cluster # 12522

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Oryza sativa
cluster # 12522 cluster # 12522 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12522#0 length = 2064 sequences # 8

consensus_12522#1 length = 514 sequences # 1
consensus_12522#2 length = 365 sequences # 1

consensusID : consensus_12522#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2064
fasta sequence

                              [TCTTTCTCCTCTAATCTCTCCTTCTCTTAACCCGCCTCCCCTCCCGTTCTCCCCGCAGATCGCAGTTTTTTCACCGTCCTCCGCCCGTGCAGTTGACGCTTCCGCCTCCCACACTGCGTCTGCGTGCGCACACAGCACCAATTCGAAACCCCTCCCCGCACTCCCTCCCCCTCCCTTCCTTGCCTTGCCTAGGC-GGCAACGCCTCCCGTCCTTTATAACCCTGCGGCTCCTCCCGCGTGAGGCACCGAGGCCCGGGTGGTAGACCGCGGGACCCGAGCCGAGCCGTGCCCTGCCCTGCCCTTCCTCCGCCCAGGGTCGCAGCCAGGTCGTCGTCGTCGTCGGAGGGGGAAGAGAGCCGCGGCGGCGTCAGGAGGAGGAGGAGGGGCGAGATGGAGGCGGAGAAGAAGCCGCCGGCGGTGTCCGACGTCGGGGCGTGGGCGATGAACGTCGTCAGCTCCGTCGGCATCATCATGGCAAACAAGCAGCTCATGTCCTCCTCCGGCTACGCCTTCTCCTTCGCCACGACGCTGACCGGATTCCACTTCACGGTCACGGCGCTCGTCGGATGGATCTCCAACGCCACCGGCTACTCCGTATCCAAGCACGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCGGGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGATCTCGAAATTGAGCATGATCCCGGTGGTTTGCTTGATGGAATGGGTGCTCAACAGCAAGCACTACACCACCAAGGTTATATCGGCCGTGGTCGTCGTGGCGGCGGGTGTTGGGATTTGCACGGTCACGGATGTGGAGGTCAATGCCAAGGGATTCATCTGCGCTTGCGTGGCTGTCTTCTGCACGTCGCTTCAACAGATTACAATTGGCTCCTTTCAGAAGAAGTACAACATAGGGTCATTTGAACTTCTCAGCAAAACTGCACCAATACAGGCTGTGTCTCTTATTATACTTGGTCCCTTTGCTGACTATTACCTCAATGGGCGATGGTTATTAAACTACAACTTCTCAACTGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTTGGCTGTCTTCTGCAACATGAGCCAGTACCTCTGCATCGGCCGGTTCTCTGCAACTTCGTTCCAGGTCCTGGGCCACATGAAGACCGTGTGCGTGCTGATTCTTGGCTGGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACAAGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTCGTCCGACCTCGAGGAAGGCGAGATGAAGAGCTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCATATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGCTATCGGCACTTGTGTTAATTTTGCCTCCTCCCTTGTTCCTGGGGTTCATAGATGATGATGATGCTGATGAACCCCAGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCA-TGTTCTTGATGGCGTGTTGTTATTATAGATGACAAGACTTATAATGGAATACAGGTGTTTATCCGTTGTAGGATGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL AK102987             [TCTTTCTCCTCTAATCTCTCCTTCTCTTAACCCGCCTCCCCTCCCGTTCTCCCCGCAGATCGCAGTTTTTTCACCGTCCTCCGCCCGTGCAGTTGACGCTTCCGCCTCCCACACTGCGTCTGCGTGCGCACACAGCACCAATTCGAAACCCCTCCCCGCACTCCCTCCCCCTCCCTTCCTTGCCTTGCCTAGGC GGCAACGCCTCCCGTCCTTTATAACCCTGCGGCTCCTCCCGCGTGAGGCACCGAGGCCCGGGTGGTAGACCGCGGGACCCGAGCCGAGCCGTGCCCTGCCCTGCCCTTCCTCCGCCCAGGGTCGCAGCCAGGTCGTCGTCGTCGTCGGAGGGGGAAGAGAGCCGCGGCGGCGTCAGGAGGAGGAGGAGGGGCGAGATGGAGGCGGAGAAGAAGCCGCCGGCGGTGTCCGACGTCGGGGCGTGGGCGATGAACGTCGTCAGCTCCGTCGGCATCATCATGGCAAACAAGCAGCTCATGTCCTCCTCCGGCTACGCCTTCTCCTTCGCCACGACGCTGACCGGATTCCACTTCACGGTCACGGCGCTCGTCGGATGGATCTCCAACGCCACCGGCTACTCCGTATCCAAGCACGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCGGGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGATCTCGAAATTGAGCATGATCCCGGTGGTTTGCTTGATGGAATGGGTGCTCAACAGCAAGCACTACACCACCAAGGTTATATCGGCCGTGGTCGTCGTGGCGGCGGGTGTTGGGATTTGCACGGTCACGGATGTGGAGGTCAATGCCAAGGGATTCATCTGCGCTTGCGTGGCTGTCTTCTGCACGTCGCTTCAACAGATTACAATTGGCTCCTTTCAGAAGAAGTACAACATAGGGTCATTTGAACTTCTCAGCAAAACTGCACCAATACAGGCTGTGTCTCTTATTATACTTGGTCCCTTTGCTGACTATTACCTCAATGGGCGATGGTTATTAAACTACAACTTCTCAACTGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTTGGCTGTCTTCTGCAACATGAGCCAGTACCTCTGCATCGGCCGGTTCTCTGCAACTTCGTTCCAGGTCCTGGGCCACATGAAGACCGTGTGCGTGCTGATTCTTGGCTGGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACAAGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTCGTCCGACCTCGAGGAAGACGAGATGAAGAGCTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCATATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGCTATCGGCACTTGTGTTAATTTTGCCTCCTCCCTTGTTCCTGGGGTTCATAGATGATGATGATGCTGATGAACCCCAGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCA TGTTCTTGATGGCGTGTTGTTATTATAGATGACAAGACTTATAATGGAATACAGGTGTT                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU173918             [                                                                                 CGCCCGTGCAGTTGACGCTTCCGCCTCCCACACTGCGTCTGCGTGCGCACACAGCACCAATTCGAAACCCCTCCCCGCACTCCCTCCCCCTCCCTTCCTTGCCTTGCCTAGGCNGGCAACGCCTCCCGTCCTTTATAACCCTGCGGCTCCTCCCGCGTGAGGCACCGAGGCCCGGGTGGTAGACCGCGGGACCCGAGCCGAGCCGTGCCCTGCCCTGCCCTTCCTCCGCCCAGGGTCGCAGCCAGGTCGTCGTCGTCGTCGGAGGGGGAAGAGAGCCGCGGCGGCGTCAGGAGGAGGAGGAGGGGCGAGATGGAGGCGGAGAAGAAGCCGCCGGCGGTGTCCGACGTCGGGGCGTGGGCGATGAACGTCGTCAGCTCCGTCGGCATCATCATGGCAAACAAGCAGCTCATGTCCTCCTCCGGCTACGCCTTCTCCTTCGCCACGACGCTGACCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CK085129             [                                                                                                                                                                                                     CAACGCCTCCCGTCCTTTATAACCCTGCGGCTCCTCCCGCGTGAGGCACCGAGGCCCGGGTGGTAGACCGCGGGACCCGAGCCGAGCCGTGCCCTGCCCTGCCCTTCCTCCGCCCAGGGTCGCAGCCAGGTCGTCGTCGTCGTCGGAGGGGGAAGAGAGCCGCGGCGGCGTCAGGAGGAGGAGGAGGGGCGAGATGGAGGCGGAGAAGAAGCCGCCGGCGGTGTCCGACGTCGGGGCGTGGGCGATGAACGTCGTCAGCTCCGTCGGCATCATCATGGCAAACAAGCAGCTCATGTCCTCCTCCGGCTACGCCTTCTCCTTCGCCACGACGCTGACCGGATTCCACTTCACGGTCACGGCGCTCGTCGGATGGATCTCCAACGCCACCGGCTACTCCGTATCCAAGCACGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCGGGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGATCTCGAAATTGAGCATGATCCCGGTGGTTTGCTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK064035             [                                                                                                                                                                                                                                                             CGGGTGGTAGACCGCGGGACCCGAGCCGAGCCGTGCCCTGCCCTGCCCTTCCTCCGCCCAGGGTCGCAGCCAGGTCGTCGTCGTCGTCGGAGGGGGAAGAGAGCCGCGGCGGCGTCAGGAGGAGGAGGAGGGGCGAGATGGAGGCGGAGAAGAAGCCGCCGGCGGTGTCCGACGTCGGGGCGTGGGCGATGAACGTCGTCAGCTCCGTCGGCATCATCATGGCAAACAAGCAGCTCATGTCCTCCTCCGGCTACGCCTTCTCCTTCGCCACGACGCTGACCGGATTCCACTTCACGGTCACGGCGCTCGTCGGATGGATCTCCAACGCCACCGGCTACTCCGTATCCAAGCACGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCGGGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGATCTCGAAATTGAGCATGATCCCGGTGGTTTGCTTGATGGAATGGGTGCTCAACAGCAAGCACTACACCACCAAGGTTATATCGGCCGTGGTCGTCGTGGCGGCGGGTGTTGGGATTTGCACGGTCACGGATGTGGAGGTCAATGCCAAGGGATTCATCTGCGCTTGCGTGGCTGTCTTCTGCACGTCGCTTCAACAGATTACAATTGGCTCCTTTCAGAAGAAGTACAACATAGGGTCATTTGAACTTCTCAGCAAAACTGCACCAATACAGGCTGTGTCTCTTATTATACTTGGTCCCTTTGCTGACTATTACCTCAATGGGCGATGGTTATTAAACTACAACTTCTCAACTGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTTGGCTGTCTTCTGCAACATGAGCCAGTACCTCTGCATCGGCCGGTTCTCTGCAACTTCGTTCCAGGTCCTGGGCCACATGAAGACCGTGTGCGTGCTGATTCTTGGCTGGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACAAGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTCGTCCGACCTCGAGGAAGGCGAGATGAAGAGCTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCATATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGCTATCGGCACTTGTGTTAATTTTGCCTCCTCCCTTGTTCCTGGGGTTCATAGATGATGATGATGCTGATGAACCCCAGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCA TGTTCTTGATGGCGTGTTGTTATTATAGATGACAAGACTTATAATGGAATACAGGTGTTTATCCGTTGTAGGAT                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB654700             [                                                                                                                                                                                                                                                                                CCCGAGCCGAGCCGTGCCCTGCCCTGCCCTTCCTCCGCCCAGGGTCGCAGCCAGGTCGTCGTCGTCGTCGGAGGGGGAAGAGAGCCGCGGCGGCGTCAGGAGGAGGAGGAGGGGCGAGATGGAGGCGGAGAAGAAGCCGCCGGCGGTGTCCGACGTCGGGGCGTGGGCGATGAACGTCGTCAGCTCCGTCGGCATCATCATGGCAAACAAGCAGCTCATGTCCTCCTCCGGCTACGCCTTCTCCTTCGCCACGACGCTGACCGGATTCCACTTCACGGTCACGGCGCTCGTCGGATGGATCTCCAACGCCACCGGCTACTCCGTATCCAAGCACGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCGGGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGATCTCGAAATTGAGCATGATCCCGGTGGTTTGCTTGATGGAATGGGTGCTCAACAGCAAGCACTACACCACCAAGGTTATATCGGCCGTGGTCGTCGTGGCGGCGGGTGTTGGGATTTGCACGGTCACGGATGTGGAGGTCAATGCCAAGGGATTCATCTGCGCTTGCGTGGCTGTCTTCTGCACGTCGCTTCAACAGATTACAATTGGCTCCTTTCAGAAGAAGTACAACATAGGGTCATTTGAACTTCTCAGCAAAACTGCACCAATACAGGCTGTGTCTCTTATTATACTTGGTCCCTTTGCTGACTATTACCTCAATGGGCGATGGTTATTAAACTACAACTTCTCAACTGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTTGGCTGTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSS2279A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCCTCCTCCGGATACGCCTTCTCCTTCGCCACGACGCTGACCGGATTCCACTTCACGGTCACGGCGCTCGTCGAATGGATCTNCAACGGCACCNANTACTACGTATCCAAGCACGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGNCAACACGTNCATCACCGGGATGAACCTTAGTNTNATGNTCAACTCCGTCGGTTTCTATCAGATCTCGAAATTGAGCATGATCCCGGTGGTTTNCTTGATGGAATGGGTGCTCAACAGCAAGCACTACACCACCAAGGTTATATCGGCCGTGGTCGTCGTGGCGGNGGGTGTTGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB654701             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTACAACTTATCAAGTGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTTGGCTGTGTTCTGCAACATGAGCCAGTACCTCTGCATCGGCCGGTTGTCTGCAACTTCGTTTCAGGTCCTGGGCCACATGAAGACCGTGTGCGTGCTGATTCTTGGGTGGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACAAGAGGGACATGGTGGTCGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTAGTCCGACCTCGAGGAAGGGGAGATGAAGAGTTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTAGGGGTTCAAATCCATATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGATATCGGCACTTGTGTTAATTTTGCTTCCTCCCTTGTTTCTGGGGTTCATAGATGATGATGATGTTGATGAACCCCAGCCGGTCTTGTCGTAGATGACCATTTTAGAAGCCATTGTTTTTGATGGCGTGTTGTTATTATA                