cluster # 11917

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Oryza sativa
cluster # 11917 cluster # 11917 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11917#0 length = 712 sequences # 8

consensus_11917#1 length = 436 sequences # 1

consensusID : consensus_11917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 712
fasta sequence

                              [AAGTGATGGTCTTTTTGACAATGTGTATGAGCAAGAAGTAGCCACCATGGTCTCGAAATCTTTACAAGCCGATCTCAAACCAACGGAGATTGCTGAACACCTGGCTGCCAAGG-CGCAGGAAGTTGGTAGATC-TGCAGCCGGAAGTACCCCATTCTCAGATGCCGCTCTTGCAGTGGGGTACCTGGGTTTCAGCGGGGGCAAACTCGATGACATAGCCGTCGTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACATCCATGATCCATGATGTCCCCCTCT-CAAGTTTGGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAA-GTAT-CTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAA-TTTA-GCA-TTGGAAAGTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGC-ATAGGAAAGGAACATACATTGATTATGTGACATGAAC-TGGAAATTGCCGCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACCTCATTTCACATTAACCTGATGTTTACCCATGGATGCCAAAAAAAAAAAGCCATTAGTACAGAAAAAAAAAA]

[+] EMBL CB683389             [AAGTGATGGTCTTTTTGACAATGTGTATGAGCAAGAAGTAGCCACCATGGTCTCGAAATCTTTACAAGCCGATCTCAAACCAACGGAGATTGCTGAACACCTGGCTGCCAAGG CGCAGGAAGTTGGTAGATC TGCAGCCGGAAGTACCCCATTCTCAGATGCCGCTCTTGCAGTGGGGTACCTGGGTTTCAGCGGGGGCAAACTCGATGACATAGCCGTCGTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACATCCATGATCCATGATGTCCCCCTCT CAAGTTTGGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAA GTAT CTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAA TTTA GCA TTGGAAAGTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGC ATAGGAAAGGAACATACATTGATTATGTGACATGAAC TGGAAATTGCCGCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACCTC                                                                     ]
[+] EMBL CB680595             [AAGTGATGGTCTTTTTGACAATGTGTATGAGCAAGAAGTAGCCACCATGGTCTCGAAATCTTTACAAGCCGATCTCAAACCAACGGAGATTGCTGAACACCTGGCTGCCAAGG CGCAGGAAGTTGGTAGATC TGCAGCCGGAAGTACCCCATTCTCAGATGCCGCTCTTGCAGTGGGGTACCTGGGTTTCAGCGGGGGCAAACTCGATGACATAGCCGTCGTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACATCCATGATCCATGATGTCCCCCTCT CAAGTTTGGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAA GTAT CTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAA TTTA GCA TTGGAAAGTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGC ATAGGAAAGGAACATACATTGATTATGTGACATGAAC TGGAAA                                                                                                                     ]
[+] EMBL AU030954             [AAGTGATGNTCTTTTTGACAATGTGTATGAGCAAGAAGTAGCCACCATGGTCTCGAAATCTTTACAAGCCGATCTCAAACCAACGGAGATTGCTGAACACCTGGCTGCCAAGG CGCAGGAAGTTGGTAGATC TGCAGCCGGAAGTA CCCATTCTCAGATGCCGCTCTTGCAGTGGGGTNCCTGGGTTTCAGCGGGGGCAAACTCGATGACATAGCCGTCGTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACATCCATGATCCATGATGTCCCCCTCT CAAGTTTGGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAA GTAT CTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAA TTTA GCA TTGGAAAGTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGC ATAGGAAAGGAACATACATTGATTATGTGAaaaa                                                                                                                               ]
[-] EMBL CB652024             [ AGTGATGGTCTTTTTGACAATGTGTATGAGCAAGAAGTAGCCACCATGGTCTCGAAATCTTTACAAGCCGATCTCAAACCAACGGAGATTGCTGAACACCTGGCTGCCAAGG CGCAGGAAGTTGGTAGATC TGCAGCCGGAAGTACCCCATTCTCAGATGCCGCTCTTGCAGTGGGGTACCTGGGTTTCAGCGGGGGCAAACTCGATGACATAGCCGTCGTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACATCCATGATCCATGATGTCCCCCTCT CAAGTTTGGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAA GTAT CTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAA TTTA GCA TTGGAAAGTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGC ATAGGAAAGGAACATAAAAGGATTATGTGACATGANC TGG                                                                                                                        ]
[+] EMBL AU095538             [                                                                                                              AGGNCGCAGGAAGTTGGTAGATCTTGCAGCCGGAAGTNCCCCATTCTCAGATGCCGNTCTTGCAGTGGGGTACCTGGGTTTCAGCGGGGGNAAACTCGATGACATAGCCGTCGTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACATCCATGATCCATGATGTCCCCCTCTCCAAGTTTGGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAA GTAT CTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAA TTTA GCA TTGGAAAGTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGC ATAGGAAAGGAACATACATTGATTATGTGACATGAAC TGGAAATTGCCGCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACCTCATTTCACATTAACCTGATGTTTACCCATGGATGCCAAAAAAAAAAA                       ]
[+] EMBL BI795705             [                                                                                                                                                                                                                                                                                                                                                                                                              GCGAGGAGCAAGAGGCCATTAACCTGTGTAA GTAT CTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAA TTTA GCA TTGGAAAGTAATATTGTGATCCTTGGCTCGAGTTGTAAACCGGTGGAAGAAATCT CCGTGTGTGTGAGAGACAACCGTGC ATAGGAAAGGAACATAC TTGATTATGTGACATGAAC TGGAAATTGCCGCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACCTCATTTCACATTAACCTGATGTTTACCCATGGATGCCCAAAAAAAAAA                       ]
[+] EMBL BI809417             [                                                                                                                                                                                                                                                                                                                                                                                                                                        TGAAACGTATGCTTTGAGCCGAATTGCTCTCGGGTTTTTGGCTAATTTTACGCATTTGGAAAGTAATATTGTGATCCTTGGCTCGAGTTGTAAACCGGTGGAAGAAATCT CCGTGTGTGTGAGAGACAACCGTGCTATAGGAAAGGAACATACATTGATTATGTGACATGAACTTGGAAATTGCCGCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACCTCATTTCACATTAACCTGATGTTTACCCATGGATGCCAAGATGTTTTAGCCATTAGTACAGAAAAAAAAAA]
[+] EMBL BM038483             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTGGGCTAA TTTA GCA TTGGAAAGTAATATTGTGATCCTTGGCTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGC ATAGGAAAGGAACATACATTGATTATGTGACATGAAC TGGAAATTGCCGCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACCTCATTTCACATTAAaaaaa                                                    ]




