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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2132 fasta sequence
[CGAATACACAATTTCTTTTTTCACGGTCTAGCCAAATTTCCCAATCCGTCGGCGCTCACCGTCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTCATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCAACATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGAT-GGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGAACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGTAATTAAATTGAGTTATTGGAGAAGATAGAGAGAAATCAGACTGGAAGACATGATTTATTTTTTTTACTAGTGCTATTGATTTCCCAGGCATAAATTCATATTATTTTTGTATACATATATAGACGTATCCCGTATCCATGTTTTTCAGAAAATGATGTATCCTATCCATATCCGTATCCCTGTATCTCGGTAACATAGAGCAAAGGATGTTGCTTGCTGCAGATGGGGTGACGGCCGCAGCGGCAGCGACAGTGAGTAGTTTAGAACTTCAGATTAGCTATCTTAGTAGGCAAGCAGAGCAGGCAGGGCGAGCATTGCTAGCGTAGAATAGCTCAGATGAGTTATGTTTGTTTCTGAATTTCTGTCTTTGTTTCTGAATTTCTGTCTCCCACAAGGTTACCTTGGTTATACTGCACAATATCCAAATTTGCTATACACGGTCTCTCATATTTATTAATTTCTTCAGTTTGTCCAATTTCTCATATGAATTTTGAAAAATAAGAAACACCTTCCATGGGAATACCAATATATCTGTTACTGTCCAATGTCTATTTTTCAGCTCAAATCCTCATGATTTTGTTTAGTTCTAATTTATCTGTTCATATCTTTGTACAGGAATATTTTTTCTGGTCAGCCTACAGAGACAAGTTCTGGCAAGGAAGCATGTCAGTAGATAAGAGTTGGATGCGCATGAGTAGGGCAACTGCAGAGTGGCAAAAAGGGTTG-CAGGAATTTTTAAATTTTGCATTTCAAGATGATAATCCTGGGGATAATGCCCCCTGTCCATGTAGAAGATGCCTTAATGTGGTACACAAAACACGCTCCGAAGTGCAAAGTGACTTGCTAAGGAATGGATTCGATGAAAGTTACATACAGTGGGTTTACCACGGTGAAGATTCAGATGATGACAATGTCACGGGAAGATTCAGAAGAACGTAAGGAAAGGGAAATGCTACGGGAGGATATTCTCAAAATGATTACTACGCAAAGCGTAGCATCGGAACAACAGTCTGATCTGGCAATAGATTGTCCAACTGAGAATAGAGAACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTTTTTAACAGCGCTAATTTGCAAGGAACAACAAGTACTACCCGGCAAAATATTTCTTCACAACATCTTAGGAATGTTGCTAGAAATTTTGTACGGTCCCGAACTGATCAGGCCAGAGGAGAAAATGGAAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTTGGTGTAGCATCCAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAAACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAAACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAATTTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTCTT]
[+] EMBL AK072376 [CGAATACACAATTTCTTTTTTCACGGTCTAGCCAAATTTCCCAATCCGTCGGCGCTCACCGTCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTCATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCGACATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGAT GGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGAACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGTAATTAAATTGAGTTATTGGAGAAGATAGAGAGAAATCAGACTGGAAGACATGATTTATTTTTTTTACTAGTGCTATTGATTTCCCAGGCATAAATTCATATTATTTTTGTATACATATATAGACGTATCCCGTATCCATGTTTTTCAGAAAATGATGTATCCTATCCATATCCGTATCCCTGTATCTCGGTAACATAGAGCAAAGGATGTTGCTTGCTGCAGATGGGGTGACGGCCGCAGCGGCAGCGACAGTGAGTAGTTTAGAACTTCAGATTAGCTATCTTAGTAGGCAAGCAGAGCAGGCAGGGCGAGCATTGCTAGCGTAGAATAGCTCAGATGAGTTATGTTTGTTTCTGAATTTCTGTCTTTGTTTCTGAATTTCTGTCTCCCACAAGGTTACCTTGGTTATACTGCACAATATCCAAATTTGCTATACACGGTCTCTCATATTTATTAATTTCTTCAGTTTGTCCAATTTCTCATATGAATTTTGAAAAATAAGAAACACCTTCCATGGGAATACCAATATATCTGTTACTGTCCAATGTCTATTTTTCAGCTCAAATCCTCATGATTTTGTTTAGTTCTAATTTATCTGTTCATATCTTTGTACAGGAATATTTTTTCTGGTCAGCCTACAGAGACAAGTTCTGGCAAGGAAGCATGTCAGTAGATAAGAGTTGGATGCGCATGAGTAGGGCAACTGCAGAGTGGCAAAAAGGGTTG