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA758175             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACAAGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTCGTCCGACCTCGAGGAAGGCGAGATGAAGAGCTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCATATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGCTATCGGCACTTGTGTTAATTTTGCCTCCTCCCTTGTTCCTGAGGTTCATAGATGATGATGATGCTGATGAACCCCAGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCA TGTTCTTGATGGCGTGTTGTTATTATAGATGACAAGACTTATAATGGAATACAGGTG TTATCCGTTGTAGGATGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_12522#0
TCTTTCTCCTCTAATCTCTCCTTCTCTTAACCCGCCTCCCCTCCCGTTCTCCCCGCAGAT
CGCAGTTTTTTCACCGTCCTCCGCCCGTGCAGTTGACGCTTCCGCCTCCCACACTGCGTC
TGCGTGCGCACACAGCACCAATTCGAAACCCCTCCCCGCACTCCCTCCCCCTCCCTTCCT
TGCCTTGCCTAGGCGGCAACGCCTCCCGTCCTTTATAACCCTGCGGCTCCTCCCGCGTGA
GGCACCGAGGCCCGGGTGGTAGACCGCGGGACCCGAGCCGAGCCGTGCCCTGCCCTGCCC
TTCCTCCGCCCAGGGTCGCAGCCAGGTCGTCGTCGTCGTCGGAGGGGGAAGAGAGCCGCG
GCGGCGTCAGGAGGAGGAGGAGGGGCGAGATGGAGGCGGAGAAGAAGCCGCCGGCGGTGT
CCGACGTCGGGGCGTGGGCGATGAACGTCGTCAGCTCCGTCGGCATCATCATGGCAAACA
AGCAGCTCATGTCCTCCTCCGGCTACGCCTTCTCCTTCGCCACGACGCTGACCGGATTCC
ACTTCACGGTCACGGCGCTCGTCGGATGGATCTCCAACGCCACCGGCTACTCCGTATCCA
AGCACGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCG
GGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGATCTCGAAATTGAGCA
TGATCCCGGTGGTTTGCTTGATGGAATGGGTGCTCAACAGCAAGCACTACACCACCAAGG
TTATATCGGCCGTGGTCGTCGTGGCGGCGGGTGTTGGGATTTGCACGGTCACGGATGTGG
AGGTCAATGCCAAGGGATTCATCTGCGCTTGCGTGGCTGTCTTCTGCACGTCGCTTCAAC
AGATTACAATTGGCTCCTTTCAGAAGAAGTACAACATAGGGTCATTTGAACTTCTCAGCA
AAACTGCACCAATACAGGCTGTGTCTCTTATTATACTTGGTCCCTTTGCTGACTATTACC
TCAATGGGCGATGGTTATTAAACTACAACTTCTCAACTGGGGCAACTTTCTTCATATTGC
TTTCTTGCTCCTTGGCTGTCTTCTGCAACATGAGCCAGTACCTCTGCATCGGCCGGTTCT
CTGCAACTTCGTTCCAGGTCCTGGGCCACATGAAGACCGTGTGCGTGCTGATTCTTGGCT
GGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGA
TGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCC
CCCGGAACAAGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGA
GCGGCCTCCCCTCGTCCGACCTCGAGGAAGGCGAGATGAAGAGCTAGCTAATGACATATT
ATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCATATATTGCCCC
CATTCTGGGGGAAGTTCTTGAAGCTATCGGCACTTGTGTTAATTTTGCCTCCTCCCTTGT
TCCTGGGGTTCATAGATGATGATGATGCTGATGAACCCCAGCCGGTCTCGACGTAGATGA
CCATTTTAGAAGCCATGTTCTTGATGGCGTGTTGTTATTATAGATGACAAGACTTATAAT
GGAATACAGGTGTTTATCCGTTGTAGGATGATTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_12522#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [TNGGGNGGGTAAACCAAGGATTTTNGGGNGGGGGTTTTTTGAANNGGTTAAAGAAGAAAAAANAAGGTTATTGAATTTTNAGCAAAATGCACCAAANAGGNGGGTTTTTTANAAAANTGGTCCCTTTGCGGAANATAACNTCAATGGGCGATGGTTATTAAAANAACAAATTTTTCAANTGGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTTGGCTNTCTTCTGCAACATGAGCCAGTACTTCTGCATCGGCCGGTTNTCTGCAACTTTCGTTCCAGTTCCTGGGCCACATGAAGACCGTGTGCGTGCTGATTCTTGGCTGGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACAAGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCC]

