These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1929 fasta sequence [AAGGCCACAGCTTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGACGAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAGCTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGCGACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTGCGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCGAGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTGTACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAATGTCGTAGGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAGAGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGG-AACCAAATTTACTATCTATGATGCCCATCCACCTTATGCTGGAGATGTGATTTCAAAGGGTCAGTCTGCACGTGTGATTGGTTCAAACCATTTATCCCCCAGGATACCTGCTGGGAATTATCCAGTCTCACATATTTCATATGAATTGAACGTTTTGGGTTCTAGGGGCCCGAGAAGGATGCACTGCGCTATGGATTCTATCCCTGTATCAGCAATTGAACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGA----TCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACA-TTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCT-GCAACAT-TTGA-GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCA-GGA-TTATGTGTATACTTGTCCCTTT-GGAAATCCATAGATGTATCTGTTTGCATAGATATGTTTATGTTACATTCTTCTATTACCAGAATGAAGCAGAGCTA-TTGGATCTTGTTTCAAAAAAAACATGAAATGTACATGAGACCCTTTTTTTTCACATCGAATAATGTTCTGGCTCAATTGTTCATGGAAAAAAAT] [+] EMBL AK060587 [AAGGCCACAGCTTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAACAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGACGAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAGCTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGCGACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTGCGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCGAGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTGTACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAATGTCGTAGGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAGAGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGG AACCAAATTTACTATCTATGATGCCCATCCACCTTATGCTGGAGATGTGATTTCAAAGGGTCAGTCTGCACGTGTGATTGGTTCAAACCATTTATCCCCCAGGATACCTGCTGGGAATTATCCAGTCTCACATATTTCATATGAATTGAACGTTTTGGGTTCTAGGGGCCCGAGAAGGATGCACTGCGCTATGGATTCTATCCCTGTATCAGCAATTGAACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGA TCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACA TTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCT GCAACAT TTGA GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCA GGA TTATGTGTATACTTGTCCCTTT GGAAATCCATAGATGTATCTGTTTGCATAGATATGCTTATGTTACATTCTTCTATTACCAGAATGAAGCAGAGCTA TTGGATCTTGTTTCAAAAAAAACATGAAATGTACATGAGACCCTTTTTTTTCACATCGAATAATGTTCTGGCTCAATTGTTCATGGAAAAAAAT] [+] EMBL AU068695 [ CACAGCTTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTTGCGGCGGCGGCGGAGGAGCCGCGGAACGAGTCGTCGNCGGCGG ] [+] EMBL CB676460 [ TTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGACGAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAGCTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGCGACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTGCGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCGAGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTGTACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAATGTCGTAAGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAGAGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGGAAACCAAATTTACTATCT ] [+] EMBL AK071159 [ TGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGACGAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAGCTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGCGACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTGCGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCGAGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTGTACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAATGTCGTAGGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAGAGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGG