cluster # 13517

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Oryza sativa
cluster # 13517 cluster # 13517 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13517#0 length = 1052 sequences # 10

consensus_13517#1 length = 785 sequences # 2
consensus_13517#2 length = 769 sequences # 1

consensusID : consensus_13517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1052
fasta sequence

                              [AAACA-CCCAAATCCTCATCTCCTCTCTTAGCTAAGATTGTTTGACAAAATAATCTCTAGCTTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCACACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGCGAGATATGGGTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGGCGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG-AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC-GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTAAGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGGTGGGATATTTATAGAAGGAATGATCAAATTTGGGTGCTTAAATCTGTCTGCAGGTCTCTCAAATGTAAATATGTAATTGTTCTTTCGCAAAAAAAAAAG]

[+] EMBL CB646421             [AAACAGCCCAAATCCTCATCTCCTCTCTTAGCTAAGATTGGTTGACGAAATAATCTCTAGCTTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCACACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGTGAGATATGGGTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGGCGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAAATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCAGCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG AAGAAGATCTAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGAGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAGTG                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB646349             [AAACA CCCAAATCCTCATCTCCTCTCTTAGCTAAGATTGTTTGACAAAATAATCTCTAGCTTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCACACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGCGAGATATGGGTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGGCGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGT                                                                                                                                                                                                                                  ]
[+] EMBL AK107075             [                  TCTCCTCTCTTAGCTAAGATTGTTTGACAAAATAATCTCTAGCTTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCACACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGCGAGATATGGGTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGGCGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTAAGTATTGCACCCA                                                                                                                                           ]
[+] EMBL CB661572             [                                               AAATAATCTCTAGCTTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCACACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGCGAGATATGGGTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGGCGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTT                                                                                                                                                                                                                                                                         ]
[+] EMBL CA754194             [                                                AATAATCTCTAGCTTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCACACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGCGAGATATGGGTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGGCGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGGCCACTTCCGGGACCTCGTGCAGCGCCTCACCGGCNAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAANAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAAGAAGATC AGTGCGAGGTGGAGGTGGAGGAAGGGCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCCGGGGAGGGGTCTGGAGC TCTGGNAGGAGGAGGACGTGGTC                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB662709             [                                                        CTAGCTTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCACACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGCGAGATATGGGTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGGCGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGAT AACACAATGGTGATGATGGTTAAGTAAGTATTGCACCCATG                                                                                                                                         ]
[+] EMBL CB632835             [                                                                 ACATCACATCATATCACTTCCCTCTCTCAATCTTTTCCTCTCCTATCCTCTCCTCACACTAGCTTAGCTTAGCTTAGCTAGTTACCATCGTCTTCTTCGTCTTCGGCGAGATATGGATGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGGCGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGA   AGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAG   GAAGAAGAAG AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCTCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAANAGAAAAAGAGAGAGAGAGA                                                                                                                                                                                                      ]
[-] EMBL CB646026             [                                                                                                                                                                                                                                             GCGGCGCGGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTAAGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGGTGGGATATTTATAGAAGGAATGATCAAATTTGGGTGCTTAAATCTGTCTGCAGGTCTCTCAAATGTAAATATGTAATTG                    ]
[-] EMBL CB661573             [                                                                                                                                                                                                                                                                                GGCGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTAAGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGGTGGGATATTTATAGAAGGAATGATCAAATT                                                                     ]
[-] EMBL CB645947             [                                                                                                                                                                                                                                                                                      GCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAG AAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCC GGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTAAGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGGTGGGATATTTATAGAAGGAATGATCAAATTTGGGTGCTTAAATCTGTCTGCAGGTCTCTCAAATGTAAATATGTAATTGTTCTTTCGCAAAAAAAAAAG]




>consensus_13517#0
AAACACCCAAATCCTCATCTCCTCTCTTAGCTAAGATTGTTTGACAAAATAATCTCTAGC
TTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCA
CACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGCGAGATATGG
GTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGG
CGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAA
GGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACC
TCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGT
TGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGA
AGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGAAGATCA
AGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCG
ACCTGTGGATGGATCTGAATCCGGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGT
TCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCG
TTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGT
TTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAA
AAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTA
AGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGGTGGGATA
TTTATAGAAGGAATGATCAAATTTGGGTGCTTAAATCTGTCTGCAGGTCTCTCAAATGTA
AATATGTAATTGTTCTTTCGCAAAAAAAAAAG

consensusID : consensus_13517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 785
fasta sequence

