These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [GGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCCGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACAACGTGATGCAAATCTGATTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAATTCTGCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACACTTAGATGTGGTATGACACAATGTTGTCTGTGGAAAGTGGAGATCCTTCACACCTGTAAATTCACTGAGGCTGTTGTGTCAAGTAGTAAATGGCAAAATTCAGAGTTTGGTTCTTACACGGGATCATGTGCTGTCACACTTTCTGATAATCCTGTGCCTCCAGCTGATGTTTGCTCAACTGAAATGCGCACAGAAAAGAAAGGNTAAATAACAAAAAAC] [+] EMBL CB097007 [GGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCCGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACAACGTGATGCAAATCTGATTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAATTCTGCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACACTTAGATGTGGTATGACACAATGTTGTCTGTGGAAAGTGGAGATCCTTCACACCTGTAAATTCACTGAGGCTGTTGTGTCAAGTAGTAAATGGCAAAATTCAGAGTTTGGTTCTTACACGGGATCATGTGCTGTCACACTTTCTGATAATCCTGTGCCTCCAGCTGATGTTTGCTCAACTGAAATGCGCACAGAAAAGAAAGGNTAAATAACAAAAAAC] consensusID : consensus_1293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [GCCATGGACGCGGAGATGGACCTCCTCGCCGACGACGACGGCGGCGAGGCCGAGAGGCTGGAGGCCGCGGAGGCGCAGGCCGACCTCCTCCGCGATCGCCTCCGCCTCGCCGTCATCAGCATCGCCACCTCCGAAGGAAAGAAGGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCTGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACCACGTGATGCACATCTGATTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAACTCTGCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACATTTAGATGTGGTATGACACCATGTTGTCTGTGGAAAAAACACANCCGCCAAACCCCCAGACCTCGAGGGGGGGC] [+] EMBL CA754175 [GCCATGGACGCGGAGATGGACCTCCTCGCCGACGACGACGGCGGCGAGGCCGAGAGGCTGGAGGCCGCGGAGGCGCAGGCCGACCTCCTCCGCGATCGCCTCCGCCTCGCCGTCATCAGCATCGCCACCTCCGAAGGAAAGAAGGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCTGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACCACGTGATGCACATCTGATTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAACTCTGCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACATTTAGATGTGGTATGACACCATGTTGTCTGTGGAAAAAACACANCCGCCAAACCCCCAGACCTCGAGGGGGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1293#0 ------------------------------------------------------------ consensus_1293#1 GCCATGGACGCGGAGATGGACCTCCTCGCCGACGACGACGGCGGCGAGGCCGAGAGGCTG 60 consensus_1293#0 ------------------------------------------------------------ consensus_1293#1 GAGGCCGCGGAGGCGCAGGCCGACCTCCTCCGCGATCGCCTCCGCCTCGCCGTCATCAGC 120 consensus_1293#0 -----------------------GGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGC 37 consensus_1293#1 ATCGCCACCTCCGAAGGAAAGAAGGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGC 180 ************************************* consensus_1293#0 ATCGCCGATCCGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCA 97 consensus_1293#1 ATCGCCGATCTGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCA 240 ********** ************************************************* consensus_1293#0 CAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAAT 157 consensus_1293#1 CAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAAT 300 ************************************************************ consensus_1293#0 GAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCC 217 consensus_1293#1 GAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCC 360 ************************************************************ consensus_1293#0 AGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACAACGTGATGCAAATCTGATTT 277 consensus_1293#1 AGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACCACGTGATGCACATCTGATTT 420 *************************************** ********** ********* consensus_1293#0 AAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAATTCT 337 consensus_1293#1 AAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAACTCT 480 ******************************************************** *** consensus_1293#0 GCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACACTTAGATGTGGTATGACAC 397 consensus_1293#1 GCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACATTTAGATGTGGTATGACAC 540 ***************************************** ****************** consensus_1293#0 AATGTTGTCTGTGGAAAGTGGAGATCCTTCACACCTGTAAATTCACTGAGGCTGTTGTGT 457 consensus_1293#1 CATGTTGTCTGTGGAAAAAACACANCCGCCAAACCCCCAGACCTCGAGGGGGGGC----- 595 **************** * * ** ** *** * * * ** * consensus_1293#0 CAAGTAGTAAATGGCAAAATTCAGAGTTTGGTTCTTACACGGGATCATGTGCTGTCACAC 517 consensus_1293#1 ------------------------------------------------------------ consensus_1293#0 TTTCTGATAATCCTGTGCCTCCAGCTGATGTTTGCTCAACTGAAATGCGCACAGAAAAGA 577 consensus_1293#1 ------------------------------------------------------------ consensus_1293#0 AAGGNTAAATAACAAAAAAC 597 consensus_1293#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||