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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 722 fasta sequence
[AGGCGGAGAAAAACACAAGGCTCTCAAGGAGAGAGAGAAAACCC-TAGCTAGCTAGGCGCCGTCGCAACCTT-GCTCCCGTCCGTCC-GTACGTCGGAACGCAGCTATGGCGGCTGTGGCGCTGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC-AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTAACGCCGTTACTTCATGGTATTTTTGGATAGACTGGTGAATAGCCAATACGGTTTCTATAGTTTTGCTCTGTGATCAGTTTAGTCCCTAAAAAAAA]
[+] EMBL AU069150 [AGGCGGAGAAAAACACAAGGCTCTCAAGGAGAGAGAGAAAACCC TAGCTAGCTAGGCGCCGTCGCAACCTT GCTCCCGTCCGTCC GTACGTCGGAACGCAGCTATGGCGGCTGTGGCGCTGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATG ]
[+] EMBL AK064609 [ GGCGGAGAAAAACACAAGGCTCTCAAGGAGAGAGAGAAAACCC TAGCTAGCTAGGCGCCGTCGCAACCTT GCTCCCGTCCGTCC GTACGTCGGAACGCAGCTATGGCGGCTGTGGCGCTGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTT ]
[+] EMBL AU101286 [ ACAAGGCTCTCAAGGAGAGAGAGAAAACCC TAGCTAGCTAGGCGCCGTCGCAACCTT GCTCCCGTCCGTCC GTACGTCGGAACGCAGCTATGGCGGCTGTGGCGCTGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGNCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTCAAGTTATTTTGAAGAAAAT CTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCA CGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATA ]
[+] EMBL AU101287 [ AACCCNAAGCTAGTTAGGCCCCGTNGCAACCTTGGCTCCCGTCCGGCCGGTACGTCGGAACCCAGCTAT GCCGCTGTGGCGTTGCGCTCTCTCGCAAGGAAGCCCATG CCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTAACGCCGTTACTTCATGGTATTTTTGGATAGACTGGTGAATAGCCAATACGGTTTCTATAGTTTTGCTCTGTGATCAGTTTAGTCCCTAAAAAAAA]
[+] EMBL AU181789 [ CTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTAACGCCGTTACTTCATGGTATTTTTGGATAaaaa ]
[+] EMBL CF331752 [ TTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTTTTTTTTTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTTTTTTTTCTTGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTCGTGATGGTTGGTTGG ]
consensusID : consensus_12187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 704 fasta sequence
[AACGCGACGCGT-CTCGGCGAGTGAGAGGAGGAAGCAAACCCTAGCCGCCGTCGCAACCCTACTCTCGTTCGTCCGTACGTCGGTGGCATGGCGGCTATGGCGCTGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGTCATCGCGCTCCCTCCACCACCTCGAGGATAAGCTGCGTGGCACGACATCT-CCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTTCTGC-TTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGTCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGTCTATAATGGCATGTGTTTAATGTGGCATGCATGTGACATGTCTTTATGTAAGACTAATTATCGGTGTAATGTATTGTTGTTGCACTCTAAAAATTGGTACCCTATATATCTGCTGTTTGCAAGTAGATGCTATGAAGTAACGATTTGTTATGGATGATCTGTACGCAACATTACTTAGGGTTTTTGGATGAGCTTAATTAGTTCTGTGTTTATAAAAAA]
[+] EMBL CF326802 [AACGCGACGCGT CTCGGCGAGTGAGAGGAGGAAGCAAACCCTAGCCGCCGTCGCAACCCTACTCTCGTTCGTCCGTACGTCGGTGGCATGGCGGCTATGGCGCTGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGTCATCGCGCTCCCTCCACCACCTCGAGGATAAGCTGCGTGGCACGACATCT CCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTTCTGC TTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGTCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGTCTATAATGGCATGTGTTTAATGTGGCATGCATGTGACATGTCTTTATGTAAGACTAA ]
[+] EMBL CA766643 [ ACGCGT CTCGGCGAGTGAGAGGAGGAAGCAAACCCTAGCCGCCGTCGCAACCCTACTCTCGTTCGTCCGTACGTCGGTGGCATGGCGGCTATGGCGCTGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGTCATCGCGCTCCCTCCACCACCTCGAGGATAAGCTGCGTGGCACGACATCT CCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTGCTGC TTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGCCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGCCTATAATGGCATGTGTTTAATGTGGCATGCATGTGACATGTC TTATGTAAGACTAATTATCGGTGTAATGTATTGTTGTTGCACTCTAAAA ]