CAGGAATTTTTAAATTTTGCATTTCAAGATGATAATCCTGGGGATAATGCCCCCTGTCCATGTAGAAGATGCCTTAATGTGGTACACAAAACACGCTCCGAAGTGCAAAGTGACTTGCTAAGGAATGGATTCGATGAAAGTTACATACAGTGGGTTTACCACGGTGAAGATTCAGATGATGACAATGTCACGGGAAGATTCAGAAGAACGTAAGGAAAGGGAAATGCTACGGGAGGATATTCTCAAAATGATTACTACGCAAAGCGTAGCATCGGAACAACAGTCTGATCTGGCAATAGATTGTCCAACTGAGAATAGAGAACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTTTTTAACAGCGCTAATTTGCAAGGAACAACAAGTACTACCCGGCAAAATATTTCTTCACAACATCTTAGGAATGTTGCTAGAAATTTTGTACGGTCCCGAACTGATCAGGCCAGAGGAGAAAATGGAAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTTGGTGTAGCATCCAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAAACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAAACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAATTTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTC ]
[+] EMBL AK108433 [ TACACAATTTCTTTTTTCACGGTCTAGCCAAATTTCCCAATCCGTCGGCGCTCACCGCCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTCATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCAACATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGAT GGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGCACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGTAATTAAATTGAGTTATTGGAGAAGATAGAGAGAAATCAGACTGGAAGACATGAT ]
[+] EMBL CB638467 [ AATTTCCCAATCCGTCGGCGCTCACCGTCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTCATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCAACATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCA ATGGGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGAACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCA ]
[-] EMBL CB659443 [ TGTCAGTAGATAGGAGTTGGATGCGCATGAGTAGGGCAACTGCAGAGTGGCAAAAAGGGTTGNCAGGAATTTTTAAATTTTGCATTTCAAGATGATAATCCTGGGGATAATGCCCCCTGTCCATGTAGAAGATGCCTTAATGTGGTGCACAAAACACGCTCCGAAGTGCAAAGTGACTTGCTAAGGAATGGATTCGATGAAAGTTACATACAGTGGGTTTACCACGGTGAAGATTCAGATGATGACAATGTCACGGGAAGATTCAGAAGAACGTAAGGAAAGGGAAATGCTACGGGAGGATATTCTCAAAATGATTACTACGCAAAGCGTAGCATCGGAACAACAGTCTGATCTGGCAATAGATTGTCCAACTGAGAATAGAGAACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTTTTTAACGGCGCTAATTTGCAAGGAACAACAAGTACTACCCGGCAAAATATTTCTTCACAACATCTTAGGAATGTTGCTAGAAATTTTGTACGGTCCCGAACTGATCAGGCCAGAGGAGAAAATGGAAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTTGGTGTAGCATCCAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAAACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAAACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAATTTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTCT ]
[-] EMBL CB638454 [ GCTACGGGAGGATATTCTCAAAATGATTACTACGCAAAGCGTAGCATCGGAACAACAGTCTGATCTGGCAATAGATTGTCCAACTGAGAATAGAGAACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTTTTTAACAGCGCTAATTTGCAAGGAACAACAAGTACTACCCGGCAAAATATTTCTTCACAACATCTTAGGAATGTTGCTAGAAATTTTGTACGGTCCCGAACTGATCAGGCCAGAGGAGAAAATGGAAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTTGGTGTAGCATCCAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAAACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAAACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAATTTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTtct]
consensusID : consensus_11856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1627 fasta sequence
