cluster # 13022

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Oryza sativa
cluster # 13022 cluster # 13022 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13022#0 length = 1547 sequences # 8
consensus_13022#1 length = 785 sequences # 2

consensus_13022#2 length = 295 sequences # 1
consensus_13022#3 length = 247 sequences # 1

consensusID : consensus_13022#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1547
fasta sequence

                              [CGGCGGTGGATGATGCTACCGGAGGGCCACGGCCTCTACCCCGGCCATCCCGACCTCCGCGGCTACGTCCGCTTCTTCAACCTCTCCACCGCCGCCTTGGTCCGTGTCCATCTACCGCTCCTACGCGACCACGTCATCATCGACTCGGTCGACGGCCTCCTGCTCCTGCACCGCGACCACGACACAGCCATCCGCCTCCTCCACCCCTTCACCGGCGATGTCGCCGACCTCCCGCCGCTGGCTTCCCTCCTGCCACAGATGGAATCCGAGAGCCGCGACCGCAGCCAGCGAAGCAAGCACAGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTCATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGGACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTCTATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCACCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAATGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTGCTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATACTAGAAGGATATGCGCGGCGCCACGCCGCGCACGACAATGTTTTGCATGAGCTTAGTGAAGGCTACGTAGCATAATTAAATGTGAACCAAAGATCACATTCTTTCCAA]

[+] EMBL AK101587             [CGGCGGTGGATGATGCTACCGGAGGGCCACGGCCTCTACCCCGGCCATCCCGACCTCCGCGGCTACGTCCGCTTCTTCAACCTCTCCACCGCCGCCTTGGTCCGTGTCCATCTACCGCTCCTACGCGACCACGTCATCATCGACTCGGTCGACGGCCTCCTGCTCCTGCACCGCGACCACGACACAGCCATCCGCCTCCTCCACCCCTTCACCGGCGATGTCGCCGACCTCCCGCCGCTGGCTTCCCTCCTGCCACAGATGGAATCCGAGAGCCGCGACCGCAGCCAGCGAAGCAAGCACAGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTCATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGGACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTCTATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCACCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAATGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTGCTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATACTAGAAGGATATGCGCGGCGCCACGCCGCGCACGACAATGTTTTGCATGAGCTTAGTGAAGGCTACGTAGCATAATTAAATGTGAACCAAAGATCACATTCTTTCCAA]
[+] EMBL AK106162             [CGGCGGTGGATGATGCTACCGGAGGGCCACGGCCTCTACCCCGGCCATCCCGACCTCCGCGGCTACGTCCGCTTCTTCAACCTCTCCACCGCCGCCTTGGTCCGTGTCCATCTACCGCTCCTACGCGACCACGTCATCATCGACTCGGTCGACGGCCTCCTGCTCCTGCACCGCGACCACGACACAGCCATCCGCCTCCTCCACCCCTTCACCGGCGATGTCGCCGACCTCCCGCCGCTGGCTTCCCTCCTGCCACAGATGGAATCCGAGAGCCGCGACCGCAGCCAGCGAAGCAAGCACAGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTCATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGGACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTCTATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCACCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAATGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTGCTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACA                                                                                                                         ]
[+] EMBL AK072644             [CGGCGGTGGATGATGCTACCGGAGGGCCACGGCCTCTACCCCGGCCATCCCGACCTCCGCGGCTACGTCCGCTTCTTCAACCTCTCCACCGCCGCCTTGGTCCGTGTCCATCTACCGCTCCTACGCGACCACGTCATCATCGACTCGGTCGACGGCCTCCTGCTCCTGCACCGCGACCACGACACAGCCATCCGCCTCCTCCACCCCTTCACCGGCGATGTCGCCGACCTCCCGCCGCTGGCTTCCCTCCTGCCACAGATGGAATCCGAGAGCCGCGACCGCAGCCAGCGAAGCAAGCACAGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTCATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGGACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTCTATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCACCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAATGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTGCTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF323948             [                                                                                                        TGTCCATCTACCGCTCCTACGCGACCACGTCATCATCGACTCAGTCGACGGCCTCCTGCTCCTGCACCGCGACCACGACACAGCCATCCGCCTCCTCCACCCCTTCACCGGCGATGTCGCCGACCTCCCGCCGCTGGCTTCCCTCCTGCCACAGATGGAATCCGAGAGCCGCGACCGCAGCCAGCGAAGCAAGCACAGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTCATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGGACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTCTATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCACCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAATGCCCAATGGACAAATTTCTATACCTGCTCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB655912             [                                                                                                                                                                                                                                CGACCTCCCGCCGCTGGCTTCCCTCCTGCCACAGATGGAATCCGAGAGCCGCGACCGCAGCCAGCGAAGCAAGCACAGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTCATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGGACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTCTATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCACCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAATGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTGCTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGNGCTCCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGNCATCGCAGATATTGGAATAAGGGAtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF307157             [                                                                                                                                                                                                                                                                                   CGACCGCAGCCAGCGAAGCAAGCACAGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTCATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGGACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTCTATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCACCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAATGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTGCTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK061644             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TATACATCTACCAGTTTAATCCACCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAATGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTGCTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTA                                                                                                                             ]
[-] EMBL CB655913             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TAACAAGGAGGGGAGTAAGATCCTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATACTAGAAGGATATGCGCGGCGCCACGCCGCGCACGACAATGTTTTGCATGAGCTTAGTGAAGGCT                                            ]