[+] EMBL C28100 [ ACG GTCCTCGGCGAGTGAGAGGAGGAAGCAAACCCTAGCCGCCGTCGCAACCCTACTCTCGTTCGTCCGTACGNCNGTGGCATGGCGGCTATGGCGCTGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTNCGNCGGGCGCCGCCGTCATCGCGCTCCCTGCACCACCTCGAGGATAAGCTGCGTGGCACGACATCT CCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTTGTGGCAGGTGCTTCTTTCAGGCTATGCTngt ]
[-] EMBL CF326803 [ GTGGCACGACATCTCCCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTTCTGC TTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGTCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGTCTATAATGGCATGTGTTTAATGTGGCATGCATGTGACATGTCTTTATGTAAGACTAATTATCGGTGTAATGTATTGTTGTTGCACTCTATGCATTGGTACCCTATATATCTGCTGTTTGCAAGTAGATGCTATGAAGTAACGATTTGTTATGGATGATCTGTACGCAACATTACTTAGGGTTTTTGGATGAGCTTAATTAGTTCTGTGTTTATAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12187#0 AGGCGGAGAAAAACACAAGGC-TCTCAAGGAGAGAGAGAAAACCCTAGCTAGCTAGGCGC 59
consensus_12187#1 -----------AACGCGACGCGTCTCGGCGAGTGAGAGGAGGAAGCAAACC-CTAGCCGC 48
*** * * ** **** *** ***** * * **** ***
consensus_12187#0 CGTCGCAACCTTGCTCCCGTCCGTCCGTACGTCGGAACGCAGCTATGGCGGCTGTGGCGC 119
consensus_12187#1 CGTCGCAACCCTACTCTCGTTCGTCCGTACGTCGGT-----GGCATGGCGGCTATGGCGC 103
********** * *** *** ************** * ********* ******
consensus_12187#0 TGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGC 179
consensus_12187#1 TGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGT 163
************ ******* ******** ****** * ******************
consensus_12187#0 CATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCA 239
consensus_12187#1 CATCGCGCTCCCTCCACCACC------TCGAGGATAAGCTGCGTGGCACGACATCTCCCA 217
****************** ** *********************************
consensus_12187#0 AGACTACAGCTCCTACTGATCAAGGTCGAGTCAGTTATTTTGAAGAAAATCCTGAGCTTT 299
consensus_12187#1 AGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTT 277
************** *** * ** * * *** ***** **** **** * * **
consensus_12187#0 TTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGG 359
consensus_12187#1 TTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAG 337
************* ******** *** ******** **** **** ** ** **** *
consensus_12187#0 GTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGA 419
consensus_12187#1 GTTCTGCTTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGA 397
** ********* ** **** ******* ** ** *** *** * *** *** ****
consensus_12187#0 AGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCG--CCAGCTGGTGGCTAC 477
consensus_12187#1 AGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGTCTAGGGGCTAT 457
******* ******** *************** **** ** * * ** * *****
consensus_12187#0 ATATTTCTGTCTCTGTGT-TATCTATGACTCTGCCC-----TGCTTATCATGGCTTGTTT 531
consensus_12187#1 TTATTTCTATTTTTGTGTGTGACTCTGTCTATAATGGCATGTGTTTAATGTGGCATGC-- 515
******* * * ***** * ** ** ** * ** *** **** **
consensus_12187#0 AATGTAACATGGCATTTCCTA---CTAATCATCGATGTGTAACGTACCATCGTACTATAG 588
consensus_12187#1 -ATGTGACATGTCTTTATGTAAGACTAATTATCG--GTGTAATGTATTGTTGTTGCACTC 572
**** ***** * ** ** ***** **** ****** *** * ** *
consensus_12187#0 TTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTA-ACGCCGTTACTTCATGGTAT 647
consensus_12187#1 TAAAAATTGGTACCC-TATATATCTGCTGTTTGCAAGTAGATGCTATGAAGTAACGATTT 631
* * * ** * * * * ** *** **** * ** * * * * * * *
consensus_12187#0 TTT-TGGATAGACTG-GTGAATAGCCAATACGGTTTCTATAGTTTTGCTCTGTGATCAGT 705
consensus_12187#1 GTTATGGATGATCTGTACGCAACATTACTTAGGGTTTT-TGGATGAGCT---TAATTAGT 687
** ***** *** * * * * ** ** * * * * *** * ** ***
consensus_12187#0 TTAGTCCCTAAAAAAAA 722
consensus_12187#1 TCTGTGTTTATAAAAAA 704
* ** ** ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||