[AGTATACTTGACTTATGGCAAGCTACTCATATGAGGAATGGTGAATGGTCGAACATTGCATCAAAGGATGTCTATGAAAATGCACACAATGAGATCAGTGAGAGAGAAGCAGATACAGGAAATGCAATAACAAATGAAGAGCAAAACATTGTTTTCCAAGCATGCTATAGGGACTCTACAGGTTGTAAAACATCTCAAGCTCGTGGACAAGGTTACATGGCTAAACCTCTAACCACTACAGCAATGTTGCATGCTAAATTGGATGAACAAGCTCATGTAACTTCTGAAACCCAGCAACAGAATGATAAGCTCTCTTCTGAGGTTGAGGAGTTGAAAGCAAAACTTGCAGCTCGAGAAGAAGAAAGTGATAAGGCACTTCAAGCAGGGCGCAATGAAAGGCTTCGATTTGAACAAGAAGAACGGAATGCAAGGCTTAAAATGCAAGAAGAAGGACGTAAGGAAAGGGAAATGCTACGGGAGGATATTCTCAAAATGATTACTACGCAAAGCGTAGCATCGGAACAACAGTCTGATCTGACAATAGATTGTCCAACTGAGAATAGAGAACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTTTTTAACAACGCTNATTTGCAAGGACAACAAGTACTACCCGGCAAAATATTTCTTCACAACATCTTAAGAATGNTGCTAGAAAATTTGTACNGTCCCGAACTGATCAGGCCAGAGGAGAAAAATGGNAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTTGGTGTAGCATCCAGGTAATGATCTGGTACTTTTGCTACTTAACTCATTGGATTGTATTAGTATTTGGCACGTCCCCTTTGCTGACAAAAACAGTTGCCTGTTTAGTTTATTAGTATATGGGGCATCTAAGCTTCTGTTACTGCCCCATAGGCCTTTGTTTTGTTTATCTGAGCTAACTAAGATAAGCATGCAT-NCATATAAATGATTAGCAACACAGTACTATATATAGCCACCACATATGTAACAAAGCATATATATTTCAGTGGGGNTTACAAGTCAGTAAATACCANGGGGCATGGCNTAAAAAATGTCAGATATAGTGAGCACTAATCACATTTGTTTATGTTTCCATCAATCCAAAGAACACACATGTCCATACAGTGGCATGATAGTTATGGCATATGACTTCTAACTCAATTTAATCATGTTAGATACTAAAATTAGTTGCACTGCAGACTCTGGCAATGTCCTTTATTTGAAGAAATTATGAAGTTTTGGTAACTATACATGCTAGCAGAAAACTAGATAAAATAGCTCTGCATTTTACATGGTGACTTTCTTTACTTTAAATACGACTTGTAACTATATGTCCATACATTTGTACAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAAACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAAACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAATTTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTCTTATTCGCGGAAAAA]
[+] EMBL CA766746 [AGTATACTTGACTTATGGCAAGCTACTCATATGAGGAATGGTGAATGGTCGAACATTGCATCAAAGGATGTCTATGAAAATGCACACAATGAGATCAGTGAGAGAGAAGCAGATACAGGAAATGCAATAACAAATGAAGAGCAAAACATTGTTTTCCAAGCATGCTATAGGGACTCTACAGGTTGTAAAACATCTCAAGCTCGTGGACAAGGTTACATGGCTAAACCTCTAACCACTACAGCAATGTTGCATGCTAAATTGGATGAACAAGCTCATGTAACTTCTGAAACCCAGCAACAGAATGATAAGCTCTCTTCTGAGGTTGAGGAGTTGAAAGCAAAACTTGCAGCTCGAGAAGAAGAAAGTGATAAGGCACTTCAAGCAGGGCGCAATGAAAGGCTTCGATTTGAACAAGAAGAACGGAATGCAAGGCTTAAAATGCAAGAAGAAGGACGTAAGGAAAGGGAAATGCTACGGGAGGATATTCTCAAAATGATTACTACGCAAAGCGTAGCATCGGAACAACAGTCTGATCTGACAATAGATTGTCCAACTGAGAATAGAGAACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTTTTTAACAACGCTNATTTGCAAGGACAACAAGTACTACCCGGCAAAATATTTCTTCACAACATCTTAAGAATGNTGCTAGAAAATTTGTACNGTCCCGAACTGATCAGGCCAGAGGAGAAAAATGGNAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTT ]
[+] EMBL C27586 [ aCAGGCCAGAGGAG AAAATGGAAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTTGGTGTAGCATCCAGGTAATGATCTGGTACTTTTGCTACTTAACTCATTGGATTGTATTAGTATTTGGCACGTCCCCTTTGCTGACAAAAACAGTTGCCTGTTTAGTTTATTAGTATATGGGGCATCTAAGCTTCTGTTACTGCCCCATAGGCCTTTGTTTTGTTTATCTGAGCTAACTAAGATAAGCATGCAT NCATATAAATGATTAGCAACACAGTACTATATATAGCCACCACATATGTAACAAAGCATATATATTTCAGTGGGGNTTACAAGTCAGTAAATACCANGGGGCATGGCNTAA ]
[+] EMBL AU085747 [ TGCCCCATAGGCCTTTGTTTTGTTTATCTGAGCTAACTAAGATAAGCATGCATGCCATATAAATGATTAGCAACACAGTACTATATATAGCCACCACATATGTAACAAAGCATATATATTTCAGTGGGTCTCACAAGTCAGTAAATAACA GGGGCATGGCTTAAAAAATGTCAGATATAGTGAGCACTAATCACATTTGTTTATGTTTCCATCAATCCAAAGAACACACATGTCCATACAGTGGCATGATAGTTATGGCATATGACTTCTAACTCAATTTAATCATGTTAGATACTAAAATTAGTTGCACTGCAGACTCTGGCAATGTCCTTTATTTGAAGAAATTATGAAGTTTTGGTAACTATACATGCTAGCAGAAAACTAGATAAAATAGCTCTGCATTTTACATGGTGACTTTCTTTACTTTAAATACGACTTGTAACTATATGTCCATACATTTGTACAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAAACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAAACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAATTTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTCTTATTCGCGGAAAAA]
