|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 3081 fasta sequence
[GTACTACTACACTCCTAATCTCTCTCTCTTTCTCGAGTGGAATCCATTGATCCATTGTGTAGTGGGAGANAGACTTCTCTACGCGGTCACGGGTTCCCCAGCGGAGGAGAAAGATAGATAGAGAGAGCAAAGAGCAAAAAAATCTCTCTTTTTTCTTCTTGTTGTTTCTGCAGTTACCTTTGTCTTGCCTTCAATGCCACCGCTTTACTGCCGGATCTGAGGAAAGCTCCCATCCTTGCTGAGTTCTTGTGCTGCTTCTTCCACAATTCTTCCTTTTGTTGAGAATTTTGCCTTCCATCTGCTTAATCGGTGACAAAGGTGGTGGGATCTTGCTTCTCTTCCTGCAAGAAAAGGCTCGTTTTTTT-GTTTCGCCGTTTGCTGCTTGCTCAGGCAGGAGGAAGGCGATGCTGTTCTTGCTGATTTC-AGTCTTCTTCTTCC-GATGGTCGAGGTGAGGTTTGTTGCTACTTCACCTTTCGCTTCGTTGCGCTCTGCGGAGAGAAAGAAAGCAAAGGTGGTGGAAAAGAAGCGAAAATTTTGCTTGCTTCCTCTGCAAATCTGAGGAATTTTCTCGCAGAAAGCCTGAATTCCCTCTGAATTCCGGTGCATGGAAAGATCGTCCCCTCCATTTCCAAGAAGAAGAAGATACTAGTAGCAGCTGCAGCTACACTCTAGTAGTAGTGGCTACTAGTACTAGCTAGCCTCCAATGGCGTCCTCACCGTCTCCCTCCCCGGGCACCGCAACTCCCGCCACCGCCGCCGCCGCGCCTTCCACCGCGACCCCAACACCCGCGACGCAGCCCAATGCCACGCCGGCCGACCCCTCCATCACTCCCCCGGCCGCGTCCCCTCCCCTTCCCTCCGCCGCCACGCCACCCCCACAGCCCGATTCCCCGCCGCCCTCTCCGCCACCAGCTCCTCCGGTCGCAGTGCCACCGCCGGCCACCGTGCCACCGCCGCCTGTACCCGTTGCGTCTCCACCACCAACCCCGTCAGCCACATTGCCGCCGCCGTCGCCACCGGCTTCAGTGCCGGTGCCACCTACACCTGCTACTACCCCTCCAAAGCCGTCGCCTGTGCAGCAACCCCCAGTGGCTGCATCACCACCTCCATCGTCTCCGGCTGATTTGCCGCCGCCTAATCCGCCGGCTCGCTCAGACACGCCGCCGGTAGTGCAGTCACCTCCACCGCCGCACCGGAGATCGCCGAGAACGCCATGGGCTCCACCGATGGCGCCGTCGCCTTCTGGAAGTCCTACCAAGCCTTCTCCAGCTAGTCCATCACCAATTGCTGGAGATCCAATCATCCCTACACCCAATAACCCTTCGTCGCCTCTGGCGACGCCATCAGCACCAGGCTCTGGTACTCCTGTGGTGACGCCATCTGCACCAGTCTCTGGCCCTCCATCGCCAGGCACGGCTCCAGCCACGGCAGCTGATCGATCCAACAAGTCATTAAGTCCCAACACGCAGGACGGCAGCGTCTCGTCGAGCGATGGTGGAATGAGCTCAAGTGCAAAGGCGGGCATCGGTGTAGTCGTCGCTATTCTTGTGCTTAGCTTGGTAGGAGCTGCATTTTGGTACAAGAAGAAACGGAGGAGAGCAACCGGTTACCATGCAGGATTTGTGATGCCATCGCCTGCCTCGTCTCCACAAGTGTTAGGGTATTCAGGTAAAACTAACTACAGTGCTGGCAGTCCTGATTACAAAGAAACAATGTCGGAGTTCAGCATGGGCAATTGTCGATTCTTCACTTACGAGGAATTGCACCAGATCACAAATGGTTTTGCAGCGAAGAACCTGCTAGGGGAAGGTGGGTTTGGGTCTGTTTACAAGGGTTGCTTGGCTGATGGAAGAGAGGTTGCCGTTAAGAAACTGAAAGGTGGTGGTGGGCAGGGGGAACGTGAGTTCCAGGCTGAGGTGGAGATAATCAGTCGTGTGCACCACCGCCATCTAGTTTCTCTTGTTGGGTATTGCATTTCGGGGGACCAGAGGTTGCTTGTCTATGATTTTGTGCCCAATGACACACTGCACCATCATCTTCATGGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTGGCTCAGCTCGAGGGATAGCATATCTTCATGAAGATTGCCATCCCCGAATTATCCACCGAGATATTAAATCCTCCAACATTTTACT-GGATAATAACTTTGAAGCCCAGGTTGCTGATTTTGGCCTTGCAAGACTAGCTATGGATGCAGTCACGCATGTAACTACACGGGTGATGGGAACTTTTGGTTATCTGGCTCCGGAGTATGCTTCGAGTGGCAAGTTGACTGAGAGATCTGATGTATTCTCTTTTGGCGTTGTTCTCTTAGAGCTTATTACCGGTAGAAAGCCTGTTGACGCATCAAAACCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGGCCATTGCTCACAGAAGCAATTGAGACTGGCAACGTTGGGGAGCTGATTGACTCCAGGCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATTCAGCCTGGTAAGAGCGAAATGTTCAAT-G-TGGC--AAAC-AC---GGCA-GAAATCAGGCT-GTTTCAGCGGATGG-CTTTTGGTAGCCAAGA-TTTCACAACTGATTTCACCCAATCTAGCTGGGATAGTCGTAGTAGAGATGTTGATGCCTCTGGTTCGAGGCCCTTGTAATCATAGTCTAATACTCCTCTAATTAGCTAGGGTATTGTTGCATTGGATTTGTTTCATCTGATTTTGTTTTCTTCTTTTTTGTGGCCATCTCTGTCAACTAGGAGTAATGTATAT-CATGCGTCCCACTAAGAAAAGTGTATATTGATTGCACTGAGC-GTGCCTGATTCTACAAAATCTGACAGACAGAAGATTTACTAGTACTAGCCCTTGAAGGAACCAATGAATTGCCTCTGTTGGTGGTGACTGAACCTGCATATTCCACTCTATATTTCCTCAAAAA]
[+] EMBL AK101096 [GTACTACTACACTCCTAATCTCTCTCTCTTTCTCGAGTGGAATCCATTGATCCATTGTGTAGTGGGAGAGAGACTTCTCTACGCGGTCACGGGTTCCCCAGCGGAGGAGAAAGATAGATAGAGAGAGCAAAGAGCAAAAAAATCTCTCTTTTTTCTTCTTGTTGTTTCTGCAGTTACCTTTGTCTTGCCTTCAATGCCACCGCTTTACTGCCGGATCTGAGGAAAGCTCCCATCCTTGCTGAGTTCTTGTGCTGCTTCTTCCACAATTCTTCCTTTTGTTGAGAATTTTGCCTTCCATCTGCTTAATCGGTGACAAAGGTGGTGGGATCTTGCTTCTCTTCCTGCAAGAAAAGGCTCGTTTTTTT GTTTCGCCGTTTGCTGCTTGCTCAGGCAGGAGGAAGGCGATGCTGTTCTTGCTGATTTC AGTCTTCTTCTTCC GATGGTCGAGGTGAGGTTTGTTGCTACTTCACCTTTCGCTTCGTTGCGCTCTGCGGAGAGAAAGAAAGCAAAGGTGGTGGAAAAGAAGCGAAAATTTTGCTTGCTTCCTCTGCAAATCTGAGGAATTTTCTCGCAGAAAGCCTGAATTCCCTCTGAATTCCGGTGCATGGAAAGATCGTCCCCTCCATTTCCAAGAAGAAGAAGATACTAGTAGCAGCTGCAGCTACACTCTAGTAGTAGTGGCTACTAGTACTAGCTAGCCTCCAATGGCGTCCTCACCGTCTCCCTCCCCGGGCACCGCAACTCCCGCCACCGCCGCCGCCGCGCCTTCCACCGCGACCCCAACACCCGCGACGCAGCCCAATGCCACGCCGGCCGACCCCTCCATCACTCCCCCGGCCGCGTCCCCTCCCCTTCCCTCCGCCGCCACGCCACCCCCACAGCCCGATTCCCCGCCGCCCTCTCCGCCACCAGCTCCTCCGGTCGCAGTGCCACCGCCGGCCACCGTGCCACCGCCGCCTGTACCCGTTGCGTCTCCACCACCAACCCCGTCAGCCACATTGCCGCCGCCGTCGCCACCGGCTTCAGTGCCGGTGCCACCTACACCTGCTACTACCCCTCCAAAGCCGTCGCCTGTGCAGCAACCCCCAGTGGCTGCATCACCACCTCCATCGTCTCCGGCTGATTTGCCGCCGCCTAATCCGCCGGCTCGCTCAGACACGCCGCCGGTAGTGCAGTCACCTCCACCGCCGCACCGGAGATCGCCGAGAACGCCATGGGCTCCACCGATGGCGCCGTCGCCTTCTGGAAGTCCTACCAAGCCTTCTCCAGCTAGTCCATCACCAATTGCTGGAGATCCAATCATCCCTACACCCAATAACCCTTCGTCGCCTCTGGCGACGCCATCAGCACCAGGCTCTGGTACTCCTGTGGTGACGCCATCTGCACCAGTCTCTGGCCCTCCATCGCCAGGCACGGCTCCAGCCACGGCAGCTGATCGATCCAACAAGTCATTAAGTCCCAACACGCAGGACGGCAGCGTCTCGTCGAGCGATGGTGGAATGAGCTCAAGTGCAAAGGCGGGCATCGGTGTAGTCGTCGCTATTCTTGTGCTTAGCTTGGTAGGAGCTGCATTTTGGTACAAGAAGAAACGGAGGAGAGCAACCGGTTACCATGCAGGATTTGTGATGCCATCGCCTGCCTCGTCTCCACAAGTGTTAGGGTATTCAGGTAAAACTAACTACAGTGCTGGCAGTCCTGATTACAAAGAAACAATGTCGGAGTTCAGCATGGGCAATTGTCGATTCTTCACTTACGAGGAATTGCACCAGATCACAAATGGTTTTGCAGCGAAGAACCTGCTAGGGGAAGGTGGGTTTGGGTCTGTTTACAAGGGTTGCTTGGCTGATGGAAGAGAGGTTGCCGTTAAGAAACTGAAAGGTGGTGGTGGGCAGGGGGAACGTGAGTTCCAGGCTGAGGTGGAGATAATCAGTCGTGTGCACCACCGCCATCTAGTTTCTCTTGTTGGGTATTGCATTTCGGGGGACCAGAGGTTGCTTGTCTATGATTTTGTGCCCAATGACACACTGCACCATCATCTTCATGGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTGGCTCAGCTCGAGGGATAGCATATCTTCATGAAGATTGCCATCCCCGAATTATCCACCGAGATATTAAATCCTCCAACATTTTACT GGATAATAACTTTGAAGCCCAGGTTGCTGATTTTGGCCTTGCAAGACTAGCTATGGATGCAGTCACGCATGTAACTACACGGGTGATGGGAACTTTTGGTTATCTGGCTCCGGAGTATGCTTCGAGTGGCAAGTTGACTGAGAGATCTGATGTATTCTCTTTTGGCGTTGTTCTCTTAGAGCTTATTACCGGTAGAAAGCCTGTTGACGCATCAAAACCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGGCCATTGCTCACAGAAGCAATTGAGACTGGCAACGTTGGGGAGCTGATTGACTCCAGGCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATTCAGCCTGGTAAGAGCGAAATGTTCAAT G TGGC AAAC AC GGCA GAAATCAGGCT GTTTCAGCGGATGG CTTTTGGTAGCCAAGA TTTCACAACTGATTTCACCCAATCTAGCTGGGATAGTCGTAGTAGAGATGTTGATGCCTCTGGTTCGAGGCCCTTGTAATCATAGTCTAATACTCCTCTAATTAGCTAGGGTATTGTTGCATTGGATTTGTTTCATCTGATTTTGTTTTCTTCTTTTTTGTGGCCATCTCTGTCAACTAGGAGTAATGTATAT CATGCGTCCCACTAAGAAAAGTGTATATTGATTGCACTGAGC GTGCCTGATTCTACAAAATCTGACAGACAGAAGATTTACTAGTACTAGCCCTTGAAGGAACCAATGAATTGCCTCTGTTGGTGGTGACTGAACCTGCATATTCCACTCT ]
[+] EMBL OSS2833A [ CCATTGATCCATTGTGTAGTGGGAGANAGACTTCTCTACGCGGTCACGGGTTCCCCAGCGGAGGAGAAAGATAGATAGAGAGAGCAAAGAGCAAAAAAATCTCTCTTTTTTCTTCTTGTTGTTTCTGCAGTTACCTTTGTCTTGCCTTCAATGCCACCGCTTTACTGCCGGATCTGAGGAAAGCTCCCATCCTTGCTGAGTTCTTGTGCTGCTTCTTCCACAATTCTTCCTTTTGTTGAGAATTTTGCCTTCCATCTGCTTAATCGGTGACAAAGGTGGTGGGATCTTGCTTCTCTTCCTGCAAGAA ]
[+] EMBL OSS2834A [ CCATTGATCCATTGTGTAGTGGGAGANAGACTTCTCTACGCGGTCACGGGTTCCCCAGCGGAGGAGAAAGATAGATAGAGAGAGCAAAGAGCAAAAAAATCTCTCTTTTTTCTTCTTGTTGTTTCTGCAGTTACCTTTGTCTTGCCTTCAATGCCACCGCTTTACTGCCGGATCTGAGGAAAGCTCCCATCCTTGCTGAGTTCTTGTGCTGCTTCTTCCACAATTCTTCCTTTTGTTGAGAATTTTGCCTTCCATCTGCTTAATCGGTGACAAAGGTGGTGGGATCTTGCTTCTCTTCCTGCAAGAAAAG ]
[+] EMBL C74454 [ TTCTCTACGCGGTCACGGGTTCCCCAGCGGAGGAGAAAGATAGATAGAGAGAGCCAAGAGCAAAAAAATCTCTCTTTTTTCTTCTTGTTGTTTCTGCAGTNACCTTTGTCTTGCCTTCAATGCCACCGCTTTACTGCCGGATCTGAGGAAAGCTCCCATCCTTGCTGAGTTCTTGTGCTGCTTCTTCCACAATTCTTCCTTTTGTTGAGAATNTTGCCTTCCATCTGCTTAATCGGTGACAAAGGTGGTGGGATCTTGCTTCTCTTCCTGCAAGAAAANGCTCGTTTTTTTGGTTTCGCCGTTTGCTGCTTGCNCAGGCAGGAGGAANGCGATGCTGTCCTTGCTGAATTCAAGTTTCCTCCTTCCGGNGGGCCAAGGTtaagg ]