>consensus_13022#0
CGGCGGTGGATGATGCTACCGGAGGGCCACGGCCTCTACCCCGGCCATCCCGACCTCCGC
GGCTACGTCCGCTTCTTCAACCTCTCCACCGCCGCCTTGGTCCGTGTCCATCTACCGCTC
CTACGCGACCACGTCATCATCGACTCGGTCGACGGCCTCCTGCTCCTGCACCGCGACCAC
GACACAGCCATCCGCCTCCTCCACCCCTTCACCGGCGATGTCGCCGACCTCCCGCCGCTG
GCTTCCCTCCTGCCACAGATGGAATCCGAGAGCCGCGACCGCAGCCAGCGAAGCAAGCAC
AGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTC
ATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGG
ACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTC
TATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCA
CCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAA
TGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTG
CTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTT
GTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAA
CGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGAT
TTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATA
TTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGAC
ATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGC
AATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTG
GTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCC
TCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGC
AGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCG
ATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATG
CCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGC
TGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATAC
TAGAAGGATATGCGCGGCGCCACGCCGCGCACGACAATGTTTTGCATGAGCTTAGTGAAG
GCTACGTAGCATAATTAAATGTGAACCAAAGATCACATTCTTTCCAA

consensusID : consensus_13022#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 785
fasta sequence

                              [CTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATTGATACGGGAAGGATATGCGCGGCGCCACGCCGCGCACGCCTAAAAGGAAAAAAAAAAA]

[-] EMBL CB665937             [CTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATTGATACGGGAAGGATATGCGCGGCGCCACGCCGCGCACGCCTAAAAGGA          ]
[+] EMBL AF358771             [                                                                                                                                                                                                                                          CCAGCTAGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGAAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATACTAGAAGGATATGCGCGGCGCCACGCCGCGCACGACAAAAAAAAAAAAAAAAAA]




>consensus_13022#1
CTTGCTGACCTTGTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTG
TTCCTTGATGAACGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATC
CTTCCCTCCGATTTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGT
TCACTAGATATATTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCT
AGTGACGGAGACATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATC
TTTACTTGCTGCAATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAG
CCTATTTGGTTGGTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCT
GAGGTCTTTTCCTCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGG
GCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGC
CGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTAT
GGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGC
CTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATC
TATTATTGATACGGGAAGGATATGCGCGGCGCCACGCCGCGCACGCCTAAAAGGAAAAAA
AAAAA

consensusID : consensus_13022#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [AGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATAAAAAAAAAAA]

[+] EMBL CA999885             [AGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATAAAAAAAAAAA]




>consensus_13022#2
AGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGCAGCGGCTGCGGCTG
CAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCGATGTGTTCTCTATT
GAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATGCCTTCTTCCCTGGA
TTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCT
TTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATAAAAAAAAAAA

consensusID : consensus_13022#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [CCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATACTAGAAGGATATGCGCGGCGCCACGCCGNANNGNACAATGTTTTGCATGAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU057977             [CCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATACTAGAAGGATATGCGCGGCGCCACGCCGNANNGNACAATGTTTTGCATGAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13022#3
CCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGCTGTTTGAC
GGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATACTAGAAGGA
TATGCGCGGCGCCACGCCGNANNGNACAATGTTTTGCATGAGCTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13022#0      CGGCGGTGGATGATGCTACCGGAGGGCCACGGCCTCTACCCCGGCCATCCCGACCTCCGC 60
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      GGCTACGTCCGCTTCTTCAACCTCTCCACCGCCGCCTTGGTCCGTGTCCATCTACCGCTC 120
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      CTACGCGACCACGTCATCATCGACTCGGTCGACGGCCTCCTGCTCCTGCACCGCGACCAC 180
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      GACACAGCCATCCGCCTCCTCCACCCCTTCACCGGCGATGTCGCCGACCTCCCGCCGCTG 240
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      GCTTCCCTCCTGCCACAGATGGAATCCGAGAGCCGCGACCGCAGCCAGCGAAGCAAGCAC 300
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      AGCAGACTAATGAAAGTTTGCGCATCTGTTACCGTCACCTCCACTGGCACCATCACCGTC 360
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      ATGCTGGCCCTTGAAATCCTGCACCGCGTAGCCTACGCCACTCCCGGTGACCAACGGTGG 420
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      ACTCTCTCTGCCTGGACGCTCAAACCTTTTGTCAAACCCGTATCTTTCCAAGGCAAACTC 480
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      TATGCTTTGCAGCTCTCATCTTACGACATACATAAGGTATACATCTACCAGTTTAATCCA 540
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      CCATGCCAAGATAACGACAAGGGATTGCTTCATCTGCCATTGCCAGTGAAGATTGCTGAA 600
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      TGCCCAATGGACAAATTTCTATACCTGCTCAACTTTGCTGAATGTGGTTCAGAGCTCTTG 660
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      CTGGTTGCCTATAATGGTGTTTCTCGTTCAAAGCTGCTAGTATACAGACTTGCTGACCTT 720
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------CTTGCTGACCTT 12
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      GTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAA 780
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      GTCAGTGGAAGGATTGAGCCAGTAACGACCATTGGAGACCACGCCTTGTTCCTTGATGAA 72
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      CGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGAT 840
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      CGTTGTCTCTGTGTCTCACTCTCAAATAACAAGGAGGGGAGTAAGATCCTTCCCTCCGAT 132
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      TTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATA 900
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      TTGTCTAACTCTATCATTTGCATGCATAGTTTGCAGGTCGATCCTAGTTCACTAGATATA 192
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      TTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGAC 960
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      TTTCGTTTTGAGCAATATGACCTAGGTACTGGTACCTGGGCTCCAGCTAGTGACGGAGAC 252
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      ATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGC 1020
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ATTTTCCATAAACCACCACCGAGTCCCCATACACTTATCCATCATATCTTTACTTGCTGC 312
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      AATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTG 1080
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      AATCGCAGATATTGGAATAAAGGAATCATGTATTGCAGTAAAAGACAGCCTATTTGGTTG 372
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      GTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCC 1140
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      GTGAAGCAAGAACTGCGGTTTGGGGCTTGATGGGCTCTTGTTTCCGCTGAGGTCTTTTCC 432
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      TCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGC 1200
consensus_13022#2      --------------AGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGC 46
consensus_13022#1      TCCAGAATATCTAGAGGAGCAAATAAACTATGGGTGTGTTCGGAGGGGGCATTTTACAGC 492
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      AGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCG 1260
consensus_13022#2      AGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCG 106
consensus_13022#1      AGCGGCTGCGGCTGCAGCAGTTCAAAACTGCTGCGGCAGCGATGCCGCCGAACAGAGTCG 552
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      ATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATG 1320
consensus_13022#2      ATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATG 166
consensus_13022#1      ATGTGTTCTCTATTGAAAGTCCCTGGATCAATCGTCCAATTAGTGTATGGACCTTTGATG 612
consensus_13022#3      ------------------------------------------------------------
                                                                                   

consensus_13022#0      CCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGC 1380
consensus_13022#2      CCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGC 226
consensus_13022#1      CCTTCTTCCCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGC 672
consensus_13022#3      --------CCTGGATTAATCGTCCAATTAGTGCATGGACCTTTGATGCCTTCTTCTTGGC 52
                               ****************************************************

consensus_13022#0      TGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATAC 1440
consensus_13022#2      TGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATAA 286
consensus_13022#1      TGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATTGATAC 732
consensus_13022#3      TGTTTGACGGACCTTTGTTGCCCCATCTTTAACAGTATGCTACACATCTATTATAGATAC 112
                       ****************************************************** **** 

consensus_13022#0      TAGAAGGATATGCGCGGCGCCACGCCGCGCACGACAATGTTTTGCATGAGCTTAGTGAAG 1500
consensus_13022#2      AAAAAAAAA--------------------------------------------------- 295
consensus_13022#1      GGGAAGGATATGCGCGGCGCCACGCCGCGCACGCCTAAAAGGAAAAAAAAAAA------- 785
consensus_13022#3      TAGAAGGATATGCGCGGCGCCACGCCGNANNGNACAATGTTTTGCATGAGCTTAAAAAAA 172
                          **  *                                                    

consensus_13022#0      GCTACGTAGCATAATTAAATGTGAACCAAAGATCACATTCTTTCCAA------------- 1547
consensus_13022#2      ------------------------------------------------------------
consensus_13022#1      ------------------------------------------------------------
consensus_13022#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 232
                                                                                   

consensus_13022#0      ---------------
consensus_13022#2      ---------------
consensus_13022#1      ---------------
consensus_13022#3      AAAAAAAAAAAAAAA 247