consensusID : consensus_11856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence
[AATCCGTCGGCGCTCACCGCCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTCATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCAACATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGATGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGCACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGAATATTTTTTCTGGTCAGCCTACAGAGACAAGTTCTGGCAAGGAAGCATGTCAGTAGATAGGAGTTGGATGCGCATGAGTAGGGCAACTGCAGAGTGGCAAAAAGGGTTGCAGGAATTTTTAAATTTTGCATTTCAAGATGATAATCCTGGGGATAATGCC]
[+] EMBL CB659442 [AATCCGTCGGCGCTCACCGCCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTCATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCAACATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGATGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGCACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGAATATTTTTTCTGGTCAGCCTACAGAGACAAGTTCTGGCAAGGAAGCATGTCAGTAGATAGGAGTTGGATGCGCATGAGTAGGGCAACTGCAGAGTGGCAAAAAGGGTTGCAGGAATTTTTAAATTTTGCATTTCAAGATGATAATCCTGGGGATAATGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11856#0 CGAATACACAATTTCTTTTTTCACGGTCTAGCCAAATTTCCCAATCCGTCGGCGCTCACC 60
consensus_11856#2 ------------------------------------------AATCCGTCGGCGCTCACC 18
consensus_11856#1 ------------------------------------------------------------
consensus_11856#0 GTCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTC 120
consensus_11856#2 GCCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTC 78
consensus_11856#1 ------------------------------------------------------------
consensus_11856#0 ATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCAACATGCCGGAGATG 180
consensus_11856#2 ATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCAACATGCCGGAGATG 138
consensus_11856#1 ------------------------------------------------------------
consensus_11856#0 TGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGAC 240
consensus_11856#2 TGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGAC 198
consensus_11856#1 ------------------------------------------------------------
consensus_11856#0 GAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAA 300
consensus_11856#2 GAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAA 258
consensus_11856#1 ------------------------------------------------------------
consensus_11856#0 GGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGA 360
consensus_11856#2 GGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGA 318
consensus_11856#1 ------------------------------------------------------------
consensus_11856#0 GGATGTCGCTTGCTGCAGATGGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGAACGC 420
consensus_11856#2 GGATGTCGCTTGCTGCAGATGGGGGG-TCGGCCGCGGCGCCATCGATGGAAGTTGCACGC 377
consensus_11856#1 ------------------------------------------------------------
consensus_11856#0 AGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTA 480
consensus_11856#2 AGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTA 437