[+] EMBL AA753579             [TNGGGNGGGTAAACCAAGGATTTTNGGGNGGGGGTTTTTTGAANNGGTTAAAGAAGAAAAAANAAGGTTATTGAATTTTNAGCAAAATGCACCAAANAGGNGGGTTTTTTANAAAANTGGTCCCTTTGCGGAANATAACNTCAATGGGCGATGGTTATTAAAANAACAAATTTTTCAANTGGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTTGGCTNTCTTCTGCAACATGAGCCAGTACTTCTGCATCGGCCGGTTNTCTGCAACTTTCGTTCCAGTTCCTGGGCCACATGAAGACCGTGTGCGTGCTGATTCTTGGCTGGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACAAGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCC]




>consensus_12522#1
TNGGGNGGGTAAACCAAGGATTTTNGGGNGGGGGTTTTTTGAANNGGTTAAAGAAGAAAA
AANAAGGTTATTGAATTTTNAGCAAAATGCACCAAANAGGNGGGTTTTTTANAAAANTGG
TCCCTTTGCGGAANATAACNTCAATGGGCGATGGTTATTAAAANAACAAATTTTTCAANT
GGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTTGGCTNTCTTCTGCAACATGAGCCA
GTACTTCTGCATCGGCCGGTTNTCTGCAACTTTCGTTCCAGTTCCTGGGCCACATGAAGA
CCGTGTGCGTGCTGATTCTTGGCTGGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACA
TCCTCGGGATGCTGCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCG
AGAAGAAGGCCTCCGCCCCAATCCCCCGGAACAAGAGCGACATGCTGGACGACTCCGAGG
ACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCC

