These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1478 fasta sequence [TACAACTACTTTCTTTTTCATGATTTGTCTTACTCGTGGAGATCATTGGTCTTGGCCTGTTTGGATTAGGCTTGAGTAAATTCAGTAAACATGTTTGTTAGAATTAACATGTATAGATGTTAATCTTACTTCTCTTGTGTGCTTTGCAGATCTGTTGTATGTTCTATCTGACTTGCCAAGGCAACTTAACTTTATTGAGCATACCAGTGACATCGGATGGAAGGAGTATCAGAGGGCAAAGCCGGTGATAATTGACCCTGGGCTATACAGCCTGCAGAAATCTGATGTTTTCTGGATTACAGAGAAAAGAAGTGTTCCAACCGCATTCAAGCTCTTCACTGGCTCGGCGTGGATGATGCTTACTCATCAATTTATTGAATACTGCATATGGGGTTGGGACAATCTTCCCAGGACGGTCCTGATGTATTATGCCAATTTTCTTTCTTCACCAGAGGGTTACTTCCACACAGTCATTTGCAATGTCCCAGAGTTCCGCAACACCACTGTGAATCATGATCTACATTTCATTTCTTGGGACAACCCACCAAAGCAACACCCTCACTACCTCACCCTCAATGACTTTGACGGTATGGTTAACAGCAATGCTCCCTTTGCAAGAAAGTTTGGAAGAGAAGATCCTGTACTAGACAAGATCGACCAGGAATTATTGGGCCGCCAACCTGACGGGTTCGTGGCAGGTGGGTGGATGGATCTGTTGAACACGACAACAGTGAAAGGATCGTTCACTGTTGAGCGTGTACAAGATCTCCGCCCAGGGCCTGGTGCAGACAGGCTAAAGAAACTTGTCACAGGCTTGCTCACCCAGGAAGGCTTTGATGACAAGCATTGCTTGTGAAACTTGCAGTAATATGATTCTGGGGTAGGTTACACTATCAAAATTCGAGGATGTTGCGCCATTAGCTAGTCATCTACTAGCTGAAGAAGCAGCAGCACATAGCATCAATTCCACATGGATGGAATGGTCAGATAGGTGATCTTTTT--ACACAAACCACTTGAGTTGAATCACCGTACAGGAGACCAC-GGCCGTAGCACACGGAGATTATACAGCACTAATAGCTCATTAGGTTATGTTAGAGGATTATATCAGCCCCCAACCATTAATAATCTCTTCTTGATCTCTCTGCGCTGCGGGTTGTCCAAGATGGTCCATTATTCGTTCAGAAAATCACAGCACTGACCAGATCAATTTGCCAACCTGCAGCGCTTGAGATTTCGTTGTATTAACTTGGATTCTTCT-GGGCAAACTGGCACATTTTGATTACA-TACATGTATTCTTTGATTTCTTCTCCCTTTTCCCATTGCTGAGCATAGCGAATTACTTGCTCCCTTTTCTTGCCCCTAGGGTGGGTATGCATACTATATATATTTTGTTTTACTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB643073 [TACAACTACTTTCTTTTTCATGATTTGTCTTACTCGTGGAGATCATTGGTCTTGGCCTGTTTGGATTAGGCTTGAGTAAATTCAGTAAACATGTTTGTTAGAATTAACATGTATAGATGTTAATCTTACTTCTCTTGTGTGCTTTGCAGATCTGTTGTATGTTCTATCTGACTTGCCAAGGCAACTTAACTTTATTGAGCATACCAGTGACATCGGATGGAAGGAGTATCAGAGGGCAAAGCCGGTGATAATTGACCCTGGGCTATACAGCCTGCAGAAATCTGATGTTTTCTGGATTACAGAGAAAAGAAGTGTTCCAACCGCATTCAAGCTCTTCACTGGCTCGGCGTGGATGATGCTTACTCATCAATTTATTGAATACTGCATATGGGGTTGGGACAATCTTCCCAGGACGGTCCTGATGTATTATGCCAATTTTCTTTCTTCACCAGAGGGTTACTTCCACACAGTCATTTGCAATGTCCCAGAGTTCCGCAACACCACTGTGAATCATGATCTACATTTCATTTCTTGGGACAACCCACCAAAGCAACACCCTCACTACCTCACCCTCAATGACTTTGACGGTATGGTTAACAGCAATGCTCCCTTTGCAAGAAAGTTTGGAAGAGAAGATCCTGTACTAGACAAGATCGACCAGGAATTATTGGGCCGCCAACCTGACGGGTTCGTGGCAGGTGGGTGGATGGATCTGTTGAACACGACAACAGTGAAAGGATCGTTCACTGTTGAGCGTGTACAAGATCT ] [+] EMBL AK070134 [ ATCAGAGGGCAAAGCCGGTGATAATTGACCCTGGGCTATACAGCCTGCAGAAATCTGATGTTTTCTGGATTACAGAGAAAAGAAGTGTTCCAACCGCATTCAAGCTCTTCACTGGCTCGGCGTGGATGATGCTTACTCATCAATTTATTGAATACTGCATATGGGGTTGGGACAATCTTCCCAGGACGGTCCTGATGTATTATGCCAATTTTCTTTCTTCACCAGAGGGTTACTTCCACACAGTCATTTGCAATGTCCCAGAGTTCCGCAACACCACTGTGAATCATGATCTACATTTCATTTCTTGGGACAACCCACCAAAGCAACACCCTCACTACCTCACCCTCAATGACTTTGACGGTATGGTTAACAGCAATGCTCCCTTTGCAAGAAAGTTTGGAAGAGAAGATCCTGTACTAGACAAGATCGACCAGGAATTATTGGGCCGCCAACCTGACGGGTTCGTGGCAGGTGGGTGGATGGATCTGTTGAACACGACAACAGTGAAAGGATCGTTCACTGTTGAGCGTGTACAAGATCTCCGCCCAGGGCCTGGTGCAGACAGGCTAAAGAAACTTGTCACAGGCTTGCTCACCCAGGAAGGCTTTGATGACAAGCATTGCTTGTGAAACTTGCAGTAATATGATTCTGGGGTAGGTTACACTATCAAAATTCGAGGATGTTGCGCCATTAGCTAGTCATCTACTAGCTGAAGAAGCAGCAGCACATAGCATCAATTCCACATGGATGGAATGGTCAGATAGGTGATCTTTTT ACACAAACCACTTGAGTTGAATCACCGTACAGGAGACCAC GGCCGTAGCACACGGAGATTATACAGCACTAATAGCTCATTAGGTTATGTTAGAGGATTATATCAGCCCCCAACCATTAATAATCTCTTCTTGATCTCTCTGCGCTGCGGGTTGTCCAAGATGGTCCATTATTCGTTCAGAAAATCACAGCACTGACCAGATCAATTTGCCAACCTGCAGCGCTTGAGATTTCGTTGTATTAACTTGGATTCTTCT GGGCAAACTGGCACATTTTGATTACA TACATGTATTC ] [-] EMBL CB643074 [ AGCAATGCTCCCTTTGCAAGAAAGTTTGGAAGAGAAGATCCTGTACTAGACAAGATCGACCAGGAATTATTGGGCCGCCAACCTGACGGGTTCGTGGCAGGTGGGTGGATGGATCTGTTGAACACGACAACAGTGAAAGGATCGTTCACTGTTGAGCGTGTACAAGATCTCCGCCCAGGGCCTGGTGCAGACAGGCTAAAGAAACTTGTCACAGGCTTGCTCACCCAGGAAGGCTTTGATGACAAGCATTGCTTGTGAAACTTGCAGTAATATGATTCTGGGGTAGGTTACACTATCAAAATTCGAGGATGTTGCGCCATTAGCTAGTCATCTACTAGCTGAAGAAGCAGCAGCACATAGCATCAATTCCACATGGATGGAATGGTCAGATAGGTGATCTTTTT ACACAAACCACTTGAGTTGAATCACCGTACAGGAGACCAC GGCCGTAGCACACGGAGATTATACAGCACTAATAGCTCATTAGGTTATGTTAGAGGATTATATCAGCCCCCAACCATTAATAATCTCTTCTTGATCTCTCTGCGCTGCGGGTTGTCCAAGATGGTCCATTATTCGTTCAGAAAATCACAGCACTGACCAGATCAATTTGCCAACCTGCAGCGCTTGAGATTTCGTTGTATTAACTTGGATTCTTCT GGGCAAACTGGCACATTTTGATTACA TACATGTATTCTTTGATTTCTTCTCCCTTTTCCCATTGCTGAGCATAGCGAATTACTTGCTCCCTTTTCTTGCCCCTAGGGTGGGTATGCATACTATATATATTTTGTTTTACTTAAAAGA ] [-] EMBL CB673094 [ TGGGCCGCCACCCTGACGGGTTCGTGGCAGGTGGGTGGATGGATCTGTTGAACACGACACCAGTGAAAGGATCGTTCACTGTTGAGCGTGTACAAGATCTCCGCCCAGGGCCTGGTGCAGACAGGCTAAAGAAACTTGTCACAGGCTTGCTCACCCAGGAAGGCTTTGATGACAAGCATTGCTTGTGAAACTTGCAGTAATATGATTCTGGGGTAGGTTACACTATCAAAATTCGAGGATGTTGCGCCATTAGCTAGTCATCTACTAGCTGAAGAAGCAGCAGCACATAGCATCAATTCCACATGGATGGAATGGTCAGATAGGTGATCTTTTT