consensus_11856#1 ------------------------------------------------------------
consensus_11856#0 TCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCAC 540
consensus_11856#2 TCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCAC 497
consensus_11856#1 ----AGTATACTTGACTTATGGCAAGCTACTCATATGAGGAATGGTGAATGGTCGAACAT 56
* ** * * * ** * * * * ** * **
consensus_11856#0 TGCCTCCACCGCCGGACGCCCTATGCCATCGC-CACCACACTACCACGTAGGCCAGGGCA 599
consensus_11856#2 TGCCTCCACCGCCGGACGCCCTATGCCATCGC-CACCACACTACCACGTAGGCCAGGGCA 556
consensus_11856#1 TGCATCAAA----GGATGTC-TATGAAAATGCACACAATGAGATCAGTGAGAGAGAAGCA 111
*** ** * *** * * **** * ** *** * * ** ** ***
consensus_11856#0 CAAAGCTGCCATCCAATGGGTTGTGGAGGTAATTAAATTGAGTTATTGGAGAAG-ATAGA 658
consensus_11856#2 CAAAGCTGCCATCCAATGGGTTGTGGAGGAA--TATTTTTTCTGGTCAGCCTAC-AGAGA 613
consensus_11856#1 GATACAGGAAATGCAATAACAAATGAAGAGCAAAACATTGTTTTCCAAGCATGCTATAGG 171
* * * ** **** ** ** * ** * * * **
consensus_11856#0 GAGAAATCAGACTGGAAGACATGATTTATTTTTTTTACTAGTGCTATTGATTTCCCAGGC 718
consensus_11856#2 CA-AGTTCTGGCAAGGAAGCATG-------TCAGTAGATAGGA--GTTGGATGCGCATGA 663
consensus_11856#1 GACTCTACAGGTTGTAAAACATC--TCAAGCTCGTGGACAAGGTTACATGGCTAAACCTC 229
* * * * *** * *
consensus_11856#0 ATAAATTCATATTATTTTTGTATACATATATAGACGTATCCCGTATCCATGTTTTTCAGA 778
consensus_11856#2 GTAGGGCAACTGCAGAGTGGCAAAAAGGGTTGCAGGAATTTTTAAATTTTGCATTTC--A 721
consensus_11856#1 TAACCACTACAGCAATGTTGCATGCTAAATTGGATGAA---CAAGCTCATGTAACTTCTG 286
* * * * * * * * * * ** *
consensus_11856#0 AAATGATGTATCCTATCCATATCCGTATCCCTGTATCTCGGTAACATAGAGCAAAGGATG 838
consensus_11856#2 AGATGATA-ATCCTGGGGATAATGCC---------------------------------- 746
consensus_11856#1 AAACCCAGCAACAGAATGATAAGCTCTCTTCTGAGGTTGAGGAGTTGAAAGCAAAACTTG 346
* * * * ***
consensus_11856#0 TTGCTTGCTGCAGATGGGGTGACGGCCGCAGCGGCAGCGACAGTGAGTAGTTTAGAACTT 898
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 CAGCTCG----AGAAGAAGAAAGTGATAAGGCACTTCAAGCAGGGCGCAATGAAAGGCTT 402
consensus_11856#0 CAGATTAGCTATCTTAGTAGGCAAGCAGAGCAGGCAGGGCGAGCATTGCTAGCGTAGAAT 958
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 CGATTTGAACAAGAAGAACGGAATGCAAGGCTTAAAATGCAAGAAGAAGGA-CGTAAGGA 461
consensus_11856#0 AGCTCAGATGAGTTATGTTTGTTTCTGAATTTCTGTCTTTGTTTCTGAATTTCTGTCTCC 1018
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 AAGGGAAATGCTACGGGAGGATATTC---TCAAAATGATTACTACGCAAAGCGTAGCATC 518
consensus_11856#0 CACAAGGTTACCTTGGTTATACTGCACAATATCCAAATTTGCTATACACGGTCTCTCATA 1078
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 -GGAACAACAGTCTGATCTGACAATAGATTGTCCAA-----CTGAGAATAGAGAACCACA 572
consensus_11856#0 TTTATTAATTTCTTCAGTTTGTCCAATTTCTCATATGAATTTTGAAAAATAAGAAACACC 1138
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 TGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTTTTTAA 632
consensus_11856#0 TTCCATGGGAATACCAATATATCTGTTACTGTCCAATGTCTATTTTTCAGCTCAAATCCT 1198
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 CAACGCTNATTTGCAAGGACAACAAGTACTACCCGGCAAA-ATATTTCTTCACAACATCT 691
consensus_11856#0 CATGATTTTGTTTAGTTCTAATTTATCTGTTCATATCTTTGTACAGGAATATTTTTTCTG 1258
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 TAAGAAT------GNTGCTAGAAAATTTGTACN-------GTCCCGAACTGATCAGGCCA 738
consensus_11856#0 GTCAGCCTACAGAGACAAGTTCTGGCAAGGAAGCATGTCAGT-AGATAAGAGTTGGATGC 1317