>consensus_11917#0
AAGTGATGGTCTTTTTGACAATGTGTATGAGCAAGAAGTAGCCACCATGGTCTCGAAATC
TTTACAAGCCGATCTCAAACCAACGGAGATTGCTGAACACCTGGCTGCCAAGGCGCAGGA
AGTTGGTAGATCTGCAGCCGGAAGTACCCCATTCTCAGATGCCGCTCTTGCAGTGGGGTA
CCTGGGTTTCAGCGGGGGCAAACTCGATGACATAGCCGTCGTCGTGTCCATTGTCAGGAA
ATCTGAAATCTAAATTGTAAAAGACATCCATGATCCATGATGTCCCCCTCTCAAGTTTGG
TTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAA
CCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCT
GTGTAAGTATCTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAATTTAGCATTGGAAAGT
AATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAG
AGACAACCGTGCATAGGAAAGGAACATACATTGATTATGTGACATGAACTGGAAATTGCC
GCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACCTCATTTCACATTAACCTGA
TGTTTACCCATGGATGCCAAAAAAAAAAAGCCATTAGTACAGAAAAAAAAAA

consensusID : consensus_11917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [TGGGTTTCAGCGGGGGCAAACTCNATGACATAGCCCGTCGTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACNTNCCATGATCCATGATNTCCCCCTCTCAAGTTTGGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAAGTATCTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAATTTAGCATTGGAAAGTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGCATAGGAAAGGAACATACATTGATTATGTGACATGAACTGGAAATTGCCGCAAGAAAAAAAAAAA]