                              [CGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCTCGATCACACCGACCTGTGGATGGATCTGAATCCGGGAGGGTTC-TTGAGCTTCTTGGAGGAGGAGGACGTGTTC-CAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATC-TTAATTAGTATTTGGGATTAG-AGGTTCAATTTCCTTTT-GGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTAAGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGCTGGGATATTTATAGAAGGAATGATCAAATTTGGGTGTTTAAATCTGTCTGCAGGTCTCTCAAATGTAAATATGTAATTGTTCTTTCGCATATGGAGCTCTCCCTCTTGATCAC]

[-] EMBL CB632836             [CGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCTCGATCACACCGACCTGTGGATGGATCTGAATCCGGGAGGGTTC TTGAGCTTCTTGGAGGAGGAGGACGTGTTC CAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATC TTAATTAGTATTTGGGATTAG AGGTTCAATTTCCTTTT GGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTAAGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGCTGGGATATTTATAGAAGGAATGATCAAATTTGGGTGTTTAAATCTGTCTGCAGGTCTCTCAAATGTAAATATGTAATTGTTCTTTCGCATATGGAGCTCTCCCTCTTGATCAC]
[+] EMBL BI810321             [                                                                                                                                                                                                                                                                             GTGAAGGT GA GAAGGCCATGGATTGGGCTACGATCATCTCGATCACACCGACCTGTGGATGTATCTGAATCCGGGA GGTTCTTTGAGCTTCTTGGAGGAGGAGGACGTGTTCACAAGGCAT GCTGCCGACCGGTTCC ATCGCCTCTTGGTTCATCGAGGATGGATTTC TTGGTGAAATGGACGCATCGTTAATTAGTATTTGGGATTAGAAGGTTC ATTTCCTTTTGGGTTTACTTTGTGAGAATTTTT CCTTTT GTTGAGAGGTTTGGAT                                                                                                                                                                                                                                                 ]




>consensus_13517#1
CGGCGCACAAGGAGAGGCCCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCA
AGACCGACGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGC
AGCAGCAAGAATCGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGCGGTGCTCGACG
AAAAGAAGAAGGTCACCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGA
GGAAGAAGAAGAAGAAGATCAAGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCT
ACGATCATCTCGATCACACCGACCTGTGGATGGATCTGAATCCGGGAGGGTTCTTGAGCT
TCTTGGAGGAGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTG
GTTCATCGAGGATGGATTTCGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTA
GAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTT
GGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAA
TGGTGATGATGGTTAAGTAAGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGC
AAGGGTTATTGCTGGGATATTTATAGAAGGAATGATCAAATTTGGGTGTTTAAATCTGTC
TGCAGGTCTCTCAAATGTAAATATGTAATTGTTCTTTCGCATATGGAGCTCTCCCTCTTG
ATCAC

consensusID : consensus_13517#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [GGGCTCTCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCTCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACTGATGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATTGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGTGGTGCTCGACGAAAAGAAGGAGAAGGTCTCCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGAAGATCAAGTGTGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGGTACGATCATCCCGATCACACCGACCTGTGGATGGATTTGAATCCGGGAGGGTTCTTGAGTTTCTTGGAGGAGGAGGACGTGTTTCAAGGCATGGCTGCCGACCTGTTCCAATTGCCTCTTGGTTCATCGAGGATGGATTTTGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTTCTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTGTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGATAAGGGGATTATCACAATGGTGATGATGGTTAAGTAAGTATTGCTCCCATGGTTGCAATAATTGGTGATGTGTATTCAAGGGTTATTGGTGGGATATTGGTAGAAGGAATGATCAAATTTGGGTGCTTGAGATTAAAAAGAAATAAAGCTTGAGGGGG]

