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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 490 fasta sequence
[GAAGAGCCCNTGGTGGCTACTA-CGGAGGTGGTCGACGTGGTG-GATATGGCTATGATTA-CGGTTATGGCGGCAGGGGGGACTATTATGAAGATCA-GGGCGAATACTTTGAAGAACCA-GAGGACTACCCCCCTCCAGGCCGTGGACGTGG-CAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGG-CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGTTTTC-GACATGAATCCGTATG-CCCCATCAGTATGTTTTTACTT-CCCGTGG-CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA-AACAAACAAACA-CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCAAAAAAAAAAA]
[+] EMBL BQ906212 [GAAGAGCCCNTGGTGGCTACTACCGGAGGTGTTC ACGTGGTGAGATATGGCTATGATTACCGGTTAT GCGCCAGGGGGGACTATTATGAAGATCACGGGCGAATACTTTGAAGAACCACGAGGACTACCCCCCTCCAGGCCGTGGACGTGGCCAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGGCCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGTTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCCAAAGCAACAACATAACAAACNAACACCCCTGTGCT CTGTTTATTTATCAACAACCTAGGTTTCCTTCCCAAAAAAAAAA]
[+] EMBL AU092591 [ GCTACTA CGGAGGTGGTCGACGTGGTG GATATGGCTATGATTA CGGTTATGGCGGCAGGGGGGACTATTATGAAGATCA GGGCGAATACTTTGAAGAACCA GAGGACTACCCCCCTCCAGGCCGTGGACGTGG CAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGG CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA AACAAACAAACA CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT AAAAAA ]
[-] EMBL CB673885 [ CTACTA CGGAGGTGGTCGACGTGGTG GATATGGCTATGATTA CGGTTATGGCGGCAGGGGGGACTATTATGAAGATCA GGGCGAATACTTTGAAGAACCA GAGGACTACCCCCCTCCAGGCCGTGGACGTGG CAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGG CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA AACAAACAAACA CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCC ]
[+] EMBL AU092403 [ GGGGGACTATTATGAAGATCA GGGCGAATACTTTGAAGAACCA GAGGACTACCCCCCTCCAGGCCGTGGACGTGG CAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGG CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA AACAAACAAACA CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCAAAAAAAA ]
[+] EMBL BI798198 [ CCGGGACCATTCCGTGGTCGC G CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGTTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTTCCCCGTGGCCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGC AAAGCAAC AC AAC AACAAACA CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT AAAAAAA ]
[-] EMBL CB966396 [ CTGTAAGGGGTTTTCTGACCTGAATCCGTATGCCCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA AACAAACAAACA TCCTGTGCTGCTGTTTATTTATCAACAACCTAGGT ]
consensusID : consensus_12450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[CCCCTCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCTGCGTGTGCTCTGAATGCCATGAATTCTGTTTCGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU058320 [CCCCTCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCTGCGTGTGCTCTGAATGCCATGAATTCTGTTTCGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12450#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 375 fasta sequence
[CGGCGAGCACCATGGCCAGCGGGACCAGCCATGAACGGCGTCCGAGCGCCACCATTGCGTACGTGTGCCTTAGCCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAAAATAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT]
[-] EMBL CF322934 [CGGCGAGCACCATGGCCAGCGGGACCAGCCATGAACGGCGTCCGAGCGCCACCATTGCGTACGTGTGCCTTAGCCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAAAATAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT]
[-] EMBL CF324431 [ TGCGTACGTGTGCCTTAGCCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTNTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGT AGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT]
consensusID : consensus_12450#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence
[TTTGCACACACCAGGAAACAGCTGATGGACATGGATTGACGAATGTTGAATACTGACTCACTGATGAGGGAATTTGGGCCCTGCGAGGCCACAGAATGTGCTGGCACAGAGGCCATTGCTGTATGGGGTTTGTGCGACATGGAATGCCTGTGATGGCCCCATCAGTATGTTTTTACTGTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACTACTAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCCAAAAAAAAATAAATAATATATTTATTTTATATAAT]
