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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1051 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGAGTAGCCGCAGCGGAAGCGGACAGCAGCATCACAATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCTACGCTCTTGCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGG---G---GTCGTCG---TCGTCGTCGGGCCCTCTCTACCCGACGCCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACT-GGGGAAAACAGCGAGGTATTTCAAGAATTTGGGTACTCTTGGGTTCTGGTCCCAGTTGGTGTCCACAGTTGTTTCCGCTGGAATTTTGTCATTTTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTG-CCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAG-ACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTT-AAAAAAATCTAGCTTTCA-TGCGTAAAAAAAAAA]
[+] EMBL AK109387 [TTCCTCGAGCACTGTTGGCCTACTGGAGTAGCCGCAGCGGAAGCGGACAGCAGCATCACAATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCTACGCTCTTGCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGG G GTCGTCG TCGTCGTCGGGCCCTCTCTACCCGACGCCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACT GGGGAAAACAGCGAGGTATTTCAAGAATTTGGGTACTCTTGGGTTCTGGTCCCAGTTGGTGTCCACAGTTGTTTCCGCTGGAATTTTGTCATTTTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTG CCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAG ACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTT ]
[+] EMBL AK069783 [ CACAATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCTACGCTCTTGCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGG GGTCGTCGTCG TCGTCGTCGGGCCCTCTCTACCCGACGCCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACT GGGGAAAACAGCGAGGTATTTCAAGAATTTGGGTACTCTTGGGTTCTGGTCCCAGTTGGTGTCCACAGTTGTTTCCGCTGGAATTTTGTCATTTTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTG CCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAG ACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTAAAAAAAATCTAGCT ]
[+] EMBL C26756 [ CCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCNNTNANCGCTCTTGCGGCGGGGGGCGGCTTCTNCTTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGNGCCTCANCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGG G GTCGTCGTCNTCNTCGTCGGGCCCTCTNTACCCGANGNCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACTGGGGGAAAACAGCGAGGTATTTCAAGANTTTGGGTACTCTTGGGTTCTGGTCCCAnt ]
[+] EMBL C26125 [ CTACTCCCAGCGCGGCCGTCGGCGGCGGCGCC CTNACNCTCTTGCGGCGGGGGGCGGCTTCTNCTTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCANCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGGNCTN GTCGTCG TCGTCGTCGGGCCCTCTCTACCCNACGCCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTNAAGAGACT GGGGAAAACAGCGAGGTATTTNAAGAATTTGGGTACTCTTNGGTTCTGGTCCCAATTGG ]
[+] EMBL AU100760 [ TTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTG CCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAG ACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTG TGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTT AAAAAAATCTAGCTTTCA TGCGTAAAAAAAAAA]
[+] EMBL BI806503 [ tgcCTGGTATTGCCCCCGGGTTTTATTTCAGTCTTCT GTCATTGGGTAACATCCGCCTTTCTGAAAGAACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAATTTA AAAAAAATCTAGCTTTCACTGCGTAAAAAAAAAA]
[+] EMBL D42690 [ TCGGCATGCAAGCAACTGTTGGGNCTTTGGTAGCGAA GNTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTNGCTCTAGATGTTTNNCTAGTTCAGGCTTC ]
[+] EMBL AU058381 [ CTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTT NTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGNGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTAAAAAAAATCTAGCTTTCA TGCGTAAAAA ]
consensusID : consensus_12287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[TATTNAAAATAAAAGGGAGGAAACNCTTAAATTTAAGNAATGGGNGGAACNCGGGGTTAATNCANTTTNGGTCATGGAAANNCCCCTTTTGGAAGAGTAGAAAACAGCNAGGGACCTGTNANGTTCTTCNAAGTGNTGAGNAATNANAGTTTGAAAAAATGGCATTGTGCTCAANATGCTCGGGATGGTGTGCAGTTNTCGGCATGCAAGCAANTGTTGGGGCTTTGGTAGCGAAGGNTCTTACTACCTCTGCAGTACCTTANTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTNTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTTAAAAAAATCTAGCTTTCACTGCGTAAAAAAAAAAA]
[-] EMBL AA753260 [TATTNAAAATAAAAGGGAGGAAACNCTTAAATTTAAGNAATGGGNGGAACNCGGGGTTAATNCANTTTNGGTCATGGAAANNCCCCTTTTGGAAGAGTAGAAAACAGCNAGGGACCTGTNANGTTCTTCNAAGTGNTGAGNAATNANAGTTTGAAAAAATGGCATTGTGCTCAANATGCTCGGGATGGTGTGCAGTTNTCGGCATGCAAGCAANTGTTGGGGCTTTGGTAGCGAAGGNTCTTACTACCTCTGCAGTACCTTANTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTNTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTTAAAAAAATCTAGCTTTCACTGCGTAAAAAAAAAAA]
consensusID : consensus_12287#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[GGCGCTCCTACTCCCAGCGCGGCCGTCGGGGCGGCGCCTTATCGCTCTTNCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGGGCGGCGTNCTGAGCGCTGTGGGCGCCTTACCGTGGCGGCGGCGGGGTCGTCGTCGTCGTCGTCGGGNNCTCTCTACNCGACGCCTNNCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTNTCAAAAACTGGGGAAACAGCGAGGTATTTCAANAATTTGGGANTCTTGGGGTCTGGTCCAGTTGGTGTCACAGTTGTTCGCTGGANTTTGTATTTCNCAGTA]
