGCCAAAGGTTTTCATGTTTAAGGGGAGTTAATTAAATGTACCTCCTTGGTCGTGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10973#0 TCCTGCTCCTGCGGTGGGCGCCGCGCCACCGGTGGTGCCGGCGCTGTCGTCGGCGATCAG 60
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 CAAGCTGCTGCAGTCGGAGCCCATGGCGGCGCCGTGCGCGGACTTCCCCAACGTGCTCCC 120
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 GACCTTCGTGTCCACCGGGTTCGAGCTCCCCGCCGCCGCCGGCGACCGCCTCTCGCTGGG 180
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 GTCGTTCGGGGCGTTCGGCAACCTGTCGGCGGCGGTGGCGGCTCCCGGCGGTGGTGGTGG 240
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 GTCGTCGACGACCACGTCGTTCATGGACATGCTGAGGGGAGTTGGAGGGCTTTTCGACGG 300
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 CGTCGGCAACAGCCATCAGATGGGCGGCAATGGCGGCGGCGGAGGCAGCTACTACGCGCC 360
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 TCTCATCACCGGCGCCGGCAATGGCATGCTGATGCCGCCGCCGCCGCTGCCGCCATTTTC 420
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 TGGTTCTCTGATGCAGCATGGGATGCAGGGGCTGTTCGCCAATCATGCGATGGGAGGAGG 480
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 TGGTGGTGGAGTGATGAACGCCGGCGAGGACGGCAGCGTGATGGCGGGGCTGGGAGGAGG 540
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 CCAGTGGCCGCCGGCGCTTGGTGGTGCAGACGAGCAGCAGGGCGGCGGCGACGGTGGCGA 600
consensus_10973#1 ------------------------------------------------------------
consensus_10973#0 AGCTGTGATGACGAAGGACACCGGCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTA 660
consensus_10973#1 -----------------------------------------------CGAGGCCGGACTA 13
*************
consensus_10973#0 CTTCTACGGCTGGAACAGCGCCGCTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAA 720
consensus_10973#1 CTTTTACGGCTGGGACAGCGCCCCTGGCGGCGTC-TCGCTGGAG-CGGCATCGGCGGCAA 71
*** ********* ******** *********** ********* ***************
consensus_10973#0 CGCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGC-AGCTCGGCCA 779
consensus_10973#1 C-CCGCCGCTGCCCCCGGAGCAACGCCCTGGCAGGGCCTCATCGACAGCCAGCTCGGCCC 130
* *********** ************* ********************* *********
consensus_10973#0 TGATGTAAGCTCAATCAAATC-AACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGT 838
consensus_10973#1 TGATGTAAGCTCCATCCAATCCAACCCTGCCCAGGTTGGAGAGAGATCTCATCCCGAAGT 190
************ *** **** **** **** ********************** *****
consensus_10973#0 TGTTGCTAGCTTCTTGGAAT-GATT-TTTCTT-CAGCTT-CATCGAT-CGCTTTAGTTC- 892
consensus_10973#1 TGTTGCTAGCTTCTTGGAATAGATTGTTTCTTGCAGCTTGCATCGATGCGCTTTAGTTCC 250
******************** **** ****** ****** ******* ***********
consensus_10973#0 GTTTTTT--ATCCGTGGA---TCAAATTAGTT----CGCTCTTTGGAAAAATTCGT---C 940
consensus_10973#1 GTTTGTTTGATCCGTGGGATGCCAATTGAGTTGCAGCTCCTTTGGGAGAAAATTGCGTGC 310
**** ** ******** *** * **** * * ** *** *** * * *
consensus_10973#0 GAAACA---GTTTTAAATTTTGCTA--GACAAAT-GAATGTCGTCGTCGT-----CAT-C 988
consensus_10973#1 GAAACCAGTGTTTGAAATTTTGCTGAGGACCAATAGAATAGTGCGTGCGTGCGTGCATGC 370
***** **** ********** *** *** **** * *** *** *
consensus_10973#0 GT-CGCT-CGTTT-ACCTGT-AATTAGCTTGG-AGTTGGGGTTGTTTGATTGACCTCATG 1043
consensus_10973#1 GTGCGCTGCGTTTGACCCGTGAATTAGCTTGGGAGTTGGGGTTGTTTGATTGACCTCATG 430
** **** ***** *** ** *********** ***************************
consensus_10973#0 GAACCATGCAAAAGGTTCTCATGTTTAAGGGGAGTTAATTAAATGTACATCATTGGTCGT 1103
consensus_10973#1 GAACCCAGCCAAAGGTTTTCATGTTTAAGGGGAGTTAATTAAATGTACCTCCTTGGTCGT 490
***** ** ******* ****************************** ** ********
consensus_10973#0 GACAAAAAAAAAATGCCGTTGGTTTGTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1163
consensus_10973#1 GAAAAAAAAAA------------------------------------------------- 501
** ********
consensus_10973#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1202
consensus_10973#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||