[-] EMBL CB964501 [TTTGCACACACCAGGAAACAGCTGATGGACATGGATTGACGAATGTTGAATACTGACTCACTGATGAGGGAATTTGGGCCCTGCGAGGCCACAGAATGTGCTGGCACAGAGGCCATTGCTGTATGGGGTTTGTGCGACATGGAATGCCTGTGATGGCCCCATCAGTATGTTTTTACTGTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACTACTAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCCAAAAAAAAATAAATAATATATTTATTTTATATAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12450#1 ------------------------------------------------------------
consensus_12450#2 ------------------------------------------------------------
consensus_12450#0 GAAGAGCCCNTGGTGGCTACTACGGAGGTGGTCGACGTGGTGGATATGGCTATGATTACG 60
consensus_12450#3 ------------------------------------------------------------
consensus_12450#1 ------------------------------------------------------------
consensus_12450#2 ----------------------------------------------CGGCGAGCACCATG 14
consensus_12450#0 GTTATGGCGGCAGGGGGGACTATTATGAAGATCAGGGCGAATACTTTGAAGAACCAGAGG 120
consensus_12450#3 ------------------------------------------------------------
consensus_12450#1 ----CCCC--TCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCG-----GAGGACCGGG 49
consensus_12450#2 GCCAGCGG--GACCAGCCATGAACGGCGTCCGAGCGCCACCATTGCGTACGTGTGCCTTA 72
consensus_12450#0 ACTACCCCCCTCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCG-----GAGGACCGGG 175
consensus_12450#3 ---------------------------------------------------TTTGCACAC 9
*
consensus_12450#1 ACCATTCCGTGGTCG-CGGCCGTGGGCGTGGTCGATTCTAAG-ATGAAATCAGGAGGAGG 107
consensus_12450#2 GCCATTCCGTGGTCG-CGGCCGTGGGCGTGGTCGATTCTAAG-ATGAAATCAGGAGGAGG 130
consensus_12450#0 ACCATTCCGTGGTCG-CGGCCGTGGGCGTGGTCGATTCTAAG-ATGAAATCAGGAGGAGG 233
consensus_12450#3 ACCAGGAAACAGCTGATGGACATGGAT-TGACGAATGTTGAATACTGACTCACTGATGAG 68
*** * * ** * *** ** ** * * * * *** *
consensus_12450#1 TGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGG 167
consensus_12450#2 TGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGG 190
consensus_12450#0 TGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGG 293
consensus_12450#3 GGAATTTGGGCCCTGCGAGGCCACA-GAATGTGCTGGCACAGAGGCCATTGCTGTATGGG 127
* *** * ** ** * * * * * * * * * *********
consensus_12450#1 GGTTT--CGACATG-AATCCGTATG----CCCCATCAGTATGTTTTTACT-TCCCGTGGC 219
consensus_12450#2 GGTTT--CGACATG-AATCCGTATG----CCCCATCAGTATGTTTTTACT-TCCCGTGGC 242
consensus_12450#0 GTTTT--CGACATG-AATCCGTATG----CCCCATCAGTATGTTTTTACT-TCCCGTGGC 345
consensus_12450#3 GTTTGTGCGACATGGAATGCCTGTGATGGCCCCATCAGTATGTTTTTACTGTCCCGTGGC 187
* ** ******* *** * * ** ********************* *********
consensus_12450#1 GGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGC-TAGGCCTGTCC 278
consensus_12450#2 GGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAAAATAGGCCTGTCC 302
consensus_12450#0 GGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGC-TAGGCCTGTCC 404
consensus_12450#3 GGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGC-TAGGCCTGTCC 246
********************************************** ***********
consensus_12450#1 TGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAA 338
consensus_12450#2 TGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAA 362
consensus_12450#0 TGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAA 464
consensus_12450#3 TGTCAGCAAAAGCAACTACTAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAA 306
**************** ** ****************************************
consensus_12450#1 CCTAGGTTTCCTTCCTGCGTGTGCTCTGAATGCCATGAATTCTGTTTCGTCCAAAAAAAA 398
consensus_12450#2 CCTAGGTTTCCTT----------------------------------------------- 375
consensus_12450#0 CCTAGGTTTCCTTCCAAAAAAAAAAA---------------------------------- 490
consensus_12450#3 CCTAGGTTTCCTTCCCAAAAAAAAATAAATAATATATTTATTTTATATAAT--------- 357
*************
consensus_12450#1 AAAAAAAAAAAAAAAAAAAAAAA 421
consensus_12450#2 -----------------------
consensus_12450#0 -----------------------
consensus_12450#3 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||