[+] EMBL AU055811             [TGGGTTTCAGCGGGGGCAAACTCNATGACATAGCCCGTCGTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACNTNCCATGATCCATGATNTCCCCCTCTCAAGTTTGGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAAGTATCTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAATTTAGCATTGGAAAGTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAGAGACAACCGTGCATAGGAAAGGAACATACATTGATTATGTGACATGAACTGGAAATTGCCGCAAGAAAAAAAAAAA]




>consensus_11917#1
TGGGTTTCAGCGGGGGCAAACTCNATGACATAGCCCGTCGTCGTGTCCATTGTCAGGAAA
TCTGAAATCTAAATTGTAAAAGACNTNCCATGATCCATGATNTCCCCCTCTCAAGTTTGG
TTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAA
CCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCT
GTGTAAGTATCTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAATTTAGCATTGGAAAGT
AATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAG
AGACAACCGTGCATAGGAAAGGAACATACATTGATTATGTGACATGAACTGGAAATTGCC
GCAAGAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11917#0      AAGTGATGGTCTTTTTGACAATGTGTATGAGCAAGAAGTAGCCACCATGGTCTCGAAATC 60
consensus_11917#1      ------------------------------------------------------------
                                                                                   

consensus_11917#0      TTTACAAGCCGATCTCAAACCAACGGAGATTGCTGAACACCTGGCTGCCAAGGCGCAGGA 120
consensus_11917#1      ------------------------------------------------------------
                                                                                   

consensus_11917#0      AGTTGGTAGATCTGCAGCCGGAAGTACCCCATTCTCAGATGCCGCTCTTGCAGTGGGGTA 180
consensus_11917#1      ------------------------------------------------------------
                                                                                   

consensus_11917#0      CCTGGGTTTCAGCGGGGGCAAACTCGATGACATAGCC-GTCGTCGTGTCCATTGTCAGGA 239
consensus_11917#1      --TGGGTTTCAGCGGGGGCAAACTCNATGACATAGCCCGTCGTCGTGTCCATTGTCAGGA 58
                         *********************** *********** **********************

consensus_11917#0      AATCTGAAATCTAAATTGTAAAAGACATCC-ATGATCCATGATGTCCCCCTCTCAAGTTT 298
consensus_11917#1      AATCTGAAATCTAAATTGTAAAAGACNTNCCATGATCCATGATNTCCCCCTCTCAAGTTT 118
                       ************************** * * ************ ****************

consensus_11917#0      GGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTAC 358
consensus_11917#1      GGTTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTAC 178
                       ************************************************************

consensus_11917#0      AACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAAC 418
consensus_11917#1      AACCAGAAGTGCAGCTGCTGAAAAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAAC 238
                       ************************************************************

consensus_11917#0      CTGTGTAAGTATCTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAATTTAGCATTGGAAA 478
consensus_11917#1      CTGTGTAAGTATCTTTGAGCCGAATTGCTCGCGGTTTTTGGGCTAATTTAGCATTGGAAA 298
                       ************************************************************

consensus_11917#0      GTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTG 538
consensus_11917#1      GTAATATTGTGATCCTTGGTTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTG 358
                       ************************************************************

consensus_11917#0      AGAGACAACCGTGCATAGGAAAGGAACATACATTGATTATGTGACATGAACTGGAAATTG 598
consensus_11917#1      AGAGACAACCGTGCATAGGAAAGGAACATACATTGATTATGTGACATGAACTGGAAATTG 418
                       ************************************************************

consensus_11917#0      CCGCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACCTCATTTCACATTAACCT 658
consensus_11917#1      CCGCAAGAAAAAAAAAAA------------------------------------------ 436
                       ******** *                                                  

consensus_11917#0      GATGTTTACCCATGGATGCCAAAAAAAAAAAGCCATTAGTACAGAAAAAAAAAA 712
consensus_11917#1      ------------------------------------------------------