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 GA-GGAGAAAAATGGNAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTTGGTGT 797
consensus_11856#0 GCATGAGTAGGGCAACTGCAGAGTGGCAAAAAGGGTTGCAGGAATTTTTAAATTTTGCAT 1377
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 --AGCATCCAGGTAATGATCTGGTACTTTTGCTACTTAACTCATTGGATTGTATTAGTAT 855
consensus_11856#0 TTCAAGATGATAATCCTGGGGATAATGCCCCCTGTCCATGTAGAAGATGCCTTAATGTGG 1437
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 TT-GGCACGTCCCCTTTGCTGACAAAAACAGTTGCCTGTTTAGTTTATTAGTATATGGGG 914
consensus_11856#0 TACACAAAACACGCTCCGAAGTGCAAAGTGACTTGCTAAGGAATGGATTCGATGAAAGTT 1497
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 CATCTAAGCTTCTGTTACTGCCCCATAGGCCTTTGTTTTG--------TTTATCTGAGCT 966
consensus_11856#0 ACATACAGTGGGTTTACCACGGTGAAGATTCAGATGATGACAATGTCACGGGAAGATTCA 1557
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 AACTAAGATAAGCATGCATNCATATAAATGATTAGCAACACAGTACTATATATAGCCACC 1026
consensus_11856#0 GAAGAACGTAAGGAAAGGGAAATGCTACGGGAGGATATTCTCAAAATGATTACTAC-GCA 1616
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 ACATA-TGTAACAAAGCATATATATTTCAGTGGGG--NTTACAAGTCAGTAAATACCANG 1083
consensus_11856#0 AAGCGTAGCATCGGAACAACAGTCTGATCTGGCAATAGATTGTCCAACTGAGAATAGAGA 1676
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 GGGCATGGCNT---AAAAAATGTCAGATATAGTGAGCACTAATCACATTTGTTTATGTTT 1140
consensus_11856#0 ACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACT 1736
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 CCATCAATCCAAAGAACACACATGTCCATACAGT-GGCATGATAGTTATGGCATATGACT 1199
consensus_11856#0 TTTTAACAGCGCTAATT-TGCAAGGAACAACAAGTA-CTACCCGGCAAAATATTTCTTCA 1794
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 TCTAACTCAATTTAATCATGTTAGATACTAAAATTAGTTGCACTGCAGACTCTGGCAATG 1259
consensus_11856#0 CAACATCTTAGGAATGTTGCTAGAAATTTTGTACGGTCCCGAACTG--ATCAGGCCAGAG 1852
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 TCCTTTATTTGAAGAAATTATGAAGTTTTGGTAACTATACATGCTAGCAGAAAACTAGAT 1319
consensus_11856#0 GAGAAAATGGAAGAATGAATGAAAGAAATATCT-------AAAT-CAGCTCGGGGTTTGG 1904
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 AAAATAGCTCTGCATTTTACATGGTGACTTTCTTTACTTTAAATACGACTTGTAACTATA 1379
consensus_11856#0 TGTA---GCATC----CAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAA 1957
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 TGTCCATACATTTGTACAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAA 1439
consensus_11856#0 ACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAA 2017
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 ACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAA 1499
consensus_11856#0 ACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAAT 2077
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 ACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAAT 1559
consensus_11856#0 TTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTCTT----- 2132
consensus_11856#2 ------------------------------------------------------------
consensus_11856#1 TTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTCTTATTCG 1619
consensus_11856#0 --------
consensus_11856#2 --------
consensus_11856#1 CGGAAAAA 1627
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||