[+] EMBL AU166203 [GGCGCTCCTACTCCCAGCGCGGCCGTCGGGGCGGCGCCTTATCGCTCTTNCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGGGCGGCGTNCTGAGCGCTGTGGGCGCCTTACCGTGGCGGCGGCGGGGTCGTCGTCGTCGTCGTCGGGNNCTCTCTACNCGACGCCTNNCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTNTCAAAAACTGGGGAAACAGCGAGGTATTTCAANAATTTGGGANTCTTGGGGTCTGGTCCAGTTGGTGTCACAGTTGTTCGCTGGANTTTGTATTTCNCAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12287#0 TTCCTCGAGCACTGTTGGCCTACTGGAGTAGCCGCAGCGGAAGCGGACAGCAGCATCACA 60
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 ----------------------------TATTNAAAATAAAAGGGAGGAAACNCTTAAAT 32
consensus_12287#0 ATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCT 120
consensus_12287#2 -----------------GGCGCTCCTACTCCCAGCGCGGCCGTCGG-GGCGGCGCCTTAT 42
consensus_12287#1 TTAAGNAATGGGNGGAACNCGGGGTTAATNCANTTTNGGTCATGGAAANNCCCCTTTTGG 92
** ** * * ** * * * *
consensus_12287#0 ACGCTCTTGCGGCGGGGGGCGGCTTCTGCG--TCCTCCGCGCGCGCTCCCACTCCCCTCC 178
consensus_12287#2 -CGCTCTTNCGGCGGGGGGCGGCTTCTGCG--TCCTCCGCGCGCGCTCCCACTCCCCTCC 99
consensus_12287#1 AAGAGTAGAAAACAGCNAGGGACCTGTNANGTTCTTCNAAGTGNTGAGNAATNANAGTTT 152
* * * * * * * * ** ** * * * *
consensus_12287#0 CTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTT-ACCGTG---GCG 234
consensus_12287#2 CTGCGGGGCGCCTCAG-GGCGGCGTNCTGAGCGCTGTG-GGCGCCTT-ACCGTG---GCG 153
consensus_12287#1 GAAAAAATGGCATTGTGCTCAANATGCTCGGGATGGTGTGCAGTTNTCGGCATGCAAGCA 212
** * * * ** * *** * * * * ** **
consensus_12287#0 GCGGCGGGGTCGTCGTCGTCGTCG---GGCCCTCTCTACCCGACGCCTCCCCCCACCGAG 291
consensus_12287#2 GCGGCGGGGTCGTCGTCGTCGTCGTCGGGNNCTCTCTACNCGACGCCTNNCCC-ACCGAG 212
consensus_12287#1 ANTGTTGGGGCTTTGGTAGCGAAGGNTCTTACTACCTCTGCAGTACCTTANT--ATCAAG 270
* *** * * * ** * ** ** * *** * * **
consensus_12287#0 CA---------GGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAG---AGACTGGGG 339
consensus_12287#2 CA---------GGACATCGAGCGGGCCAAGTTCGAGCAGGTTNTCAAA---A-ACTGGGG 259
consensus_12287#1 CAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTNTAGATGTTTTCCTAGTTCAGGCTTCAG 330
** ** ** * * * * * ** * ** * * * ** *
consensus_12287#0 AAAACAGC-----GAGGTATTTCAAGAATTTGGGTA---CTCTTGGGTTC----TGGTCC 387
consensus_12287#2 AAA-CAGC-----GAGGTATTTCAANAATTTGGG-A---NTCTTGGGGTC----TGGTCC 305
consensus_12287#1 CGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCCTGGAGTTGCTGCGCTCC 390
* ** * * * ***** *** * * *** * * ***
consensus_12287#0 CAGTTGGTGTCCACAGTTGTTTCCGCTG-GAATTTTGTCATTTTCTACAGTTATTACTGG 446
consensus_12287#2 -AGTTGGTGTC-ACAGTTGTT--CGCTG-GANTTT-GTATTTCNCAGTA----------- 348
consensus_12287#1 GTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGG 450
* * * *** * **** * * * * *
consensus_12287#0 GAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTGCCGCGGGTTTTAT 506
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 CAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTA 510
consensus_12287#0 TTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAGACTTAGAAAAACAGCAAG 566
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 GGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTTAAAAAAATCT 570
consensus_12287#0 TGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGT 626
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 AGCTTTCACTGCGTAAAAAAAAAAA----------------------------------- 595
consensus_12287#0 GCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTT 686
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 ------------------------------------------------------------
consensus_12287#0 GGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCA 746
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 ------------------------------------------------------------
consensus_12287#0 AAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTC 806
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 ------------------------------------------------------------
consensus_12287#0 GCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGC 866
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 ------------------------------------------------------------
consensus_12287#0 AGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGAT 926
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 ------------------------------------------------------------
consensus_12287#0 CATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGT 986
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 ------------------------------------------------------------
consensus_12287#0 CCGCCTGTATGTTTCTTGTCCAGACAAAATTTAAAAAAATCTAGCTTTCATGCGTAAAAA 1046
consensus_12287#2 ------------------------------------------------------------
consensus_12287#1 ------------------------------------------------------------
consensus_12287#0 AAAAA 1051
consensus_12287#2 -----
consensus_12287#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||