[+] EMBL CB643837 [ GCTGACCTATACAACAAGTCATTAAGTCCCAACACGCAGGACGGCAGCGTCTCGTCGAGCGATGGTGGAATGAGCTCCCCTGCAAAGGCGGGCATCGGTGTAGTCGTCGCTATTCTTGTGCTTAGCTTGGTAGGAGCTGCATTTTGGTACAAGAAGAAACGGAGGAGAGCAACCGGTTACCATGCAGGATTTGTGATGCCATCGCCTGCCTCGTCTCCACAAGTGTTAGGGTATTCAGGTAAAACTAACTACAGTGCTGGCAGTCCTGATTACAAAGAAACAATGTCAGAGTTCAGCATGGGCAATTGTCGATTCTTCACTTACGAGGAATTGCACCAGATCACAAATGGTTTTGCAGCGAAGAACCTGCTAGGGGAAGGTGGGTTTGGGTCTGTTTACAAGGGTTGCTTGGCTGATGGAAGAGAGGTTGCCGTTAAGAAACTGAAAGGTGGTGGTGGGCAGGGGGAACGTGAGTTCCAGGCTGAGGTGGAGATAATCAGTCGTGTGCACCACCGCCATCTAGTTTCTCTTGTTGGGTATTGCATTTCGGGGGACCAGAGGTTGCTTGTCTATGATTTTGTGCCCAATGACACACTGCACCATCATCTTCATGGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTGGCTCAGCTCGAGGGATAGCATATCTTCATGAAGATTGCCATCCCCGAATTATCCACCGAGATATTAAATCCTCCAACATTTTACTGGGAT ATAACTTTGAAGCCCAGGTTGCTGATTTTGGCC TGCAAGACTA ]
[+] EMBL CA999255 [ AGCATATCTTCATGAAGATTGCCATCCCCGAATTATCCACCGAGATATTAAATCCTCCAACATTTTACT GGATAATAACTTTGAAGCCCAGGTTGCTGATTTTGGCCTTGCAAGACTAGCTATGGATGCAGTCACGCATGTAACTACACGGGTGATGGGAACTTTTGGTTATCTGGCTCCGGAGTATGCTTCGAGTGGCAAGTTGACTGAGAGATCTGATGTATTCTCTTTTGGCGTTGTTCTCTTAGAGCTTATTACCGGTAGAAAGCCTGTTGACGCATCAAAACCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGGCCATTGCTCACAGAAGCAATTGAGACTGGCAACGTTGGGGAGCTGATTGACTCCAGGCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATTCAGCCTGGTAAGAGCG ]
[+] EMBL CA998468 [ AGCATATCTTCATGAAGATTGCCATCCCCGAATTATCCACCGAGATATTAAATCCTCCAACATTTTACT GGATAATAACTTTGAAGCCCAGGTTGCTGATTTTGGCCTTGCAAGACTAGCTATGGATGCAGTCACGCATGTAACTACACGGGTGATGGGAACTTTTGGTTATCTGGCTCCGGAGTATG ]
[+] EMBL AU183757 [ CAGGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATTCAGCCTGGTAAGAGCGAAATGTTCAAT G TGGC AAAC AC GGCA GAAATCAGGCT GTTTCAGCGGATGG CTTTTGGTAGCCAAGA TTTCACAACTGATTTCACCCAATCTAGCTGGGATAGTCGTAGTAGAGATGTTGATGCCTCTGGTTCGAGGCCCTTGTAATCATAGTCTAATACTCCTCTAATTAGCTAGGGTATTGTTGCATTGGATTTGTTTCATCTGATTTTGTTTTCTTCTTTTTTGTGGCCATCTCTGTCAACTAGGAGTAATGTATAT CATGCGTCCCACTAAGAAAAGTGTATATTGATTGCACTGAGCGGTGCCTGATTCTACAAAATCTGACAGACAGAAGATTTACTAGTACTAaaaa ]
[+] EMBL AU056702 [ AGCCTGGTAAGNGCGAAATGTTCAAT G TGGC AAAC AC GGCA GAAATCAGGCTGGTTTCAGCGGATGG CTTTTGGTAGCCAAGA TTTCACAACTGATTTCACCCAATCTAGCTGGGATAGTCGTNGTAGAGATGTTGATGCCTCTGGTTCGAGGCCCTTGTAATCATAGTCTAATACTCCTCTAATTAGCTAGGGTATTGTTGCATTGGATTTGTTTCATCTGATTTTGTTTTCTTCTTTTTTGTGGCCATCTCTGTCAACTAGGNGTAATGTATAT CATGCGTCCCACTAAGAAAAGTGTATATTGATTGCACTGAGC GTGCCTGATTCTACAAAATCTGACAGACAGAAGATTTACTNGTACTAGCCCTTGAAGGAACCAATGAATTGCCTCTGTTGGTGGTGACTGAACCTGCATATTCCACTCTATATTTCCTCAAAAA]
[+] EMBL AU097209 [ cCAATCGTTGGCCAAAACTACCGTGCCAGGAAATCAGGCT GTTTCAGCGGATGGCCTTTTGGTAGCCAAGATTTTCACAACTGATTTCACCCAATCTAGCTGGGATAGTCGTAGTAGAGATGTTGATGCCTCTGGTTCGAGGCCCTTGTAATCATAGTCTAATACTCCTCTAATTAGCTAGGGTATTGTTGCATTGGATTTGTTTCATCTGATTTTGTTTTCTTCTTTTTTGTGGCCATCTCTGTCAACTAGGAGTAATGTATAT CATGCGTCCCACTAAGAAAAGTGTATATTGATTCNACTGAGC GTGCCTGATTCTACAAAAa ]
[+] EMBL AU097210 [ AATCATAGTCTAATACTCCTCTAATTAGCTAGGGTATTGTTGCATTGGATTTGTTTCATCTGATTTTGTTTTCTTCTTTTTTGTGGCCATCTCTGTCAACTAGGAGTAATGTATATNCATGCGTCCCACTAAGAAAAGTGTATATTGATNTCACTGAGC GTGCCTGATTCTACAAAAaa ]
consensusID : consensus_13640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[CCACCGAGATATTAAATCCTCCAACATTTTACTGGATAATAACTTTGAAGCCCAGGTTGCTGATTTTGGCCTTGCAAGACNAGCTATGGATGCAGTCACGCATGTAACTACACGGGTGATGGGAACTTTTGGTTATCNGGCTCCGGAGTATGCTTCGAGTGGCAAGTTGACTGAGAGATCTGATGTATTCTCTTTTGGCGTTGTTCTCTTAGAGCTTATTACCGGTAGAAAGCCTGTTGACGCATCAAAACCATTGGGTGATGAGAGCCTTGTTGAGTGGGTAAGCTATATCAGTAACTAGAAATCATTTTTTTTTAGATAATGGAAGATGAGTATATTGAAATTAGTATGTTCAATAAGATTTTTGCCCCTGTATGATCAAATGAAAGCAAATGGAGAAATATATTTTATCAACTGTATTTGGAATAGCCAACTTGGACTCCATTTCCAAAGATTCTAA]
[+] EMBL AU056701 [CCACCGAGATATTAAATCCTCCAACATTTTACTGGATAATAACTTTGAAGCCCAGGTTGCTGATTTTGGCCTTGCAAGACNAGCTATGGATGCAGTCACGCATGTAACTACACGGGTGATGGGAACTTTTGGTTATCNGGCTCCGGAGTATGCTTCGAGTGGCAAGTTGACTGAGAGATCTGATGTATTCTCTTTTGGCGTTGTTCTCTTAGAGCTTATTACCGGTAGAAAGCCTGTTGACGCATCAAAACCATTGGGTGATGAGAGCCTTGTTGAGTGGGTAAGCTATATCAGTAACTAGAAATCATTTTTTTTTAGATAATGGAAGATGAGTATATTGAAATTAGTATGTTCAATAAGATTTTTGCCCCTGTATGATCAAATGAAAGCAAATGGAGAAATATATTTTATCAACTGTATTTGGAATAGCCAACTTGGACTCCATTTCCAAAGATTCTAA]
consensusID : consensus_13640#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence
[ACTTCTCTACGCGGTCACGGGTTCCCCAGCGGAGGAGAAAGATACTAGTAGCAGCTGCAGCTACACTCTAGTAGTAGTGGCTACTAGTACTAGCTAGCCTCCAATGGNGTCCTCACCGTNTCCNTCCCCGGGCACCGCAACTCCCGCCACCGCCGCCGCCGCGCCTTCCACCGCNACCCCAACACCCGCNACGCAGCCCAATGCCACGCCGGCCGACCCCTCCATCANTCCCCCGGCCGCNTCCCCTCCC]
[+] EMBL AU163435 [ACTTCTCTACGCGGTCACGGGTTCCCCAGCGGAGGAGAAAGATACTAGTAGCAGCTGCAGCTACACTCTAGTAGTAGTGGCTACTAGTACTAGCTAGCCTCCAATGGNGTCCTCACCGTNTCCNTCCCCGGGCACCGCAACTCCCGCCACCGCCGCCGCCGCGCCTTCCACCGCNACCCCAACACCCGCNACGCAGCCCAATGCCACGCCGGCCGACCCCTCCATCANTCCCCCGGCCGCNTCCCCTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13640#0 GTACTACTACACTCCTAATCTCTCTCTCTTTCTCGAGTGGAATCCATTGATCCATTGTGT 60
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 AGTGGGAGANAGACTTCTCTACGCGGTCACGGGTTCCCCAGCGGAGGAGAAAGATAGATA 120
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 GAGAGAGCAAAGAGCAAAAAAATCTCTCTTTTTTCTTCTTGTTGTTTCTGCAGTTACCTT 180
