cluster # 12817

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Oryza sativa
cluster # 12817 cluster # 12817 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12817#0 length = 694 sequences # 10

consensus_12817#1 length = 420 sequences # 1

consensusID : consensus_12817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 694
fasta sequence

                              [ACTATAGGNCGAATTGGTTACCGGNCCCCCCCTTCGAGTCGACCCANG-GTCCGGCACCGGAGAAGAA-GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC-GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG-TCGGAGCTGACGGACGCGCTGCGGACGCT-GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT-GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG-AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT-CTTT-ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA]

[+] EMBL AU175222             [ACTATAGGNCGAATTGGTTACCGGNCCCCCCCTTCGAGTCGACCCANG GTCC GCACCGGAGAAGAA GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA]
[+] EMBL AU094207             [                                     tTCGACCCANGCGTCCGGCACCGGAGAAGAAGGTTCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATCGGATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA]
[+] EMBL AK121445             [                                                 atcgacCACCGGAGAAGAAGGATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AGGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTG                    ]
[+] EMBL AU065123             [                                                             AGAAG   GATCTATCTATAGCAGCNAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGANATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGANATCGCTGTTGGGAGCTGACGGACGCGCTGC GACGCTGGGGGTCGACATCCGCCGACGAGGTCCAGCGCTTNAN GGCCGAAATCGAna                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU064068             [                                                             AGAAG   GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGNATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTTCCTTTAATCTCTCATCGNTTTCCATCCATCATATCATCTTTCCNAATTTATTTAaanc                                                                                                                                                                                                 ]
[+] EMBL AU064182             [                                                             AGAAG   GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATGAAAGGACGTCGCCAAGGTCTTCTGATTCTNTTTT CTNT A                                                                                                                                                                                                                                                    ]
[+] EMBL AU165712             [                                                               AAGAAGGATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA]
[+] EMBL C72632               [                                                                 aag GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCn                                                                                                                                                                                                ]
[+] EMBL C73186               [                                                                          ATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGNATGGCTGCTGCTTCATCTGCTGACATGGAGAGGNTCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGNCGACGAGGTCCAGCGCATGATGGGCCGAGATCGACACCGACGGCGACGGTTTCATCGACTTCAACG                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU197298             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAA         ]




>consensus_12817#0
ACTATAGGNCGAATTGGTTACCGGNCCCCCCCTTCGAGTCGACCCANGGTCCGGCACCGG
AGAAGAAGATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGA
TTAATCGATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATC
GATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACAC
CAACGGGGACGGCAAGATATCGCTGTCGGAGCTGACGGACGCGCTGCGGACGCTGGGGTC
GACATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACACCGACGGCGACGGCTT
CATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATGAAGGACGT
CGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCAT
CTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTA
CCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCC
ATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAA
TTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA

consensusID : consensus_12817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [ACGGACGCGCTGCGGACGCTGGGGTCGANATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACNCCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCANCCCTGGCCTCATGAAGGACGTCGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU085867             [ACGGACGCGCTGCGGACGCTGGGGTCGANATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACNCCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCANCCCTGGCCTCATGAAGGACGTCGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12817#1
ACGGACGCGCTGCGGACGCTGGGGTCGANATCCGCCGACGAGGTCCAGCGCATGATGGCC
GAGATCGACNCCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAAC
GCCANCCCTGGCCTCATGAAGGACGTCGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTC
TCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTAT
ATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCT
ATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCT
CGCGCATATATGCCTTAATTAATTAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12817#0      ACTATAGGNCGAATTGGTTACCGGNCCCCCCCTTCGAGTCGACCCANGGTCCGGCACCGG 60
consensus_12817#1      ------------------------------------------------------------
                                                                                   

consensus_12817#0      AGAAGAAGATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGA 120
consensus_12817#1      ------------------------------------------------------------
                                                                                   

consensus_12817#0      TTAATCGATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATC 180
consensus_12817#1      ------------------------------------------------------------
                                                                                   

consensus_12817#0      GATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACAC 240
consensus_12817#1      ------------------------------------------------------------
                                                                                   

consensus_12817#0      CAACGGGGACGGCAAGATATCGCTGTCGGAGCTGACGGACGCGCTGCGGACGCTGGGGTC 300
consensus_12817#1      ----------------------------------ACGGACGCGCTGCGGACGCTGGGGTC 26
                                                         **************************

consensus_12817#0      GACATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACACCGACGGCGACGGCTT 360
consensus_12817#1      GANATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACNCCGACGGCGACGGCTT 86
                       ** **************************************** ****************

consensus_12817#0      CATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATGAAGGACGT 420
consensus_12817#1      CATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCANCCCTGGCCTCATGAAGGACGT 146
                       ************************************** *********************

consensus_12817#0      CGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCAT 480
consensus_12817#1      CGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCAT 206
                       ************************************************************

consensus_12817#0      CTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTA 540
consensus_12817#1      CTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTA 266
                       ************************************************************

consensus_12817#0      CCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCC 600
consensus_12817#1      CCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCC 326
                       ************************************************************

consensus_12817#0      ATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAA 660
consensus_12817#1      ATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAA 386
                       ************************************************************

consensus_12817#0      TTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA 694
consensus_12817#1      TTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA 420
                       ********            **************