These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 336 fasta sequence [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC-G-GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC-TACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCAGGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGC-TCGACGGCAAGGGTNTNGCCGAGGGCGTCGGCGATTGCG] [+] EMBL OSS3420A [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC G GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC TACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCAGGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGC TCGACGGCAAGGGTNTNGCCGAGGGCGTCGGCGATTGCG] [+] EMBL OSS1612A [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACCGG GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC TACNACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCAGGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGCTTCGACGGCAGGGTTTTNGCCGAGGG ] [+] EMBL OSS2448A [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC G GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC TACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCAGGCTGGTGGTCGGCGNGGAGGTGGCGATGTGGACGGAGCAGGTGGA ] [+] EMBL OSS1721A [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC G GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCNGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCANCGGCGGGTCGTGGTGCGGACCGTACAANACGTTGCANCGGGTNTACGAC TACNACGTCGCGGGNGGGNTCAACG CGAGGAGGCCAAGNTTGTNGTCGGCGGGGAng ] [+] EMBL OSS3276A [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACCGG GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGNCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGNGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC TACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGNCAGG ] [+] EMBL OSS1546A [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC G GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTTGCAACGGGTTTACGACTTACGACGTCGCGGGCGGGCTNANCGCC ] [+] EMBL OSS2356A [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC GNGCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGT ] consensusID : consensus_11245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [TGGAACAACGGCGGCAACAACACGAGNCTGATCGTGCGCNCCGGGTACCGCCAATCGTCTCGTNGGCATCNTTNTACNACCTCGACTGCGGCCACGGCGACTTCGCNCNANACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTNTACGACTACGACGTCGCGGGCNGGCTCACCCGAAGGAGGCCAGGATGGTGGTCG] [+] EMBL OS1321787 [TGGAACAACGGCGGCAACAACACGAGNCTGATCGTGCGCNCCGGGTACCGCCAATCGTCTCGTNGGCATCNTTNTACNACCTCGACTGCGGCCACGGCGACTTCGCNCNANACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTNTACGACTACGACGTCGCGGGCNGGCTCACCCGAAGGAGGCCAGGATGGTGGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11245#0 TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACCGGCCATCGTCT 60 consensus_11245#1 TGGAACAACGGCGGCAACAACACGAGNCTGATCGTGCGCNCCGGGTACCGCCAATCGTCT 60 ************************** ************ ********** * ******* consensus_11245#0 CGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCG 120 consensus_11245#1 CGTNGGCATCNTTNTACNACCTCGACTGCGGCCACGGCGACTTCGCNCNANACGACTCCG 120 *** *** ** ** *** **************************** ********* consensus_11245#0 CCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACA 180 consensus_11245#1 CCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACA 180 ************************************************************ consensus_11245#0 AGACGTGGCAGCGGGTGTACGACTACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCA 240 consensus_11245#1 AGACGTGGCAGCGGGTNTACGACTACGACGTCGCGGGCNGGCTCACC-CGAAGGAGGCCA 239 **************** ********************* ******** * ********* consensus_11245#0 GGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGCTCG 300 consensus_11245#1 GGATGGTGGTCG------------------------------------------------ 251 ** ********* consensus_11245#0 ACGGCAAGGGTNTNGCCGAGGGCGTCGGCGATTGCG 336 consensus_11245#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||