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TGTCTTGCCTTCAATGCCACCGCTTTACTGCCGGATCTGAGGAAAGCTCCCATCCTTGCT 240
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 GAGTTCTTGTGCTGCTTCTTCCACAATTCTTCCTTTTGTTGAGAATTTTGCCTTCCATCT 300
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 GCTTAATCGGTGACAAAGGTGGTGGGATCTTGCTTCTCTTCCTGCAAGAAAAGGCTCGTT 360
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TTTTTGTTTCGCCGTTTGCTGCTTGCTCAGGCAGGAGGAAGGCGATGCTGTTCTTGCTGA 420
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TTTCAGTCTTCTTCTTCCGATGGTCGAGGTGAGGTTTGTTGCTACTTCACCTTTCGCTTC 480
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 GTTGCGCTCTGCGGAGAGAAAGAAAGCAAAGGTGGTGGAAAAGAAGCGAAAATTTTGCTT 540
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 GCTTCCTCTGCAAATCTGAGGAATTTTCTCGCAGAAAGCCTGAATTCCCTCTGAATTCCG 600
consensus_13640#2 ------------------------------------------------------ACTTCT 6
consensus_13640#1 -----------------------------CCACCGAGATATTAAATCCTCCAACATTTTA 31
* *
consensus_13640#0 GTGCATGGAAAG---ATCGTCCCCTCCATTTCCAAGAAGAAGAAGATACTAGTAGCAGCT 657
consensus_13640#2 CTACGCGGTCAC---GGGTTCCCCAGCG-------GAGGAGAAAGATACTAGTAGCAGCT 56
consensus_13640#1 CTGGATAATAACTTTGAAGCCCAGGTTGCTGATTTTGGCCTTGCAAGACNAGCTATGGAT 91
* * ** * ** ** * *
consensus_13640#0 GCAGCTAC-------ACTCTAGTAGTAGTGGCTACTAGTACTAGCTAGCCTCCAATG-GC 709
consensus_13640#2 GCAGCTAC-------ACTCTAGTAGTAGTGGCTACTAGTACTAGCTAGCCTCCAATG-GN 108
consensus_13640#1 GCAGTCACGCATGTAACTACACGGGTGATGGGAACTTTTGGTTATCNGGCTCCGGAGTAT 151
**** ** *** * ** *** *** * * * **** *
consensus_13640#0 GTCCTCACCGTCTCCCTCCCCGGG-----CACCGCAACTCCCGCCACCGCCGCCGCCGCG 764
consensus_13640#2 GTCCTCACCGTNTCCNTCCCCGGG-----CACCGCAACTCCCGCCACCGCCGCCGCCGCG 163
consensus_13640#1 GCTTCGAGTGGCAAGTTGACTGAGAGATCTGATGTATTCTCTTTTGGCGTTGTTCTCTTA 211
* * * * * * * * * * ** * *
consensus_13640#0 CCTTCCACCGCGACCCCAACACCCGC-GACGCAGCCCAATGCCACGCCGGCCGACCCCTC 823
consensus_13640#2 CCTTCCACCGCNACCCCAACACCCGC-NACGCAGCCCAATGCCACGCCGGCCGACCCCTC 222
consensus_13640#1 GAGCTTATTACCGGTAGAAAGCCTGTTGACGCATCAAAACCATTGGGTGATGAGAGCCTT 271
* * ** ** * ***** * ** * * ***
consensus_13640#0 CATCACTCCCCCGGCCGCGTCCCCTCCCCTTCCCTCCGCCGCCACGCCACCCCCACAGCC 883
consensus_13640#2 CATCANTCCCCCGGCCGCNTCCCCTCCC-------------------------------- 250
consensus_13640#1 GTTGAGTGGGTAAGCTATATCAGTAACTAGAAATCATTTTTTTTTAGATAATGGAAGATG 331
* * * ** ** *
consensus_13640#0 CGATTCCCCGCCGCCCTCTCCGCCACCAGCTCCTCCGGTCGCAGTGCCACCGCCGGCCAC 943