[-] EMBL CB662710             [GGGCTCTCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCTCAAGATAAGGATCATCCACATCATTGCGCCAGAGATCATCAAGACTGATGTCGCCAACTTCCGGGACCTCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATTGGCAGAAACGACGTTGCCGCCGCCATCGCCGGTGGTGGTGCTCGACGAAAAGAAGGAGAAGGTCTCCACCAAGAAGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGAAGATCAAGTGTGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGGTACGATCATCCCGATCACACCGACCTGTGGATGGATTTGAATCCGGGAGGGTTCTTGAGTTTCTTGGAGGAGGAGGACGTGTTTCAAGGCATGGCTGCCGACCTGTTCCAATTGCCTCTTGGTTCATCGAGGATGGATTTTGTTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTTCTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTGTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGATAAGGGGATTATCACAATGGTGATGATGGTTAAGTAAGTATTGCTCCCATGGTTGCAATAATTGGTGATGTGTATTCAAGGGTTATTGGTGGGATATTGGTAGAAGGAATGATCAAATTTGGGTGCTTGAGATTAAAAAGAAATAAAGCTTGAGGGGG]




>consensus_13517#2
GGGCTCTCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCTCAAGATAAGGATCATCCACAT
CATTGCGCCAGAGATCATCAAGACTGATGTCGCCAACTTCCGGGACCTCGTGCAGCGCCT
CACCGGCAAGCAGCAGCAGCAGCAGCAAGAATTGGCAGAAACGACGTTGCCGCCGCCATC
GCCGGTGGTGGTGCTCGACGAAAAGAAGGAGAAGGTCTCCACCAAGAAGAGGCCGGCGCC
GGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGAAGATCAAGTGTGAGGTGAA
GGTGGAGGAAGGCCATGGATTTGGGTACGATCATCCCGATCACACCGACCTGTGGATGGA
TTTGAATCCGGGAGGGTTCTTGAGTTTCTTGGAGGAGGAGGACGTGTTTCAAGGCATGGC
TGCCGACCTGTTCCAATTGCCTCTTGGTTCATCGAGGATGGATTTTGTTGGTGAAATGTA
CGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTTCTTTGTGAGA
ATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTGTTCAAAAAAGAAAAAGAGAGAGAGAG
AGAGAGAGAGATAAGGGGATTATCACAATGGTGATGATGGTTAAGTAAGTATTGCTCCCA
TGGTTGCAATAATTGGTGATGTGTATTCAAGGGTTATTGGTGGGATATTGGTAGAAGGAA
TGATCAAATTTGGGTGCTTGAGATTAAAAAGAAATAAAGCTTGAGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13517#0      AAACACCCAAATCCTCATCTCCTCTCTTAGCTAAGATTGTTTGACAAAATAATCTCTAGC 60
consensus_13517#1      ------------------------------------------------------------
consensus_13517#2      ------------------------------------------------------------
                                                                                   

consensus_13517#0      TTCTACATCACATCATATCACTTCCCTCTCTCAATCTTTTTCTCTCCTATCCTCTCCTCA 120
consensus_13517#1      ------------------------------------------------------------
consensus_13517#2      ------------------------------------------------------------
                                                                                   

consensus_13517#0      CACTAGCTTAGCTTAGCTTAGCTAGCTACCATCGTCTTCTTCGTCTTCGGCGAGATATGG 180
consensus_13517#1      ------------------------------------------------------------
consensus_13517#2      ------------------------------------------------------------
                                                                                   

consensus_13517#0      GTGAGTGCAGCTACAACAGCATGAGCCCATCGACGCCGCTGCCGCCGCCGCCATCGGCGG 240
consensus_13517#1      ------------------------------------------------------------
consensus_13517#2      ------------------------------------------------------------
                                                                                   

consensus_13517#0      CGGCGGCGAAGAAGGGCTCGCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCCCAAGATAA 300
consensus_13517#1      ---------------------------------CGGCGCACAAGGAGAGGCCCAAGATAA 27
consensus_13517#2      -------------GGGCTCTCCGGAGGCGGCGGCGGCGCACAAGGAGAGGCTCAAGATAA 47
                                                        ****************** ********

consensus_13517#0      GGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACC 360
consensus_13517#1      GGATCATCCACATCATTGCGCCAGAGATCATCAAGACCGACGTCGCCAACTTCCGGGACC 87
consensus_13517#2      GGATCATCCACATCATTGCGCCAGAGATCATCAAGACTGATGTCGCCAACTTCCGGGACC 107
                       ************************************* ** *******************