consensusID : consensus_12522#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [GGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTCGTCCGACCTCGAGGAAGGCGAGATGAAGAGCTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCATATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGCTATCGGCACTTGTGTTAATTTTGCCTCCTCCCTTGTTCCTGGGGTTCATAGATGATGATGATGCTGATGAACCCCAGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCATGTTCTTGATGGCGTGTTGTTATTATAGATGACAAGACTTATAATGGAATNNAGGTGTTTATCCGTTNTTNAAAAAATNAAAAN]

[+] EMBL AU056698             [GGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTCGTCCGACCTCGAGGAAGGCGAGATGAAGAGCTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCATATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGCTATCGGCACTTGTGTTAATTTTGCCTCCTCCCTTGTTCCTGGGGTTCATAGATGATGATGATGCTGATGAACCCCAGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCATGTTCTTGATGGCGTGTTGTTATTATAGATGACAAGACTTATAATGGAATNNAGGTGTTTATCCGTTNTTNAAAAAATNAAAAN]




>consensus_12522#2
GGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTCGTCCGACCTCGAGGAAGGCGA
GATGAAGAGCTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGT
ACGTGTTCAAATCCATATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGCTATCGGCACT
TGTGTTAATTTTGCCTCCTCCCTTGTTCCTGGGGTTCATAGATGATGATGATGCTGATGA
ACCCCAGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCATGTTCTTGATGGCGTGTTG
TTATTATAGATGACAAGACTTATAATGGAATNNAGGTGTTTATCCGTTNTTNAAAAAATN
AAAAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12522#0      TCTTTCTCCTCTAATCTCTCCTTCTCTTAACCCGCCTCCCCTCCCGTTCTCCCCGCAGAT 60
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      CGCAGTTTTTTCACCGTCCTCCGCCCGTGCAGTTGACGCTTCCGCCTCCCACACTGCGTC 120
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      TGCGTGCGCACACAGCACCAATTCGAAACCCCTCCCCGCACTCCCTCCCCCTCCCTTCCT 180
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      TGCCTTGCCTAGGCGGCAACGCCTCCCGTCCTTTATAACCCTGCGGCTCCTCCCGCGTGA 240
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      GGCACCGAGGCCCGGGTGGTAGACCGCGGGACCCGAGCCGAGCCGTGCCCTGCCCTGCCC 300
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      TTCCTCCGCCCAGGGTCGCAGCCAGGTCGTCGTCGTCGTCGGAGGGGGAAGAGAGCCGCG 360
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      GCGGCGTCAGGAGGAGGAGGAGGGGCGAGATGGAGGCGGAGAAGAAGCCGCCGGCGGTGT 420
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      CCGACGTCGGGGCGTGGGCGATGAACGTCGTCAGCTCCGTCGGCATCATCATGGCAAACA 480
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      AGCAGCTCATGTCCTCCTCCGGCTACGCCTTCTCCTTCGCCACGACGCTGACCGGATTCC 540
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      ACTTCACGGTCACGGCGCTCGTCGGATGGATCTCCAACGCCACCGGCTACTCCGTATCCA 600
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      AGCACGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCG 660
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      GGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGATCTCGAAATTGAGCA 720
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      TGATCCCGGTGGTTTGCTTGATGGAATGGGTGCTCAACAGCAAGCACTACACCACCAAGG 780
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      TTATATCGGCCGTGGTCGTCGTGGCGGCGGGTGTTGGGATTTGCACGGTCACGGATGTGG 840
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      AGGTCAATGCCAAGGGATTCATCTGCGCTTGCGTGGCTGTCTTCTGCACGTCGCTTCAAC 900
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      AGATTACAATTGGCTCCTTTCAGAAGAAGTACAACATAGGGTCATTTGAACTTCTCAGCA 960
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      AAACTGCACCAATACAGGCTGTGTCTCTTATTATACTTGGTCCCTTTGCTGACTATTACC 1020
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      TCAATGGGCGATGGTTATTAAACTACAACTTCTCAACTGGGGCAACTTTCTTCATATTGC 1080
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      TTTCTTGCTCCTTGGCTGTCTTCTGCAACATGAGCCAGTACCTCTGCATCGGCCGGTTCT 1140
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      CTGCAACTTCGTTCCAGGTCCTGGGCCACATGAAGACCGTGTGCGTGCTGATTCTTGGCT 1200
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      GGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGA 1260
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      TGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCC 1320
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ----------------------TNGGGNGGGTAAACCAAGGATTTTNGGGNGGGGGTTTT 38
                                                                                   