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 AGTATATTGAAATTAGTATGTTCAATAAGATTTTTGCCCCTGTATGATCAAATGAAAGCA 391
consensus_13640#0 CGTGCCACCGCCGCCTGTACCCGTTGCGTCTCCACCACCAACCCCGTCAGCCACATTGCC 1003
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 AATGGAGAAATATATTTTATCAACTGTATTTGGAATAGCCAACTTGGACTCCATTTCCAA 451
consensus_13640#0 GCCGCCGTCGCCACCGGCTTCAGTGCCGGTGCCACCTACACCTGCTACTACCCCTCCAAA 1063
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 AGATTCTAA--------------------------------------------------- 460
consensus_13640#0 GCCGTCGCCTGTGCAGCAACCCCCAGTGGCTGCATCACCACCTCCATCGTCTCCGGCTGA 1123
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TTTGCCGCCGCCTAATCCGCCGGCTCGCTCAGACACGCCGCCGGTAGTGCAGTCACCTCC 1183
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 ACCGCCGCACCGGAGATCGCCGAGAACGCCATGGGCTCCACCGATGGCGCCGTCGCCTTC 1243
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TGGAAGTCCTACCAAGCCTTCTCCAGCTAGTCCATCACCAATTGCTGGAGATCCAATCAT 1303
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 CCCTACACCCAATAACCCTTCGTCGCCTCTGGCGACGCCATCAGCACCAGGCTCTGGTAC 1363
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TCCTGTGGTGACGCCATCTGCACCAGTCTCTGGCCCTCCATCGCCAGGCACGGCTCCAGC 1423
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 CACGGCAGCTGATCGATCCAACAAGTCATTAAGTCCCAACACGCAGGACGGCAGCGTCTC 1483
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 GTCGAGCGATGGTGGAATGAGCTCAAGTGCAAAGGCGGGCATCGGTGTAGTCGTCGCTAT 1543
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TCTTGTGCTTAGCTTGGTAGGAGCTGCATTTTGGTACAAGAAGAAACGGAGGAGAGCAAC 1603
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 CGGTTACCATGCAGGATTTGTGATGCCATCGCCTGCCTCGTCTCCACAAGTGTTAGGGTA 1663
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TTCAGGTAAAACTAACTACAGTGCTGGCAGTCCTGATTACAAAGAAACAATGTCGGAGTT 1723
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 CAGCATGGGCAATTGTCGATTCTTCACTTACGAGGAATTGCACCAGATCACAAATGGTTT 1783
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TGCAGCGAAGAACCTGCTAGGGGAAGGTGGGTTTGGGTCTGTTTACAAGGGTTGCTTGGC 1843
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TGATGGAAGAGAGGTTGCCGTTAAGAAACTGAAAGGTGGTGGTGGGCAGGGGGAACGTGA 1903
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 GTTCCAGGCTGAGGTGGAGATAATCAGTCGTGTGCACCACCGCCATCTAGTTTCTCTTGT 1963
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TGGGTATTGCATTTCGGGGGACCAGAGGTTGCTTGTCTATGATTTTGTGCCCAATGACAC 2023
