|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1128 fasta sequence
[TCTCTCTCTCTCTCCCCTGTCCTCCCCGATTCCCAATCTCGCTCTCAAGTCGCAGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGCGGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCCTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACTCATGTTGAGGTCGGCATCCGC-GGCAATCCACCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGC-AAAAAAGAGAGAAGGGGAAAACATGGTCATCTCC-AATACAAGGCCAA-GGTA-GC-TTAGATCCATATG-CTGCAGACCAAGAACAAAAAC-GGCTTATGC-TGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCCGGGTCCTTTCAAAAAAAAAAAA]
[+] EMBL AK061159 [TCTCTCTCTCTCTCCCCTGTCCTCCCCGATTCCCAATCTCGCTCTCAAGTCGCAGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGCGGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCCTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACTCATGTTGAGGTCGGCATCCGC GGCAATCCACCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGCAAAAAAAGAGAGAAGGGGAAAACATGGTCATCTCC AATACAAGGCCAA GGTA GC TTAGATCCATATG CTGCAGACCAAGAACAAAAAC GGCTTATGC TGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCC ]
[+] EMBL AK101664 [ CCGATTCCCAATCTCGCTCTCAAGTCGCAGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGCGGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCCTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACTCATGTTGAGGTCGGCATCCGC GGCAATCCACCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGC AAAAAAGAGAGAAGGGGAAAACATGGTCATCTCC AATACAAGGCCAA GGTA GC TTAGATCCATATG CTGCAGACCAAGAACAAAAAC GGCTTATGC TGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCC ]
[+] EMBL C27335 [ TCGCAGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCNGGTGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTNTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGANGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTAAGAAGCGGCACGNTTTCGTCCAAAACGGGCAGAA ]
[+] EMBL AU081270 [ AGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGCGGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCCTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGC ]
[+] EMBL OS1321752 [ gtatgCCAGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGANTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACTCATGTTGAGGTCGGCATCCGC GGCAATCCACCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGC AAAAAAGAGAGAAGGGGAAAACATGGTCATCTCCAAATACAAGGCCAANGGTAGGCTTTAGATCCATATGNTTGCAGACCAAGAACAAAAACGGGNTTATGCTTGCAAAGG ]
[-] EMBL CA763425 [ tTTTCGATGGGCCATCCAGGCCAGTCATGTTGAGGTGGACATTCGCGGGCAATCCGCCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCCTTCTGGACAATAGAGGATGGTGAAATGCACATCCCACTGC AAAAAAGAGAGAAGGGGAAAACATGGTCATCTCC AATACAAGGCCAA GGTA GC TTAGATCCATATG CTGCAGACCAAGAACAAAAAC GGCTTATGC TGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCAAGCCAGACGTAGGATTCTAAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCCGGGTCCTTTCAAAAAAAAAAAA]
[-] EMBL BI305483 [ AAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCCG ]
consensusID : consensus_11269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence
[ATGGTGAAATGCACATCACACTGCAAAAAAGAGAGAAGGGGAAAACATGGTCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCATATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU081271 [ATGGTGAAATGCACATCACACTGCAAAAAAGAGAGAAGGGGAAAACATGGTCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCATATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11269#0 TCTCTCTCTCTCTCCCCTGTCCTCCCCGATTCCCAATCTCGCTCTCAAGTCGCAGCAGCA 60
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 CTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGC 120
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 GGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCT 180
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 TCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCT 240
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 CGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGA 300
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 GGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCC 360
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 TTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATG 420
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 TACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACT 480
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 CATGTTGAGGTCGGCATCCGCGGCAATCCACCCTACCTCAACCATGACCTGACACTCCCA 540
consensus_11269#1 ------------------------------------------------------------
consensus_11269#0 GTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGCAA 600
consensus_11269#1 ----------------------------------ATGGTGAAATGCACATCACACTGCAA 26
**************************
consensus_11269#0 AAAAGAGAGAAGGGGAAAACATGGTCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCA 660
consensus_11269#1 AAAAGAGAGAAGGGGAAAACATGGTCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCA 86
************************************************************
consensus_11269#0 TATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTTTCAAGAAGAGAATCCA 720
consensus_11269#1 TATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTTTCAAGAAGAGAATCCA 146
************************************************************
consensus_11269#0 GGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATG 780
consensus_11269#1 GGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATG 206
************************************************************
consensus_11269#0 GGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTG 840
consensus_11269#1 GGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTG 266
************************************************************
consensus_11269#0 CTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTG 900
consensus_11269#1 CTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTG 326
************************************************************
consensus_11269#0 TAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAA 960
consensus_11269#1 TAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAA 386
************************************************************
consensus_11269#0 TGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATT 1020
consensus_11269#1 TGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATT 446
************************************************************
consensus_11269#0 GATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGA 1080
consensus_11269#1 GATCTAGCATCCTTGATGATGTAAAAAAAAAAAAAAAAAAAA------------------ 488
*********************** ** * * *
consensus_11269#0 ATGAAAATATACCATCTACCCATGCCGGGTCCTTTCAAAAAAAAAAAA 1128
consensus_11269#1 ------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||