consensus_12522#0      CCCGGAACAAGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGC--CAGGGT 1378
consensus_12522#2      ----------------------------------GGACGTTCCCCTCAAGGC--CAGGGT 24
consensus_12522#1      TTGAANNGGTTAAAGAAGAAAAAANAAGGTTATTGAATTTTNAGCAAAATGCACCAAANA 98
                                                         * *  **   *  ** **  **    

consensus_12522#0      GAGCGGCCTCCC------CTCGTCCGACCTCGAGGAAGGCGAGATGAA---GAGCTAGCT 1429
consensus_12522#2      GAGCGGCCTCCC------CTCGTCCGACCTCGAGGAAGGCGAGATGAA---GAGCTAGCT 75
consensus_12522#1      GGNGGGTTTTTTANAAAANTGGTCC--CTTTGCGGAANATAACNTCAATGGGCGATGGTT 156
                       *   **  *          * ****  * * * ****    *  * **   * * * * *

consensus_12522#0      AATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCA 1489
consensus_12522#2      AATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCA 135
consensus_12522#1      ATTAAAANAACAAATTTTTCAANTGGGGGCAACTTTCTTCATATTGCTTTCTTGCTCCTT 216
                       * * * * *  *  * **     *    *   *******  *  * * *  *     *  

consensus_12522#0      TA-TATTGCCCCCATTCTGGGGGAA-GTTCTTGAAGCTATCGGCACTTGTGTTAATTTTG 1547
consensus_12522#2      TA-TATTGCCCCCATTCTGGGGGAA-GTTCTTGAAGCTATCGGCACTTGTGTTAATTTTG 193
consensus_12522#1      GGCTNTCTTCTGCAACATGAGCCAGTACTTCTGCATCGGCCGGTTNTC-TGCAACTTTCG 275
                          * *   *  **   ** *  *    *  ** * *   ***   *  **  * *** *

consensus_12522#0      CCTCCTCCCTTGTTCC---TGGGGTTCATAGATGATGATGATGCT--GATGAACCCC--- 1599
consensus_12522#2      CCTCCTCCCTTGTTCC---TGGGGTTCATAGATGATGATGATGCT--GATGAACCCC--- 245
consensus_12522#1      TTCCAGTTCCTGGGCCACATGAAGACCGTGTGCG-TGCTGATTCTTGGCTGGATCCTGTT 334
                          *    * **  **   **  *  * *    * ** **** **  * ** * **    

consensus_12522#0      --AGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCATGTTCTTGATGGCGTGTTGTTA 1657
consensus_12522#2      --AGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCATGTTCTTGATGGCGTGTTGTTA 303
consensus_12522#1      CGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGCTGCTCGCCGTGATGGGC-ATGG 393
                         *  *** *   **   ** ** ***  * *      ** **    **  * *   *  

consensus_12522#0      TTATAGATGACAAGACTT---ATAATGGAATACAGGTGTTTATCCGTTGTAGGATGATTC 1714
consensus_12522#2      TTATAGATGACAAGACTT---ATAATGGAATNNAGGTGTTTATCCGTTNTTNAAAAAATN 360
consensus_12522#1      TGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACA 453
                       *  *  *   *  * *     * *  *  *   ***  *    **           *   

consensus_12522#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1774
consensus_12522#2      AAAAN------------------------------------------------------- 365
consensus_12522#1      AGAGCGACATGCTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCC 513
                                                                                   

consensus_12522#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1834
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      C----------------------------------------------------------- 514
                                                                                   

consensus_12522#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1894
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1954
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 2014
consensus_12522#2      ------------------------------------------------------------
consensus_12522#1      ------------------------------------------------------------
                                                                                   

consensus_12522#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 2064
consensus_12522#2      --------------------------------------------------
consensus_12522#1      --------------------------------------------------