consensus_13517#0      TCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGT 420
consensus_13517#1      TCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATCGGCAGAAACGACGT 147
consensus_13517#2      TCGTGCAGCGCCTCACCGGCAAGCAGCAGCAGCAGCAGCAAGAATTGGCAGAAACGACGT 167
                       ********************************************* **************

consensus_13517#0      TGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAGGAGAAGGTCACCACCAAGA 480
consensus_13517#1      TGCCGCCGCCATCGCCGGTGGCGGTGCTCGACGAAAAGAAG---AAGGTCACCACCAAGA 204
consensus_13517#2      TGCCGCCGCCATCGCCGGTGGTGGTGCTCGACGAAAAGAAGGAGAAGGTCTCCACCAAGA 227
                       ********************* *******************   ****** *********

consensus_13517#0      AGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGAAGATCA 540
consensus_13517#1      AGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGA---TCA 261
consensus_13517#2      AGAGGCCGGCGCCGGCGGAGGACGAGAGCATGATGAGGAAGAAGAAGAAGAAGAAGATCA 287
                       ******************************************************   ***

consensus_13517#0      AGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCCCGATCACACCG 600
consensus_13517#1      AGTGCGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGCTACGATCATCTCGATCACACCG 321
consensus_13517#2      AGTGTGAGGTGAAGGTGGAGGAAGGCCATGGATTTGGGTACGATCATCCCGATCACACCG 347
                       **** ******************************** ********** ***********

consensus_13517#0      ACCTGTGGATGGATCTGAATCCGGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGT 660
consensus_13517#1      ACCTGTGGATGGATCTGAATCCGGGAGGGTTCTTGAGCTTCTTGGAGGAGGAGGACGTGT 381
consensus_13517#2      ACCTGTGGATGGATTTGAATCCGGGAGGGTTCTTGAGTTTCTTGGAGGAGGAGGACGTGT 407
                       ************** ********************** **********************

consensus_13517#0      TCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCG 720
consensus_13517#1      TCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCG 441
consensus_13517#2      TTCAAGGCATGGCTGCCGACCTGTTCCAATTGCCTCTTGGTTCATCGAGGATGGATTTTG 467
                       * **************************** *************************** *

consensus_13517#0      TTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGT 780
consensus_13517#1      TTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGT 501
consensus_13517#2      TTGGTGAAATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGT 527
                       ************************************************************

consensus_13517#0      TTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAA 840
consensus_13517#1      TTACTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTCTTCAAAAAAGAAA 561
consensus_13517#2      TTTCTTTGTGAGAATTTTTGCATTTTGGTTGAGAGGTTTGGATGGTGTTCAAAAAAGAAA 587
                       ** ******************************************* *************

consensus_13517#0      AAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGATGATGGTTAAGTA 900
consensus_13517#1      AAGAGAGAGAGAGAGAGAGAGAGA--AGGGGATAAACACAATGGTGATGATGGTTAAGTA 619
consensus_13517#2      AAGAGAGAGAGAGAGAGAGAGAGATAAGGGGATTATCACAATGGTGATGATGGTTAAGTA 647
                       ************************  ******* * ************************

consensus_13517#0      AGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGGTGGGATA 960
consensus_13517#1      AGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGCTGGGATA 679
consensus_13517#2      AGTATTGCTCCCATGGTTGCAATAATTGGTGATGTGTATTCAAGGGTTATTGGTGGGATA 707
                       ******** ****************************** ************ *******

consensus_13517#0      TTTATAGAAGGAATGATCAAATTTGGGTGCTTAAATCTGTCTGCAGGTCTCTCAAATGTA 1020
consensus_13517#1      TTTATAGAAGGAATGATCAAATTTGGGTGTTTAAATCTGTCTGCAGGTCTCTCAAATGTA 739
consensus_13517#2      TTGGTAGAAGGAATGATCAAATTTGGGTGCTTGA----GATTAAAAAGAAATAAAGCTTG 763
                       **  ************************* ** *    *  *  *      * **   * 

consensus_13517#0      AATATGTAATTGTTCTTTCGCAAAAAAAAAAG-------------- 1052
consensus_13517#1      AATATGTAATTGTTCTTTCGCATATGGAGCTCTCCCTCTTGATCAC 785
consensus_13517#2      AGGGGG---------------------------------------- 769
                       *    *