These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence [GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG-CGGCGC-TTCTCGGA-CCCGTCGGTGCATGCGGACATG-AAGATGTGGCCTGTCAAGGTGGTGCCTGGCCCATGCGATCAGCCGTGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTCTCGGTGGAGGAATCTGGTCATGGTGCTACATGATGAAGAGATCGCGAGGCCTTCTCACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAAGACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTGACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACTTTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGGCGGT] [+] EMBL AW155003 [GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG CGGCGC TTCTCGGA CCCGTCGGTGCATGCGGACATG AAGATGTGGCCTGTCAAGGTGGTGCCTGGCCCATGCGATCAGCCGTGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTCTCGGTGGAGGAATCTGGTCATGGTGCTACATGATGAAGAGATCGCGAGGCCTTCTCACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAAGACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTGACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACTTTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGGCGGT] [+] EMBL AU069411 [ AAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTT ACCGACACCGAGAGGCTCATCGGCGACGCCGNCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGGCCGGCGCTTTTTCGGACCCCGTCGGTGCAAGCGGACATGAAAGATGTGGCC GTCAANGTGGTGCt ] consensusID : consensus_11081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 673 fasta sequence [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA-CG-NA-TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC-GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC-TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG-TGGTGCC-TGGCCCAGCCGAC-AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCT-ACCAAGATGAAGGAGATCGCCGAGGCCTTCCTCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCAACGACTCCCAACGCCAGGCCACCAAGGACGCCGGCGTCATCTCCGGACTCAACGTCATGCGCATCATCAACGAGCCCACCGCCGGCCGCCATCGCNTA] [+] EMBL AU069550 [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA G NANTCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCNGACACCGAGAGGCTCATCGGCGACGCC CAAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAG GGC TTATCGGGCGGCGTTTTTCGGACCCGTCGGTGCAGGCGGACATTAAGATGTGGCCGTTNAAGG TTGTTCCTTGGCCCAGCCGACAAAGCCGATNATCGTGGTTACGT ] [+] EMBL AU162017 [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCG AA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG TGGTGCC TGGCCCACCCGAC AAGCCGATGATCGTGGT ] [+] EMBL AU069365 [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA NG TA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGNAGAGCTTNATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGNCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTAGCCTTCACC GACACCGAGAGGCTCATCGNCGACG CGNCAAGAACCAGGTCGNCATGAACCCCACCAACANCGTCTTTGATGCAAAGCGGCTTGATCGNGCGGCGGTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGNCGTTCAAGGTTGGTG C TGGCCCAGCCGAC AAGCCGTTG TCGTGGTGA ] [+] EMBL AU162015 [ AAAAAACAGAGCAAAATCGTCCCAGCGCGAGCG AA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCG TCAAGG TGGTGCC TGG CCA CCGAC AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCT ACCAAGATGAAGG ] [+] EMBL AU161264 [ AAAAACAGAGCAAAATCGTCCCAGCGCGA CGANA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCG TTTTCGGACCCGTCGGTGCAGGCGGACATGAA ] [+] EMBL AU069308 [ AAAATCGTCCCAGCGCGA NG NA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG TGGTGCC TGGCCCAGCCGAC AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCTCACCAAGATGAAGGAGATCGCCGAGGCCTTCCTCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCAACGACTCCCAACGCCAGGCCACCAAGGACGCCGGCGTCATCTCCGGACTCAACGTCATGCGCATCATCAACGAGCCCACCGCCGGCCGCCATCGCNTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11081#0 GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCA 60 consensus_11081#1 ------------AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA-CGNATCAGAAGAGCA 47 ******************************** ** ************ consensus_11081#0 ACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGA 120 consensus_11081#1 ACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGA 107 ************************************************************ consensus_11081#0 AAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTAC 180 consensus_11081#1 AAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTAC 167 ************************************************************ consensus_11081#0 TCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAAC 240 consensus_11081#1 TCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAAC 227 ************************************************************ consensus_11081#0 CGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCC 300 consensus_11081#1 CGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCC 287 ************************************************************ consensus_11081#0 AAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG 360 consensus_11081#1 AAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG 347 ************************************************************ consensus_11081#0 CGGCGCTTCTCGGACCCGTCGGTGCATGCGGACATGAAGATGTGGCCTGTCAAGGTGGTG 420 consensus_11081#1 CGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGGTGGTG 407 ************************** ******************** *********** consensus_11081#0 CCTGGCCCATGCGATCAGCCG-TGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTC 479 consensus_11081#1 CCTGGCCCAGCCGACAAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTC 467 ********* *** ***** ***************** ******* ******* *** consensus_11081#0 TCGGTGGAGGA-ATCTGGTC-ATGGTGCTAC-ATGATGAAG-AGATCGC-GAGGCCTTCT 534 consensus_11081#1 TCGGCGGAGGAGATCTCGTCCATGGTGCTACCAAGATGAAGGAGATCGCCGAGGCCTTCC 527 **** ****** **** *** ********** * ******* ******* ********* consensus_11081#0 CACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAA 594 consensus_11081#1 TCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCA-ACGACTCCCAA 586 ***** *** * * * * * * * * * ** * *** consensus_11081#0 GACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTG 654 consensus_11081#1 CGCCAGGCCACCAAGGACGCCGGCG-TCATCTCCGGACTCAACGTCATGCGCATCATC-A 644 ** ** * * ** ** * ** * * * * * * * * * ** * consensus_11081#0 ACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACT 714 consensus_11081#1 ACGAGCCCACCGCCGGCCGCCATCGCNTA------------------------------- 673 ** * * * * * ** ** consensus_11081#0 TTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGG 774 consensus_11081#1 ------------------------------------------------------------ consensus_11081#0 CGGT 778 consensus_11081#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||