ACACAAACCACTTGAGTTGAATCCCCGTACAGGAGACCAC GCCCGTAGCACACGGAGATTATACAGCACTAATAGCTCATTAGGTTATGTTAGAGGATTATATCAGCCCCCAACCATTAATAATCTCTTCTTGATCTCTCTGCGCTGCGGGTTGTCCAAGATGGTCCATTATTCGTTCAGAAAATCACAGCACTGACCAGATCAATTTGCCAACCTGCAGCGCTTGAGATTTCGTTGTATTAACTTGGATTCTTCT GGGCAACCTGGCACATTTTCCTTAAA GGGATGTATTCT ] [-] EMBL CB636028 [ AGACAGGCTAAAGAAACTTGTCACAGGCTTGCTCACCCAGGAAGGCTTTGATGACAAGCATTGCTTGTGAAACTTGCAGTAATATGATTCTGGGGTAGGTTACACTATCAAAATTCGAGGATGTTGCGCCATTAGCTAGTCATCTACTAGCTGAAGAAGCAGCAGCACATAGCATCAATTCCACATGGATGGAATGGTCAGATAGGTGATCTTTTT ACACAAACCACTTGAGTTGAATCACCGTACAGGAGACCAC GGCCGTAGCACACGGAGATTATACAGCACTAATAGCTCATTAGGTTATGTTAGAGGATTATATCAGCCCCCAACCATTAATAATCTCTTCTTGATCTCTCTGCGCTGCGGGTTGTCCAAGATGGTCCATTATTCGTTCAGAAAATCACAGCACTGACCAGATCAATTTGCCAACCTGCAGCGCTTGAGATTTCGTTGTATTAACTTGGATTTTTTTGGGGCAAACTGGCACATTTTGATTACA AACATGTATTTTT ] [+] EMBL AA751088 [ ACTATCAAAATTCGAGGATGTTNCGCCATTAGCTAGTCATCTACTAGCTGAAGAAGCAGCAGCACATAGCATCAATTCCACATGGATGGAATGGTCAGATAGGTGA CTTTTT ACACAAACCACTTGAGTTGAATCACCGTACAGGAGACCAC GGCCGTAGCACAC GAGATTATACAGCACTAATAGCTCA TAG TATG ] [+] EMBL BI807595 [ GATGTTGCGCCATTAGCTAGTCATCTACTAGCTGAAGAAGCAGCAGCACATAGCATC ATTCCACATGGATGGAATGGTCAGATAGGTGATCTTTTTACACACAAACCACTTGAGTTGAATCACCGTACAGGAGACCAC GGCCGTAGCACACGGAGATTATACAGCACTAATAGCTCATTAGGTTATGTTAGAGGATTATATCAGCCCCCAACCATTAATAATCTCTTCTTGATCTCTCTGCGCTGCGGGTTGTCCAAGATGGTCCATTATTCGTTCAGAAAATCACAGCACTGACCAGATCAATTTGCCAACCTGCAGCGCTTGAGATTTCGTTGTATTAACTTGGATTCTTCT GGGC AACTGGCACATTTTGATTACACTACATGTATTCTTTGATTTaaaaa ] [-] EMBL OSR27791A [ AAACCACTTGAGTTGAATCACCGTACAGGAGACCACGGGCCGTAGCACACGGAGATTATACAGCACTAATAGCTCATTAGGTTATGTTAGAGGATTATATCAGCCCCCAACCATTAATAATCTCTTCTTGATCTCTCTGCGCTGCGGGTTGTCCAAGATGGTCCATTATTCGTTCAGAAAATCACAGCACTGACCAGATCAATTTGCCAACCTGCAGCGCTTGAGATTTCGTTGTATTAACTTGGATTCTTCT GGGCAAACTGGCACATTTTGATTACA TACATGTATTCTTTGATTTC ] [+] EMBL BQ907581 [ ccgCTTGGATTCTTCT GGGCCAACTGGCACATTTTGATTACA TACATGTATTCTTTGATTTCTTCTCCCTTTTCCCAaaaaaaaaa ] [+] EMBL CF331118 [ TTTTCTTGCCCCTCTGGTGGGTATGCATACTATATATATTTTGTTTTATGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||