AACCAAATTTACTATCTATGATGCCCATCCACCTTATGCTGGAGATGTGATTTCAAAGGGTCAGTCTGCACGTGTGATTGGTTCAAACCATTTATCCCCCAGGATACCTGCTGGGAATTATCCAGTCTCACATATTTCATATGAATTGAACGTTTTGGGTTCTAGGGGCCCGAGAAGGATGCACTGCGCTATGGATTCTATCCCTGTATCAGCAATTGAACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGA TCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACA TTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCT GCAACAT TTGA GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAA ] [+] EMBL CA765962 [ AACAGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCCTCCATGATATCTCGAATGAACCGTTTCCTGATCACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGG AGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTACATCTAACA TTTTAGTTGGATAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCT GCAACAT TTGA GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCA GGA TTATGTGTATACTTGTCCCTTT GGAAATCCATAGATGTATCTGTTTGCATAGATATGTTTATGNTACATTCTTCTATTACCAGAATGAAGCAGAGCTATTTGGATCTTG ] [+] EMBL BQ907687 [ TTCCATGATATCTCGAATGAACCGTTTCCTGATCACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGG AGCAT CAGAATAGAGACATAAATAAAAGTTGCTTTACATCTAACACTTTTAGTTGGATAGGGATATGTAACCTGCCATTTAGCTTTCTTGAAGTATGTTCAACCT GCAACAT TTGA GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCAC ATTGACAGCTCA GGA TTATGTGTATACTTGTCCCTTT GGAAATCCATAGATGTATCTGTTTGCATAGATATGTTTATGTTACATTCTTCTATTACCAGAATGAA CAGAGCTA TTGGATCTTGTTTC AAAAATCATGAAAaaaa ] [+] EMBL BI811483 [ tcTCAACCTCGCAACATCTTGACGTGACTTGTAAGTCCTGAGTTAAACTACAGGTGTTGGATAACCACATTTGACAGCTCACGGACTTATGTGTATACTTGTCCCTTTCGGAAATCCATAGATGTATCTGTTTGCATAaaaa ] consensusID : consensus_12269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 911 fasta sequence [CCATTCTCGCACAAGATTCCATCTTTTCATCCACCATATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTACGAGGAGGAGGAGGAGGAGAAGATTATGTGATGTCTTTCATGAGCGTGATTCAAGAGGTGAATGGCGAGATCCGCGCTATTTGTCGAGAGTGGTTCAGGTTGTGGCCGGAGCGAGTTCGGCGTGTGTTTTGTGCTGCATATTGACCGACAGACTATGTCGTTTGTAGCTGGTCTGAGTAATCTGGAGAGCTGTTGGATGCTGTTGTAACGGTGCTCTTGTTGGATGGGCTAGTATATGTGGAGGAATTGGTAGGTATGTGGCTGGTGTTCGATGGTGTGGGCAAGTGTCTTGATATGCATTCTGATAAGGTATTGATATGGAATTATTGTGTTCTCAAATTGTCATGGAGATTATTTTGTATATGTTTCGTTACCTGTAGTTGGATGAATTGTTATGTTCGTATTGTGAGTATAGTATTTTCTATTGGTGTGTATGAAGTGTGTAAGCGAGGGTGTTGAGGGTTGTTCTGGATCTGGTGGCTGTGTGTGATAATTCTTGGGAAGATTTAGAATATATTTTATCAATCATCTTATTGTGTTATATGTTTTTAGTGTAGCTGGTGTAAAATATGATGCTATGCTGATATGAGAATGTATTAGATGTGAGAATGTTGTTTTGTAATATTAGTATGTAGAAGTGATATTATTGAGATTGTTGATTTAGTATTGTATATTGTGTGAAATATATGGATTAGTCAATATATTGGTAGTTAGAATACTTGTGGCGGAAATAAATGAGTTGAAGTAGTAGTTGGTATCTACGGATATGATTC] [+] EMBL AW154983 [CCATTCTCGCACAAGATTCCATCTTTTCATCCACCATATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTACGAGGAGGAGGAGGAGGAGAAGATTATGTGATGTCTTTCATGAGCGTGATTCAAGAGGTGAATGGCGAGATCCGCGCTATTTGTCGAGAGTGGTTCAGGTTGTGGCCGGAGCGAGTTCGGCGTGTGTTTTGTGCTGCATATTGACCGACAGACTATGTCGTTTGTAGCTGGTCTGAGTAATCTGGAGAGCTGTTGGATGCTGTTGTAACGGTGCTCTTGTTGGATGGGCTAGTATATGTGGAGGAATTGGTAGGTATGTGGCTGGTGTTCGATGGTGTGGGCAAGTGTCTTGATATGCATTCTGATAAGGTATTGATATGGAATTATTGTGTTCTCAAATTGTCATGGAGATTATTTTGTATATGTTTCGTTACCTGTAGTTGGATGAATTGTTATGTTCGTATTGTGAGTATAGTATTTTCTATTGGTGTGTATGAAGTGTGTAAGCGAGGGTGTTGAGGGTTGTTCTGGATCTGGTGGCTGTGTGTGATAATTCTTGGGAAGATTTAGAATATATTTTATCAATCATCTTATTGTGTTATATGTTTTTAGTGTAGCTGGTGTAAAATATGATGCTATGCTGATATGAGAATGTATTAGATGTGAGAATGTTGTTTTGTAATATTAGTATGTAGAAGTGATATTATTGAGATTGTTGATTTAGTATTGTATATTGTGTGAAATATATGGATTAGTCAATATATTGGTAGTTAGAATACTTGTGGCGGAAATAAATGAGTTGAAGTAGTAGTTGGTATCTACGGATATGATTC] consensusID : consensus_12269#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence [ACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGATCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACATTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTAGGGAATCCATAGATGTATCTGTTTGCATAAAAAAATTAAAAGA] [-] EMBL CB676461 [ACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGATCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACATTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTAGGGAATCCATAGATGTATCTGTTTGCATAAAAAAATTAAAAGA] consensusID : consensus_12269#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [CTGGCCATGCNCTNTGNTTAGTTGCTTCCCCCTTTTGGAAGCATGCAGAATAAAGACATAAATAAAAGTTGCTTTAAATCTAACATTTTAGTTGGGTAGGGANATGTAACCTGCAATTTAGCTTTNTTNAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCNCAATTGACAGCTCNAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU166730 [CTGGCCATGCNCTNTGNTTAGTTGCTTCCCCCTTTTGGAAGCATGCAGAATAAAGACATAAATAAAAGTTGCTTTAAATCTAACATTTTAGTTGGGTAGGGANATGTAACCTGCAATTTAGCTTTNTTNAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCNCAATTGACAGCTCNAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 AAGGCCACAGCTTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCAT 60 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 CCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCT 120 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 CCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTG 180 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATG 240 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGG 300 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGAC 360 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 GAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAG 420 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 CTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGC 480 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 GACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTG 540 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 CGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCG 600 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 AGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTG 660 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAA 720 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TGTCGTAGGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAG 780 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 AGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGGAACCAAATTTACTATC 840 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TATGATGCCCATCCACCTTATGCTGGAGATGTGATTTCAAAGGGTCAGTCTGCACGTGTG 900 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 ATTGGTTCAAACCATTTATCCCCCAGGATACCTGCTGGGAATTATCCAGTCTCACATATT 960 consensus_12269#1 -----------------------------CCATTCTCGCACAAGATTCCATCTTTTCATC 31 consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TCATATGAATTGAACGTTTTGGGTTCTAGGGGCCCGAGAAGGATGCACTGCGCTATGGAT 1020 consensus_12269#1 CACCATATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGA 91 consensus_12269#2 -----------------------ACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCT 37 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TCTATCCCTGTATCAGCAATTGAACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCT 1080 consensus_12269#1 AATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTACGAGGAGGAGGAG 151 consensus_12269#2 TTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGC- 96 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGC- 1139 consensus_12269#1 GAGGAGAAGATTATGTGATGTCTTTCATGAGCGTGATTCAAGAGGTGAATGGCGAGATCC 211 consensus_12269#2 GAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGT-TGAAGAACA 155 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 GAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGT-TGAAGAACA 1198 consensus_12269#1 GCGCTATTTGTCGAGAGTGGTTCAGGTTGTGGCCGGAGCGAGTTCGGCGTGTGTTTTGTG 271 consensus_12269#2 AGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAA 215 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 AGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAA 1258 consensus_12269#1 CTGCATATTGACCGACAGACTATGTCGTTTGTAGCTGGTCTGAGTAATCTGGAGAGCTGT 331 consensus_12269#2 CGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAG---ATGAGAGTAACCCAACCA 272 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 CGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAG---ATGAGAGTAACCCAACCA 1315 consensus_12269#1 TGGATGCTGTTGTAACGGTGCTCTTGTTGGATGGGCTAGTATATGTGGAGGAATTGGTAG 391 consensus_12269#2 AC------CAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGT 326 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 AC------CAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGT 1369 consensus_12269#1 GTATGTGGCTGGTGTTCGATGGTGTGGGCAAGTGTCTTGATATGCATTCTGATAAGGTAT 451 consensus_12269#2 TCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCA 386 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCA 1429 consensus_12269#1 TGATATGGAATTATTGTGTTCTCAAATTGTCATGGAGATTATTTTGTATATGTTTCGTTA 511 consensus_12269#2 GCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGATCGA 446 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 GCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGATCGA 1489 consensus_12269#1 CCTGTAGTTGGATGAATTGTTATGTTCGTATTGTGAGTATAGTATTTTCTATTGGTGTGT 571 consensus_12269#2 ATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTC 506 consensus_12269#3 --------------------------------CTGGCCATGCNCTNTGNTTAGTTGCTTC 28 consensus_12269#0 ATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTC 1549 consensus_12269#1 ATGAAGTGTG---TAAGCGAGGGTGTTGAGGGTTGTTCTGGATCTGGTGGCTGTGTGTGA 628 ** * * ** ** * consensus_12269#2 CACCTTTTGGAAGCATGCAGAATAGAGAC-ATAAATAAAA--GTTGCTTTAAAT-CTAAC 562 consensus_12269#3 CCCCTTTTGGAAGCATGCAGAATAAAGAC-ATAAATAAAA--GTTGCTTTAAAT-CTAAC 84 consensus_12269#0 CACCTTTTGGAAGCATGCAGAATAGAGAC-ATAAATAAAA--GTTGCTTTAAAT-CTAAC 1605 consensus_12269#1 TAATTCTTGGGAAGATTTAGAATATATTTTATCAATCATCTTATTGTGTTATATGTTTTT 688 * **** * ** ****** * ** *** * *** *** ** * consensus_12269#2 ATTTTAGTTGGGTAGGGATATG----TAACCTGCAATTTAGCTTTCTTGAA-----GTAT 613 consensus_12269#3 ATTTTAGTTGGGTAGGGANATG----TAACCTGCAATTTAGCTTTNTTNAA-----GTAT 135 consensus_12269#0 ATTTTAGTTGGGTAGGGATATG----TAACCTGCAATTTAGCTTTCTTGAA-----GTAT 1656 consensus_12269#1 AGTGTAGCTGGTGTAAAATATGATGCTATGCTGATATGAGAATGTATTAGATGTGAGAAT 748 * * *** *** * *** ** *** ** * * ** * * ** consensus_12269#2 GTTCAACCTGCAACATTTGAGTG---ACTTGTAAGTCTTGAGTTTAACTACA-GGTGTTG 669 consensus_12269#3 GTTCAACCTGCAACATTTGAGTG---ACTTGTAAGTCTTGAGTTTAACTACA-GGTGTTG 191 consensus_12269#0 GTTCAACCTGCAACATTTGAGTG---ACTTGTAAGTCTTGAGTTTAACTACA-GGTGTTG 1712 consensus_12269#1 GTT-GTTTTGTAATATTAGTATGTAGAAGTGATATTATTGAGATTGTTGATTTAGTATTG 807 *** ** ** *** * ** * ** * * ***** ** * ** *** consensus_12269#2 GATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTAGGGAATCCATAGA 729 consensus_12269#3 GATAACCNCAATTGACAGCTCNAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 240 consensus_12269#0 GATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTTGGAAATCCATAGA 1772 consensus_12269#1 TATA---TTGTGTGAAATATATGGATTAGTCAATATATTGGTAGTTAGAATACTTGTGGC 864 *** *** * * * * consensus_12269#2 TGTATCTGTTTGCATAAAAAAATTAAAAGA------------------------------ 759 consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 TGTATCTGTTTGCATAGATATGTTTATGTTACATTCTTCTATTACCAGAATGAAGCAGAG 1832 consensus_12269#1 GGAAATAAATGAGTTGAAGTAGTAGTTGGTATCTACGGATATGATTC------------- 911 consensus_12269#2 ------------------------------------------------------------ consensus_12269#3 ------------------------------------------------------------ consensus_12269#0 CTATTGGATCTTGTTTCAAAAAAAACATGAAATGTACATGAGACCCTTTTTTTTCACATC 1892 consensus_12269#1 ------------------------------------------------------------ consensus_12269#2 ------------------------------------- consensus_12269#3 ------------------------------------- consensus_12269#0 GAATAATGTTCTGGCTCAATTGTTCATGGAAAAAAAT 1929 consensus_12269#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||