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 ACTGCACCATCATCTTCATGGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAA 2083
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 AATTGCAGCTGGCTCAGCTCGAGGGATAGCATATCTTCATGAAGATTGCCATCCCCGAAT 2143
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TATCCACCGAGATATTAAATCCTCCAACATTTTACTGGATAATAACTTTGAAGCCCAGGT 2203
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TGCTGATTTTGGCCTTGCAAGACTAGCTATGGATGCAGTCACGCATGTAACTACACGGGT 2263
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 GATGGGAACTTTTGGTTATCTGGCTCCGGAGTATGCTTCGAGTGGCAAGTTGACTGAGAG 2323
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 ATCTGATGTATTCTCTTTTGGCGTTGTTCTCTTAGAGCTTATTACCGGTAGAAAGCCTGT 2383
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TGACGCATCAAAACCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGGCCATTGCTCAC 2443
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 AGAAGCAATTGAGACTGGCAACGTTGGGGAGCTGATTGACTCCAGGCTGGACAAGAACTT 2503
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 CAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGC 2563
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 ATCTAGGAGACCCCGGATGAGCCAGGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGA 2623
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TCTAAGCAATGGTATTCAGCCTGGTAAGAGCGAAATGTTCAATGTGGCAAACACGGCAGA 2683
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 AATCAGGCTGTTTCAGCGGATGGCTTTTGGTAGCCAAGATTTCACAACTGATTTCACCCA 2743
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 ATCTAGCTGGGATAGTCGTAGTAGAGATGTTGATGCCTCTGGTTCGAGGCCCTTGTAATC 2803
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 ATAGTCTAATACTCCTCTAATTAGCTAGGGTATTGTTGCATTGGATTTGTTTCATCTGAT 2863
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 TTTGTTTTCTTCTTTTTTGTGGCCATCTCTGTCAACTAGGAGTAATGTATATCATGCGTC 2923
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 CCACTAAGAAAAGTGTATATTGATTGCACTGAGCGTGCCTGATTCTACAAAATCTGACAG 2983
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 ACAGAAGATTTACTAGTACTAGCCCTTGAAGGAACCAATGAATTGCCTCTGTTGGTGGTG 3043
consensus_13640#2 ------------------------------------------------------------
consensus_13640#1 ------------------------------------------------------------
consensus_13640#0 ACTGAACCTGCATATTCCACTCTATATTTCCTCAAAAA 3081
consensus_13640#2 --------------------------------------
consensus_13640#1 --------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||